[med-svn] [SCM] tophat annotated tag, oneiric-ppa/1.3.3-1_oneiric3, created. oneiric-ppa/1.3.3-1_oneiric3

[Carlos Borroto]

The annotated tag, oneiric-ppa/1.3.3-1_oneiric3 has been created
        at  dd7932bb8e5b2d711f11bea3eae8749af22fc31d (tag)
   tagging  4d2103892dcdf7b7c9f96bca4ad96ea3f03d9ba0 (commit)
  replaces  upstream/1.3.3
 tagged by  Carlos Borroto
        on  Wed Jan 4 13:50:10 2012 -0500

- Shortlog ------------------------------------------------------------
Debian release 1.3.3-1~oneiric3

Alexandre Mestiashvili (14):
      Merge commit 'upstream/1.3.3'
      New upstream release 1.3.3
      Removed dh-make template from watch file
      some cleanup in debian/* ;see debian/changelog for details
      added patch to fix ax_bam.m4 , changed rules to use autoreconf
      src/bam_merge.cpp contains bam/bam.h bam/sam.h headers ,
      No need in fix_configure.patch patch , replaced by bam2samtools.
      Added Build-Depends: dh-autoreconf
      Use seqan lib from debian and not from source
      removed wrong new line in debian/control
      Added build-dependency quilt
      in new seqan v1.3  function reverseInPlace seems to be renamed to reverse
      debian/control python-all denepdency
      Added seqan-dev dependency

Carlos Borroto (7):
      Imported Debian patch 1.3.1-1ppa1~lucid1
      Uploaded tophat_1.3.3-1~oneiric1_source.changes to Debian Med's PPA
      Revert "in new seqan v1.3  function reverseInPlace seems to be renamed to reverse"
      Revert to use SeqAn 1.2 namespace
      Removed quilt patch management
      Uploaded tophat_1.3.3-1~oneiric2_source.changes to Debian Med's PPA.
      Adds: Pre-depend on dpkg (>= 1.15.6) for xz compression

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A spliced read mapper for RNA-Seq