[med-svn] r9703 - in trunk/packages/mipe/trunk/debian: . source
Andreas Tille
tille at alioth.debian.org
Sat Feb 18 15:12:43 UTC 2012
Author: tille
Date: 2012-02-18 15:12:43 +0000 (Sat, 18 Feb 2012)
New Revision: 9703
Added:
trunk/packages/mipe/trunk/debian/source/
trunk/packages/mipe/trunk/debian/source/format
Removed:
trunk/packages/mipe/trunk/debian/manpages
Modified:
trunk/packages/mipe/trunk/debian/changelog
trunk/packages/mipe/trunk/debian/compat
trunk/packages/mipe/trunk/debian/control
trunk/packages/mipe/trunk/debian/dirs
trunk/packages/mipe/trunk/debian/rules
trunk/packages/mipe/trunk/debian/upstream
Log:
(Heavily) updated packaging
Modified: trunk/packages/mipe/trunk/debian/changelog
===================================================================
--- trunk/packages/mipe/trunk/debian/changelog 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/changelog 2012-02-18 15:12:43 UTC (rev 9703)
@@ -2,15 +2,23 @@
[ Andreas Tille ]
* debian/control:
- - Fixed Vcs-Svn (missing svn/)
- - Updated Standards-Version to 3.8.1 (no changes needed)
+ - Fixed Vcs-Fields
+ - Updated Standards-Version to 3.9.2 (no changes needed)
+ - Depends: ${misc:Depends}, ${perl:Depends}
+ * debian/upstream: Added URL
+ * debian/source/format: 3.0 (quilt)
+ * debhelper 8 (control+compat)
+ * debian/rules: rewritten using short dh
+ * debian/install: install *.dtd and *.xsd
+ * debian/manpages: removed because unneeded
[ Charles Plessy ]
- * Documented informations in ‘debian/upstream-metadata.yaml’.
+ * Documented information in ‘debian/upstream-metadata.yaml’.
* Removed mention of the bibliographic reference in ‘debian/control’.
- -- Andreas Tille <tille at debian.org> Thu, 04 Jun 2009 09:43:47 +0200
+ -- Andreas Tille <tille at debian.org> Sat, 18 Feb 2012 15:39:00 +0100
+
mipe (1.1-3) unstable; urgency=low
* debian/control:
Modified: trunk/packages/mipe/trunk/debian/compat
===================================================================
--- trunk/packages/mipe/trunk/debian/compat 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/compat 2012-02-18 15:12:43 UTC (rev 9703)
@@ -1 +1 @@
-5
+8
Modified: trunk/packages/mipe/trunk/debian/control
===================================================================
--- trunk/packages/mipe/trunk/debian/control 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/control 2012-02-18 15:12:43 UTC (rev 9703)
@@ -7,15 +7,15 @@
Andreas Tille <tille at debian.org>,
Charles Plessy <plessy at debian.org>
Build-Depends-Indep: perl
-Build-Depends: debhelper (>= 5.0), quilt
-Standards-Version: 3.8.1
+Build-Depends: debhelper (>= 8), quilt
+Standards-Version: 3.9.2
Homepage: http://mipe.sourceforge.net
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mipe/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mipe/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mipe/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mipe/trunk/
Package: mipe
Architecture: all
-Depends: libxml-twig-perl, libxml-perl
+Depends: libxml-twig-perl, libxml-perl, ${misc:Depends}, ${perl:Depends}
Description: Tools to store PCR-derived data
MIPE provides a standard format to exchange and/or storage of all
information associated with PCR experiments using a flat text file. This will:
Modified: trunk/packages/mipe/trunk/debian/dirs
===================================================================
--- trunk/packages/mipe/trunk/debian/dirs 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/dirs 2012-02-18 15:12:43 UTC (rev 9703)
@@ -1,2 +1,2 @@
usr/bin
-usr/share/mipe
+usr/share/man/man1
Deleted: trunk/packages/mipe/trunk/debian/manpages
===================================================================
--- trunk/packages/mipe/trunk/debian/manpages 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/manpages 2012-02-18 15:12:43 UTC (rev 9703)
@@ -1,22 +0,0 @@
-csv2mipe.1
-genotype2mipe.1
-mipe06to07.1
-mipe08to09.1
-mipe0_9to1_0.1
-mipe2dbSTS.1
-mipe2fas.1
-mipe2genotypes.1
-mipe2html.1
-mipe2pcroverview.1
-mipe2pcrprimers.1
-mipe2putativesbeprimers.1
-mipe2sbeprimers.1
-mipe2snps.1
-mipeCheckSanity.1
-removePcrFromMipe.1
-removeSbeFromMipe.1
-removeSnpFromMipe.1
-sbe2mipe.1
-snp2mipe.1
-snpPosOnDesign.1
-snpPosOnSource.1
Modified: trunk/packages/mipe/trunk/debian/rules
===================================================================
--- trunk/packages/mipe/trunk/debian/rules 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/rules 2012-02-18 15:12:43 UTC (rev 9703)
@@ -1,81 +1,21 @@
#!/usr/bin/make -f
-# debian/rules for clustalw-mpi
-# Copyright 2004-2008 Steffen Moeller, Andreas Tille
+# debian/rules for mipe
+# Copyright 2012 Andreas Tille <tille at debian.org>
# see debian/copyright
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
-include /usr/share/quilt/quilt.make
+PKG := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
-.SUFFIXES: .pl .1
+%:
+ dh $@
-%.1: %.pl
- pod2man $< > $@
-
-SOURCES=csv2mipe.pl genotype2mipe.pl mipe06to07.pl mipe08to09.pl \
- mipe0_9to1_0.pl mipe2dbSTS.pl mipe2fas.pl mipe2genotypes.pl mipe2html.pl \
- mipe2pcroverview.pl mipe2pcrprimers.pl mipe2putativesbeprimers.pl mipe2sbeprimers.pl \
- mipe2snps.pl mipeCheckSanity.pl removePcrFromMipe.pl removeSbeFromMipe.pl \
- removeSnpFromMipe.pl sbe2mipe.pl snp2mipe.pl snpPosOnDesign.pl snpPosOnSource.pl
-
-MANPAGES=csv2mipe.1 genotype2mipe.1 mipe06to07.1 mipe08to09.1 \
- mipe0_9to1_0.1 mipe2dbSTS.1 mipe2fas.1 mipe2genotypes.1 mipe2html.1 \
- mipe2pcroverview.1 mipe2pcrprimers.1 mipe2putativesbeprimers.1 mipe2sbeprimers.1 \
- mipe2snps.1 mipeCheckSanity.1 removePcrFromMipe.1 removeSbeFromMipe.1 \
- removeSnpFromMipe.1 sbe2mipe.1 snp2mipe.1 snpPosOnDesign.1 snpPosOnSource.1
-
-CFLAGS = -Wall -g
-
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
- CFLAGS += -O0
-else
- CFLAGS += -O2
-endif
-
-configure:
-
-build: patch $(MANPAGES)
-
-clean: unpatch
- dh_testdir
- dh_testroot
- rm -f build-stamp configure-stamp
- dh_clean *.1
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
-
- # Add here commands to install the package into debian/mipe.
- cp *.dtd *.xsd $(CURDIR)/debian/mipe/usr/share/mipe/
+override_dh_install:
+ dh_install
+ # remove *.pl extension and create manpages using pod2man
for i in *.pl; do \
bname=`echo $$i | sed -e 's/.pl$$//'`; \
- cp $$i $(CURDIR)/debian/mipe/usr/bin/$$bname ; \
+ cp -a $$i $(CURDIR)/debian/$(PKG)/usr/bin/$$bname ; \
+ pod2man $$i > $(CURDIR)/debian/$(PKG)/usr/share/man/man1/$${bname}.1 ; \
done
-
-# Build architecture-dependent files here.
-binary-arch: build install
-# We have nothing to do by default.
-
-# Build architecture-independent files here.
-binary-indep: build install
- dh_testdir
- dh_testroot
- dh_installchangelogs
- dh_installdocs
- dh_installexamples
- dh_installman
- dh_compress
- dh_fixperms
- dh_perl
- dh_installdeb
- dh_shlibdeps
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install configure
Added: trunk/packages/mipe/trunk/debian/source/format
===================================================================
--- trunk/packages/mipe/trunk/debian/source/format (rev 0)
+++ trunk/packages/mipe/trunk/debian/source/format 2012-02-18 15:12:43 UTC (rev 9703)
@@ -0,0 +1 @@
+3.0 (quilt)
Modified: trunk/packages/mipe/trunk/debian/upstream
===================================================================
--- trunk/packages/mipe/trunk/debian/upstream 2012-02-18 01:23:39 UTC (rev 9702)
+++ trunk/packages/mipe/trunk/debian/upstream 2012-02-18 15:12:43 UTC (rev 9703)
@@ -9,4 +9,5 @@
Volume: 6
Pages: 114-120
Year: 2005
+ URL: http://users.comcen.com.au/~journals/mipeabs2005.htm
Watch: http://sf.net/mipe/ mipe-(.*)\.tar.gz
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