[med-svn] r12623 - in trunk/packages/gmod/gbrowse/trunk/debian: . patches

[olivier sallou]

Author: osallou-guest
Date: 2012-12-15 08:27:24 +0000 (Sat, 15 Dec 2012)
New Revision: 12623

Modified:
   trunk/packages/gmod/gbrowse/trunk/debian/changelog
   trunk/packages/gmod/gbrowse/trunk/debian/control
   trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch
   trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch
   trunk/packages/gmod/gbrowse/trunk/debian/patches/skip_check_installed_test.patch
Log:
New upstream release control and patches updates (offset updates)

Modified: trunk/packages/gmod/gbrowse/trunk/debian/changelog
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/changelog	2012-12-14 18:15:11 UTC (rev 12622)
+++ trunk/packages/gmod/gbrowse/trunk/debian/changelog	2012-12-15 08:27:24 UTC (rev 12623)
@@ -1,3 +1,12 @@
+gbrowse (2.54-1) UNRELEASED; urgency=low
+
+  * New upstream release
+  * debian/control: increase min bio-graphics version
+
+  Waiting for libbio-graphics-perl update
+
+ -- Olivier Sallou <osallou at debian.org>  Sat, 15 Dec 2012 09:11:03 +0100
+
 gbrowse (2.51+dfsg-1) unstable; urgency=low
 
   [ Olivier Sallou ]

Modified: trunk/packages/gmod/gbrowse/trunk/debian/control
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/control	2012-12-14 18:15:11 UTC (rev 12622)
+++ trunk/packages/gmod/gbrowse/trunk/debian/control	2012-12-15 08:27:24 UTC (rev 12623)
@@ -2,7 +2,7 @@
 Section: science
 Priority: optional
 Build-Depends: bioperl (>= 1.6.901), debhelper (>= 8),
- libbio-graphics-perl (>= 2.28), libcapture-tiny-perl, libcgi-session-perl (>= 4.02),
+ libbio-graphics-perl (>= 2.31), libcapture-tiny-perl, libcgi-session-perl (>= 4.02),
  libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl,
  libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,
  perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3,libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>= 1.9),
@@ -19,7 +19,7 @@
 Package: gbrowse
 Architecture: all
 Depends: ${misc:Depends}, ${perl:Depends},
- bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.28),
+ bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.31),
  libcgi-session-perl (>= 4.02),
  libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl,
  libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl,

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch	2012-12-14 18:15:11 UTC (rev 12622)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch	2012-12-15 08:27:24 UTC (rev 12623)
@@ -206,7 +206,7 @@
  sub ACTION_install {
      my $self = shift;
      my $prefix = $self->install_base || $self->prefix || '';
-@@ -773,8 +850,9 @@
+@@ -776,8 +853,9 @@
  sub guess_user_account_db {
      my $self = shift;
      if (eval "require DBD::SQLite; 1") {
@@ -220,7 +220,7 @@
      } else {
 --- a/conf/GBrowse.conf
 +++ b/conf/GBrowse.conf
-@@ -161,9 +161,9 @@
+@@ -163,9 +163,9 @@
  # "user_accounts" is true, then GBrowse
  # will attempt to use its internal user accounts database
  # to authenticate and/or register users.

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch	2012-12-14 18:15:11 UTC (rev 12622)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/manpages.patch	2012-12-15 08:27:24 UTC (rev 12623)
@@ -178,7 +178,7 @@
  =head2 userdata()
  
    $path = $source->userdata(@path_components)
-@@ -855,6 +861,8 @@
+@@ -871,6 +877,8 @@
    croak "Do not call make_link() on the DataSource. Call it on the Render object";
  }
  
@@ -187,7 +187,7 @@
  =item $db = $dsn->databases
  
  Return all named databases from [name:database] tracks.
-@@ -1100,6 +1108,8 @@
+@@ -1116,6 +1124,8 @@
      %DB_SETTINGS = ();
  }
  

Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/skip_check_installed_test.patch
===================================================================
--- trunk/packages/gmod/gbrowse/trunk/debian/patches/skip_check_installed_test.patch	2012-12-14 18:15:11 UTC (rev 12622)
+++ trunk/packages/gmod/gbrowse/trunk/debian/patches/skip_check_installed_test.patch	2012-12-15 08:27:24 UTC (rev 12623)
@@ -6,7 +6,7 @@
 Forwarded: not-needed
 --- a/install_util/GBrowseInstall.pm
 +++ b/install_util/GBrowseInstall.pm
-@@ -633,7 +633,7 @@
+@@ -636,7 +636,7 @@
  	my $copied = $self->copy_if_modified($_=>'blib');
  	if ($copied || !$self->up_to_date('_build/config_data',"blib/$_")) {
  	    $self->substitute_in_place("blib/$_");
@@ -15,7 +15,7 @@
  	}
      }
  
-@@ -695,7 +695,7 @@
+@@ -698,7 +698,7 @@
  	my $copied = $self->copy_if_modified($base=>'blib');
  	if ($copied or !$self->up_to_date('_build/config_data',"blib/$base")) {
  	    $self->substitute_in_place("blib/$base");
@@ -24,7 +24,7 @@
  	}
      }
  }
-@@ -733,7 +733,7 @@
+@@ -736,7 +736,7 @@
  	    my $copied = $self->copy_if_modified($_=>'blib');
  	    if ($copied or !$self->up_to_date('_build/config_data',"blib/$_")) {
  		$self->substitute_in_place("blib/$_");