[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-5-g8de8d3a

[Andreas Tille]

The following commit has been merged in the master branch:
commit 22226a704da2d9e0f99dec949646b0bcf6fefeeb
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 18 08:23:06 2012 +0100

    Fix bug in changelog

diff --git a/debian/changelog b/debian/changelog
index 6538462..358fd9b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,15 @@
-tophat (1.4.1-1) UNRELEASED; urgency=low
+tophat (1.4.1-2) UNRELEASED; urgency=low
 
   [ Carlos Borroto ]
   * added bowtie as a binary dependency
   * suggests cufflinks
 
- -- Carlos Borroto <carlos.borroto at gmail.com>  Mon, 06 Feb 2012 09:02:16 -0500
+  [ Andreas Tille ]
+  * debian/patches/remove_cflag_handling_in_configure.patch: Enable better
+    support for different architectures
+    Closes: #660309
+
+ -- Andreas Tille <tille at debian.org>  Sat, 18 Feb 2012 08:22:50 +0100
 
 tophat (1.4.1-1) unstable; urgency=low
 
diff --git a/debian/control b/debian/control
index 52da20e..1b625e3 100644
--- a/debian/control
+++ b/debian/control
@@ -4,7 +4,8 @@ Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 DM-Upload-Allowed: yes
 Uploaders: Carlos Borroto <carlos.borroto at gmail.com>,
- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
+ Alexandre Mestiashvili <alex at biotec.tu-dresden.de>,
+ Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 8), autotools-dev, libbam-dev (>=0.1.16),
  zlib1g-dev, dh-autoreconf, python (>=2.6.6-3~), seqan-dev (>= 1.3~)
 Standards-Version: 3.9.2
diff --git a/debian/patches/series b/debian/patches/series
index 9c36db4..35999cd 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 debian_seqan.patch
 fix_includes_path.patch
+remove_cflag_handling_in_configure.patch

-- 
A spliced read mapper for RNA-Seq