[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-8-ga4f771f

[Andreas Tille]

The following commit has been merged in the master branch:
commit a4f771fcef010911db33e3c3ec5cbe6b11484cdc
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 18 18:40:46 2012 +0100

    Added references in debian/upstream file

diff --git a/debian/changelog b/debian/changelog
index c974a69..3ce9c42 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -10,6 +10,7 @@ tophat (1.4.1-2) unstable; urgency=low
     support for different architectures (Thanks to Peter Michael Green
     <plugwash at p10link.net> for the patch)
     Closes: #660309
+  * debian/upstream: Added references
 
  -- Andreas Tille <tille at debian.org>  Sat, 18 Feb 2012 08:22:50 +0100
 
diff --git a/debian/upstream b/debian/upstream
new file mode 100644
index 0000000..dad31ac
--- /dev/null
+++ b/debian/upstream
@@ -0,0 +1,16 @@
+Contact: Cole Trapnell <cole at cs.umd.edu>
+Homepage: http://tophat.cbcb.umd.edu/
+Name: TopHat
+Reference:
+  author: Cole Trapnell1, Lior Pachter and Steven L. Salzberg
+  title: TopHat: discovering splice junctions with RNA-Seq
+  journal: Bioinformatics
+  volume: 25
+  number: 9
+  pages: 1105-1111
+  year: 2009
+  DOI: 10.1093/bioinformatics/btp120
+  PMID: 19289445
+  URL: http://bioinformatics.oxfordjournals.org/content/25/9/1105.short
+  eprint: http://bioinformatics.oxfordjournals.org/content/25/9/1105.full.pdf+html
+  license: Open Access

-- 
A spliced read mapper for RNA-Seq