[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-1-g5a1ded9

[Carlos Borroto]

The following commit has been merged in the master branch:
commit 5a1ded94b629eb64924ddc61cc712e0161928c49
Author: Carlos Borroto <carlos.borroto at gmail.com>
Date:   Mon Feb 6 09:10:58 2012 -0500

    adds bowtie as a dependency and recommends cufflinks

diff --git a/debian/changelog b/debian/changelog
index 4e24344..3f26d5e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+tophat (1.4.1-1) UNRELEASED; urgency=low
+
+  [ Carlos Borroto ]
+  * added bowtie as a binary dependency
+  * recommend cufflinks
+
+ -- Carlos Borroto <carlos.borroto at gmail.com>  Mon, 06 Feb 2012 09:02:16 -0500
+
 tophat (1.4.1-1) unstable; urgency=low
 
   * Team upload.
diff --git a/debian/control b/debian/control
index d619294..e20d47b 100644
--- a/debian/control
+++ b/debian/control
@@ -15,8 +15,8 @@ Vcs-Browser: http://git.debian.org/?p=debian-med/tophat.git
 Package: tophat
 Architecture: any
 Pre-Depends: dpkg (>= 1.15.6~)
-Depends: ${shlibs:Depends}, ${misc:Depends}, python (>=2.6.6-3~)
-Recommends: bowtie
+Depends: ${shlibs:Depends}, ${misc:Depends}, python (>=2.6.6-3~), bowtie
+Recommends: cufflinks
 Description: fast splice junction mapper for RNA-Seq reads
  TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra
  high-throughput short read aligner Bowtie, and then analyzes the

-- 
A spliced read mapper for RNA-Seq