[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta5-3-g4cbe5c0

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit 4cbe5c0bcda26d66da8fc5a4b77654701ef32de6
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Tue Feb 21 18:52:00 2012 +0100

    set to UNRELEASED, debian/rules help2man for missing man pages

diff --git a/debian/bowtie2.dirs b/debian/bowtie2.dirs
new file mode 100644
index 0000000..fcf16f2
--- /dev/null
+++ b/debian/bowtie2.dirs
@@ -0,0 +1 @@
+usr/share/man/man1
diff --git a/debian/changelog b/debian/changelog
index 88e45b0..4cbb8f2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,5 @@
-bowtie2 (2.0.0-beta5-1) unstable; urgency=low
+bowtie2 (2.0.0-beta5-1) UNRELEASED; urgency=low
 
-  * initial release
- -- Alex Mestiashvili <alex at biotec.tu-dresden.de>  Fri, 17 Feb 2012 11:31:53 +0100
+  * Initial release (Closes: #660762)
+
+ -- Alex Mestiashvili <alex at biotec.tu-dresden.de>  Tue, 21 Feb 2012 18:51:53 +0100
diff --git a/debian/rules b/debian/rules
index c0f16be..955b638 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,33 +1,21 @@
 #!/usr/bin/make -f
-# debian/rules for bowtie2
-# Andreas Tille <tille at debian.org>
-# GPL
 
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-#pkg=bowtie2
+pkg=bowtie2
 
 %:
 	dh $@
 
-#override_dh_auto_build:
-#	$(MAKE) allall
-#
-#override_dh_auto_install:
-#	for bin in bowtie2 bowtie2-build bowtie2-inspect ; do \
-#	    help2man $(CURDIR)/$${bin} > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/$${bin}.1 ; \
-#	done
-#	help2man --name="ultrafast memory-efficient short read aligner" --no-info \
-#             $(CURDIR)/bowtie2 > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2.1
-#	help2man --name="building a colorspace index for bowtie2" --no-info \
-#             $(CURDIR)/bowtie2-build > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2-build.1
-#	help2man --name="extracts information from a bowtie2 index" --no-info \
-#             $(CURDIR)/bowtie2-inspect > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2-inspect.1
-#
-#override_dh_auto_clean:
-#	rm -f .bowtie2*
-#	dh_auto_clean
+override_dh_auto_install:
+	mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
+	for bin in bowtie2 bowtie2-build bowtie2-inspect bowtie2-align; do \
+	    help2man $(CURDIR)/$${bin} > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/$${bin}.1 ; \
+	done
+	help2man --name="ultrafast memory-efficient short read aligner" --no-info \
+             $(CURDIR)/bowtie2 > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2.1
+	help2man --name="building a colorspace index for bowtie2" --no-info \
+             $(CURDIR)/bowtie2-build > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2-build.1
+	help2man --name="extracts information from a bowtie2 index" --no-info \
+             $(CURDIR)/bowtie2-inspect > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie2-inspect.1
 
 get-orig-source:
 	. debian/get-orig-source

-- 
ultrafast memory-efficient short read aligner