[med-svn] [SCM] tophat branch, master, updated. upstream/1.3.3-18-ga0babf6

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit a0babf6711a54ffcd216d874a3ab129c0624950f
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Jan 5 13:01:03 2012 +0100

    Removed quilt patch management.

diff --git a/debian/changelog b/debian/changelog
index 3efada5..c1db1bf 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -21,8 +21,10 @@ tophat (1.3.3-1) UNRELEASED; urgency=low
   * debian/rules
     - removed dh-make template 
   * debian/control Added python dependency to binary package
+  * debian/control Description shouldn't start with package name 
+  * debian/rules removed quilt patch management
 
- -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Tue, 20 Dec 2011 09:45:46 +0100
+ -- Alexandre Mestiashvili <alex at biotec.tu-dresden.de>  Thu, 05 Jan 2012 13:05:34 +0100
 
 tophat (1.3.1-1ppa1~lucid1) lucid; urgency=low
 
diff --git a/debian/control b/debian/control
index 589bb89..68d6f0c 100644
--- a/debian/control
+++ b/debian/control
@@ -6,8 +6,7 @@ DM-Upload-Allowed: yes
 Uploaders: Carlos Borroto <carlos.borroto at gmail.com>,
  Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
 Build-Depends: debhelper (>= 8), autotools-dev, libbam-dev (>=0.1.16),
- zlib1g-dev, dh-autoreconf, quilt (>= 0.46-7~), python-all (>=2.6.6-3~),
- seqan-dev
+ zlib1g-dev, dh-autoreconf, python-all (>=2.6.6-3~), seqan-dev
 Standards-Version: 3.9.2
 Homepage: http://tophat.cbcb.umd.edu/
 Vcs-Git: git://git.debian.org/debian-med/tophat.git
@@ -16,7 +15,7 @@ Vcs-Browser: http://git.debian.org/?p=debian-med/cufflinks.git;a=summary
 Package: tophat
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}, python (>=2.6.6-3~)
-Description: TopHat is a fast splice junction mapper for RNA-Seq reads
+Description: is a fast splice junction mapper for RNA-Seq reads
  It aligns RNA-Seq reads to mammalian-sized genomes using the ultra
  high-throughput short read aligner Bowtie, and then analyzes the
  mapping results to identify splice junctions between exons. 
diff --git a/debian/rules b/debian/rules
index d5c6c63..4ec2e3b 100755
--- a/debian/rules
+++ b/debian/rules
@@ -6,13 +6,5 @@ export DH_VERBOSE=1
 %:
 	dh $@ --with autoreconf
 
-override_dh_auto_clean:
-	dh_quilt_patch
-	dh_auto_clean
-
-override_dh_clean:
-	dh_quilt_unpatch
-	dh_clean
-
 override_dh_builddeb:
 	dh_builddeb -- -Z xz

-- 
A spliced read mapper for RNA-Seq