[med-svn] [SCM] tophat branch, master, updated. upstream/1.4.0-38-ga7aaa86

[Charles Plessy]

The following commit has been merged in the master branch:
commit e5b5640c7f6894b7a962d216b9ecfda7342d4635
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Feb 6 13:03:46 2012 +0900

    Recommend bowtie.

diff --git a/debian/control b/debian/control
index 355b199..dffb0e7 100644
--- a/debian/control
+++ b/debian/control
@@ -16,6 +16,7 @@ Package: tophat
 Architecture: any
 Pre-Depends: dpkg (>= 1.15.6~)
 Depends: ${shlibs:Depends}, ${misc:Depends}, python (>=2.6.6-3~)
+Recommends: bowtie
 Description: fast splice junction mapper for RNA-Seq reads
  TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
  high-throughput short read aligner Bowtie, and then analyzes the

-- 
A spliced read mapper for RNA-Seq