[med-svn] r12686 - in trunk/packages: . goby-framework goby-framework/trunk goby-framework/trunk/debian goby-framework/trunk/debian/source

[Andreas Tille]

Author: tille
Date: 2012-12-18 16:41:41 +0000 (Tue, 18 Dec 2012)
New Revision: 12686

Added:
   trunk/packages/goby-framework/
   trunk/packages/goby-framework/trunk/
   trunk/packages/goby-framework/trunk/debian/
   trunk/packages/goby-framework/trunk/debian/changelog
   trunk/packages/goby-framework/trunk/debian/compat
   trunk/packages/goby-framework/trunk/debian/control
   trunk/packages/goby-framework/trunk/debian/copyright
   trunk/packages/goby-framework/trunk/debian/rules
   trunk/packages/goby-framework/trunk/debian/source/
   trunk/packages/goby-framework/trunk/debian/source/format
   trunk/packages/goby-framework/trunk/debian/watch
Log:
When trying to upgrade the package igv I noticed goby which might be worth packaging on its own


Added: trunk/packages/goby-framework/trunk/debian/changelog
===================================================================
--- trunk/packages/goby-framework/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/changelog	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1,5 @@
+goby-framework (2.1.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 18 Dec 2012 17:11:24 +0100

Added: trunk/packages/goby-framework/trunk/debian/compat
===================================================================
--- trunk/packages/goby-framework/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/compat	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1 @@
+9

Added: trunk/packages/goby-framework/trunk/debian/control
===================================================================
--- trunk/packages/goby-framework/trunk/debian/control	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/control	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1,28 @@
+Source: goby-framework
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Homepage: <homepage>
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/goby-framework/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/goby-framework/trunk/
+
+Package: libgoby-java
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: store next-generation sequencing data and intermediary analysis results
+ Goby is a next-gen data management framework designed to facilitate the
+ implementation of efficient data analysis pipelines.
+ .
+ Goby provides very efficient file formats to store next-generation
+ sequencing data and intermediary analysis results. Goby 1.x files were
+ compressed with GZip. In Goby 2.0, we introduced novel compression
+ approaches that result in state of the art compression of alignment
+ data. Goby 2.0 files can compress to a few percent of a BAM file and are
+ often smaller than CRAM files.  
+ .
+ Goby also provides utilities that implement common next-gen data
+ computations. We design these utilities to make them relatively easy to
+ use, yet very efficient.

Added: trunk/packages/goby-framework/trunk/debian/copyright
===================================================================
--- trunk/packages/goby-framework/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/copyright	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Goby
+Upstream-Contact: goby-framework at googlegroups.com
+Source: http://chagall.med.cornell.edu/goby/releases/archive/
+        https://github.com/CampagneLaboratory/goby/tags
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: GPL-3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPL-3
+
+License: GPL-3
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ On Debian systems you can find the full text of the GPL3 at
+ /usr/share/common-licenses/GPL-3
\ No newline at end of file

Added: trunk/packages/goby-framework/trunk/debian/rules
===================================================================
--- trunk/packages/goby-framework/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/rules	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/goby-framework/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/goby-framework/trunk/debian/source/format
===================================================================
--- trunk/packages/goby-framework/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/source/format	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/goby-framework/trunk/debian/watch
===================================================================
--- trunk/packages/goby-framework/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/goby-framework/trunk/debian/watch	2012-12-18 16:41:41 UTC (rev 12686)
@@ -0,0 +1,2 @@
+version=3
+https://github.com/CampagneLaboratory/goby/tags .*/(\d[\d\.]+)\.tar\.gz