[med-svn] r9665 - in trunk/packages/rostlab: . libai-fann-perl/trunk/debian libzerg profphd/trunk/debian proftmb proftmb/trunk proftmb/trunk/debian proftmb/trunk/debian/source reprof/tags reprof/trunk/debian

Wed Feb 15 13:19:10 UTC 2012

Author: lkajan-guest
Date: 2012-02-15 13:19:10 +0000 (Wed, 15 Feb 2012)
New Revision: 9665

Added:
   trunk/packages/rostlab/libzerg/branches/
   trunk/packages/rostlab/proftmb/
   trunk/packages/rostlab/proftmb/tags/
   trunk/packages/rostlab/proftmb/trunk/
   trunk/packages/rostlab/proftmb/trunk/debian/
   trunk/packages/rostlab/proftmb/trunk/debian/changelog
   trunk/packages/rostlab/proftmb/trunk/debian/compat
   trunk/packages/rostlab/proftmb/trunk/debian/control
   trunk/packages/rostlab/proftmb/trunk/debian/copyright
   trunk/packages/rostlab/proftmb/trunk/debian/rules
   trunk/packages/rostlab/proftmb/trunk/debian/source/
   trunk/packages/rostlab/proftmb/trunk/debian/source/format
   trunk/packages/rostlab/proftmb/trunk/debian/upstream
   trunk/packages/rostlab/proftmb/trunk/debian/watch
Modified:
   trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
   trunk/packages/rostlab/profphd/trunk/debian/upstream
   trunk/packages/rostlab/reprof/tags/
   trunk/packages/rostlab/reprof/trunk/debian/changelog
   trunk/packages/rostlab/reprof/trunk/debian/rules
Log:
proftmb Debianization

Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
===================================================================

--- trunk/packages/rostlab/libai-fann-perl/trunk/debian/control	2012-02-15 12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/control	2012-02-15 13:19:10 UTC (rev 9665)
@@ -14,7 +14,7 @@
 Section: perl
 Priority: optional
 Architecture: any
-Depends: ${perl:Depends}, ${shlibs:Depends}
+Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}
 Description: Perl wrapper for the FANN library
  This module provides a Perl wrapper for the FANN library
  (http://leenissen.dk/fann/wp/).

Modified: trunk/packages/rostlab/profphd/trunk/debian/upstream
===================================================================
--- trunk/packages/rostlab/profphd/trunk/debian/upstream	2012-02-15 12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/profphd/trunk/debian/upstream	2012-02-15 13:19:10 UTC (rev 9665)
@@ -7,7 +7,7 @@
    Number: 1
    Pages: 55-72
    Year: 1994
-   URL: http://rostlab.org/
+   URL: http://www.ncbi.nlm.nih.gov/pubmed/8066087
    PMID: 8066087
  - Author: Rost, B. and Sander, C.
    Title: 'Conservation and prediction of solvent accessibility in protein families.'
@@ -16,7 +16,7 @@
    Number: 3
    Pages: 216-26
    Year: 1994
-   URL: http://rostlab.org/
+   URL: http://www.ncbi.nlm.nih.gov/pubmed/7892171
    PMID: 7892171
  - Author: Rost, B., Casadio, R., Fariselli, P., and Sander, C.
    Title: 'Transmembrane helices predicted at 95% accuracy.'
@@ -25,5 +25,5 @@
    Number: 3
    Pages: 521-33
    Year: 1995
-   URL: http://rostlab.org/
+   URL: http://www.ncbi.nlm.nih.gov/pubmed/7795533
    PMID: 7795533


Property changes on: trunk/packages/rostlab/proftmb
___________________________________________________________________
Added: svn:ignore
   + tarballs
build-area



Property changes on: trunk/packages/rostlab/proftmb/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
   + 1


Added: trunk/packages/rostlab/proftmb/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/changelog	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,5 @@
+proftmb (1.1.8-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #659964)
+
+ -- Laszlo Kajan <lkajan at rostlab.org>  Wed, 15 Feb 2012 12:46:59 +0100

Added: trunk/packages/rostlab/proftmb/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/compat	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1 @@
+8

Added: trunk/packages/rostlab/proftmb/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/control	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/control	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,19 @@
+Source: proftmb
+Section: science
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Laszlo Kajan <lkajan at rostlab.org>
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8.0.0), autotools-dev, help2man, opt
+Standards-Version: 3.9.2
+Homepage: http://rostlab.org/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/proftmb/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/proftmb/trunk/
+
+Package: proftmb
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: pp-popularity-contest
+Description: per-residue prediction of bacterial transmembrane beta barrels
+ proftmb provides a four state (up-strand, down-strand, periplasmic loop, and
+ outer loop) per-residue prediction for the protein.

Added: trunk/packages/rostlab/proftmb/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/copyright	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,24 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: proftmb
+Source: ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz
+
+Files: *
+Copyright: 2004 Henry Bigelow <hrbigelow at gmail.com>, Columbia University in the City of New York, USA
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

Added: trunk/packages/rostlab/proftmb/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/rules	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=1
+
+%:
+	dh $@ --parallel


Property changes on: trunk/packages/rostlab/proftmb/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/rostlab/proftmb/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/source/format	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/rostlab/proftmb/trunk/debian/upstream
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/upstream	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,12 @@
+Name: proftmb
+Contact: Henry Bigelow <hrbigelow at gmail.com>
+Homepage: http://rostlab.org/
+Reference:
+ - Author: Bigelow, H. and Rost, B.
+   Title: 'PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.'
+   Journal: Nucleic Acids Res
+   Volume: 34(Web Server issue)
+   Pages: W186-8
+   year: 2006
+   URL: http://www.ncbi.nlm.nih.gov/pubmed/16844988
+   PMID: 16844988

Added: trunk/packages/rostlab/proftmb/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/watch	2012-02-15 13:19:10 UTC (rev 9665)
@@ -0,0 +1,3 @@
+version=3
+
+ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz debian uupdate


Property changes on: trunk/packages/rostlab/reprof/tags
___________________________________________________________________
Added: svn:ignore
   + build-area
tarballs


Modified: trunk/packages/rostlab/reprof/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/changelog	2012-02-15 12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/reprof/trunk/debian/changelog	2012-02-15 13:19:10 UTC (rev 9665)
@@ -1,3 +1,9 @@
+reprof (1.0.1-2) UNRELEASED; urgency=low
+
+  * NOT RELEASED YET
+
+ -- Laszlo Kajan <lkajan at rostlab.org>  Fri, 13 Jan 2012 19:00:16 +0100
+
 reprof (1.0.1-1) unstable; urgency=low
 
   * New upstream release

Modified: trunk/packages/rostlab/reprof/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/rules	2012-02-15 12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/reprof/trunk/debian/rules	2012-02-15 13:19:10 UTC (rev 9665)
@@ -7,5 +7,6 @@
 %:
 	dh $@ 
 
+.PHONY: override_dh_compress
 override_dh_compress:
 	dh_compress -Xexample.Q


