[med-svn] [SCM] bwa branch, master, updated. debian/0.6.1-1-14-g293285a

[Charles Plessy]

The following commit has been merged in the master branch:
commit ad0730059737e8b2bce8162b27dd87d3ad613e69
Author: Charles Plessy <plessy at debian.org>
Date:   Sat Dec 8 19:19:03 2012 +0900

    Bash completion for BWA.
    
    Also available at https://github.com/arq5x/bwa

diff --git a/debian/bash_completion/bwa b/debian/bash_completion/bwa
new file mode 100644
index 0000000..bc011bf
--- /dev/null
+++ b/debian/bash_completion/bwa
@@ -0,0 +1,20 @@
+_bwa()
+{
+  local cur prev opts
+  COMPREPLY=()
+  cur="${COMP_WORDS[COMP_CWORD]}"
+  prev="${COMP_WORDS[COMP_CWORD-1]}"
+  opts="index aln samse sampe
+        bwasw fa2pac pac2bwt
+        pac2bwtgen bwtupdate
+        pac_rev bwt2sa pac2cspac
+        stdsw"
+
+  case $prev in
+      bwa)
+          COMPREPLY=( $(compgen -W "${opts}" -- ${cur}) )
+          ;;
+  esac
+  return 0
+}
+complete -F _bwa -o default bwa
diff --git a/debian/install b/debian/install
index 039db1a..1918bc3 100644
--- a/debian/install
+++ b/debian/install
@@ -3,3 +3,4 @@ bwa	usr/bin
 solid2fastq.pl	usr/share/bwa
 qualfa2fq.pl	usr/share/bwa
 xa2multi.pl	usr/share/bwa
+debian/bash_completion/*	etc/bash_completion.d

-- 
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