[med-svn] r9550 - trunk/packages/mrbayes/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-02-02 16:10:51 +0000 (Thu, 02 Feb 2012)
New Revision: 9550

Added:
   trunk/packages/mrbayes/trunk/debian/mrbayes-doc.doc-base
   trunk/packages/mrbayes/trunk/debian/mrbayes-doc.install
Modified:
   trunk/packages/mrbayes/trunk/debian/changelog
   trunk/packages/mrbayes/trunk/debian/control
   trunk/packages/mrbayes/trunk/debian/rules
Log:
Added doc package and uploaded to unstable


Modified: trunk/packages/mrbayes/trunk/debian/changelog
===================================================================
--- trunk/packages/mrbayes/trunk/debian/changelog	2012-02-02 15:42:18 UTC (rev 9549)
+++ trunk/packages/mrbayes/trunk/debian/changelog	2012-02-02 16:10:51 UTC (rev 9550)
@@ -1,13 +1,19 @@
-mrbayes (3.2.0+dfsg-1) UNRELEASED; urgency=low
+mrbayes (3.2.0+dfsg-1) unstable; urgency=low
 
   * New upstream version uploaded to Debian
   * debian/patches: removed because applied upstream
-  * debian/control: ehanced description of mrbayes-dbg
+  * debian/control:
+     - ehanced description of mrbayes-dbg
+     - added doc package featuring the provided manual
   * debian/watch: call debian/get-orig-source to fetch sources
     for PDF documentation
   * debian/get-orig-source: Create new tarball including source
     for PDF documentation.
-  * debian/rules: get-orig-source target
+  * debian/rules:
+     - get-orig-source target
+     - prevent dh_compress from compressing docs
+  * debian/mrbayes-doc.install: install documentation
+  * debian/mrbayes-doc.doc-base
 
  -- Andreas Tille <tille at debian.org>  Sat, 21 Jan 2012 21:07:23 +0100
 

Modified: trunk/packages/mrbayes/trunk/debian/control
===================================================================
--- trunk/packages/mrbayes/trunk/debian/control	2012-02-02 15:42:18 UTC (rev 9549)
+++ trunk/packages/mrbayes/trunk/debian/control	2012-02-02 16:10:51 UTC (rev 9550)
@@ -17,6 +17,7 @@
 Package: mrbayes
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, libhmsbeagle1
+Suggests: mrbayes-doc
 Description: Bayesian Inference of Phylogeny
  Bayesian inference of phylogeny is based upon a quantity called the posterior
  probability distribution of trees, which is the probability of a tree 
@@ -29,7 +30,7 @@
 Package: mrbayes-mpi
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, mpi-default-bin
-Suggests: mpi-default
+Suggests: mpi-default, mrbayes-doc
 Description: Bayesian Inference of Phylogeny - mpi version
  Bayesian inference of phylogeny is based upon a quantity called the posterior
  probability distribution of trees, which is the probability of a tree
@@ -59,3 +60,20 @@
  The package provides the debug symbols that are otherwise stripped from
  the binaries to reduce the footprint of the package. This package can be
  installed to help debugging of problems when running mrbayes.
+
+Package: mrbayes-doc
+Architecture: all
+Priority: extra
+Section: doc
+Depends: ${misc:Depends}
+Enhances: mrbayes
+Description: Bayesian Inference of Phylogeny - manual
+ Bayesian inference of phylogeny is based upon a quantity called the posterior
+ probability distribution of trees, which is the probability of a tree
+ conditioned on the observations. The conditioning is accomplished using
+ Bayes's theorem. The posterior probability distribution of trees is
+ impossible to calculate analytically; instead, MrBayes uses a simulation
+ technique called Markov chain Monte Carlo (or MCMC) to approximate the
+ posterior probabilities of trees.
+ .
+ This package provides the manual vor MrBayes.

Added: trunk/packages/mrbayes/trunk/debian/mrbayes-doc.doc-base
===================================================================
--- trunk/packages/mrbayes/trunk/debian/mrbayes-doc.doc-base	                        (rev 0)
+++ trunk/packages/mrbayes/trunk/debian/mrbayes-doc.doc-base	2012-02-02 16:10:51 UTC (rev 9550)
@@ -0,0 +1,15 @@
+Document: mrbayes-doc
+Title:  MrBayes version 3.2 Manual: Tutorials and Model Summaries
+Author: Fredrik Ronquist, John Huelsenbeck and Maxim Teslenko
+Abstract: Bayesian Inference of Phylogeny
+ Bayesian inference of phylogeny is based upon a quantity called the posterior
+ probability distribution of trees, which is the probability of a tree
+ conditioned on the observations. The conditioning is accomplished using
+ Bayes's theorem. The posterior probability distribution of trees is
+ impossible to calculate analytically; instead, MrBayes uses a simulation
+ technique called Markov chain Monte Carlo (or MCMC) to approximate the
+ posterior probabilities of trees.
+Section: Science/Biology
+
+Format: pdf
+Files: /usr/share/doc/mrbayes/Manual_MrBayes_v3.2.0_draft.pdf

Added: trunk/packages/mrbayes/trunk/debian/mrbayes-doc.install
===================================================================
--- trunk/packages/mrbayes/trunk/debian/mrbayes-doc.install	                        (rev 0)
+++ trunk/packages/mrbayes/trunk/debian/mrbayes-doc.install	2012-02-02 16:10:51 UTC (rev 9550)
@@ -0,0 +1 @@
+documentation/Manual*.pdf	usr/share/doc/mrbayes

Modified: trunk/packages/mrbayes/trunk/debian/rules
===================================================================
--- trunk/packages/mrbayes/trunk/debian/rules	2012-02-02 15:42:18 UTC (rev 9549)
+++ trunk/packages/mrbayes/trunk/debian/rules	2012-02-02 16:10:51 UTC (rev 9550)
@@ -32,5 +32,8 @@
 override_dh_strip:
 	dh_strip --dbg-package=mrbayes-dbg
 
+override_dh_compress:
+	dh_compress --exclude=.pdf
+
 get-orig-source:
 	uscan --verbose --force-download