[med-svn] r9177 - in trunk/packages: . macs macs/trunk macs/trunk/debian macs/trunk/debian/source
Timothy Booth
tbooth-guest at alioth.debian.org
Thu Jan 5 18:34:50 UTC 2012
Author: tbooth-guest
Date: 2012-01-05 18:34:50 +0000 (Thu, 05 Jan 2012)
New Revision: 9177
Added:
trunk/packages/macs/
trunk/packages/macs/trunk/
trunk/packages/macs/trunk/debian/
trunk/packages/macs/trunk/debian/README.Debian
trunk/packages/macs/trunk/debian/README.source
trunk/packages/macs/trunk/debian/changelog
trunk/packages/macs/trunk/debian/compat
trunk/packages/macs/trunk/debian/control
trunk/packages/macs/trunk/debian/copyright
trunk/packages/macs/trunk/debian/docs
trunk/packages/macs/trunk/debian/rules
trunk/packages/macs/trunk/debian/source/
trunk/packages/macs/trunk/debian/source/format
trunk/packages/macs/trunk/debian/watch
Log:
Packaging of macs - new package by Tim and Soon
Added: trunk/packages/macs/trunk/debian/README.Debian
===================================================================
--- trunk/packages/macs/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/macs/trunk/debian/README.Debian 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,6 @@
+macs for Debian
+---------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com> Thu, 05 Jan 2012 10:52:22 +0000
Added: trunk/packages/macs/trunk/debian/README.source
===================================================================
--- trunk/packages/macs/trunk/debian/README.source (rev 0)
+++ trunk/packages/macs/trunk/debian/README.source 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,9 @@
+macs for Debian
+---------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
Added: trunk/packages/macs/trunk/debian/changelog
===================================================================
--- trunk/packages/macs/trunk/debian/changelog (rev 0)
+++ trunk/packages/macs/trunk/debian/changelog 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,19 @@
+macs (2.0.9.1-1ubuntu3) lucid; urgency=low
+
+ * Fix typo in debian/rules
+
+ -- Tim Booth <tbooth at ceh.ac.uk> Thu, 05 Jan 2012 18:22:46 +0000
+
+macs (2.0.9.1-1ubuntu2) lucid; urgency=low
+
+ * Package for PPA
+ * Packaged from version 2.0.9-1
+ * Changed debian/rules to override dh_auto_clean to remove *.c files
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com> Thu, 05 Jan 2012 13:10:02 +0000
+
+macs (2.0.9.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- H. Soon Gweon (Key for package building) <soonio at gmail.com> Thu, 05 Jan 2012 10:52:22 +0000
Added: trunk/packages/macs/trunk/debian/compat
===================================================================
--- trunk/packages/macs/trunk/debian/compat (rev 0)
+++ trunk/packages/macs/trunk/debian/compat 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1 @@
+8
Added: trunk/packages/macs/trunk/debian/control
===================================================================
--- trunk/packages/macs/trunk/debian/control (rev 0)
+++ trunk/packages/macs/trunk/debian/control 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,22 @@
+Source: macs
+Section: science
+Priority: extra
+Maintainer: Tim Booth <tbooth at ceh.ac.uk>, H. Soon Gweon <hyugwe at ceh.ac.uk>
+Build-Depends: debhelper (>= 8.0.0), cython (>= 0.15), python-dev
+Standards-Version: 3.9.2
+Homepage: https://github.com/taoliu/MACS/
+#Vcs-Git: git://git.debian.org/collab-maint/macs.git
+#Vcs-Browser: http://git.debian.org/?p=collab-maint/macs.git;a=summary
+
+Package: macs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Model-based Analysis of ChIP-Seq on short reads sequencers
+ MACS empirically models the length of the sequenced ChIP fragments, which
+ tends to be shorter than sonication or library construction size estimates,
+ and uses it to improve the spatial resolution of predicted binding sites.
+ MACS also uses a dynamic Poisson distribution to effectively capture local
+ biases in the genome sequence, allowing for more sensitive and robust
+ prediction. MACS compares favorably to existing ChIP-Seq peak-finding
+ algorithms, is publicly available open source, and can be used for ChIP-Seq
+ with or without control samples.
Added: trunk/packages/macs/trunk/debian/copyright
===================================================================
--- trunk/packages/macs/trunk/debian/copyright (rev 0)
+++ trunk/packages/macs/trunk/debian/copyright 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,10 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: macs
+Source: https://github.com/taoliu/MACS/downloads
+
+Files: *
+Copyright: 2008 Zhang et al.
+License: This software is distributed under the terms of Artistic License.
+The complete text of the Artistic License can be found in
+'http://liulab.dfci.harvard.edu/MACS/COPYING'
+
Added: trunk/packages/macs/trunk/debian/docs
===================================================================
--- trunk/packages/macs/trunk/debian/docs (rev 0)
+++ trunk/packages/macs/trunk/debian/docs 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1 @@
+README
Added: trunk/packages/macs/trunk/debian/rules
===================================================================
--- trunk/packages/macs/trunk/debian/rules (rev 0)
+++ trunk/packages/macs/trunk/debian/rules 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,17 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
+
+override_dh_auto_clean:
+ dh_auto_clean
+ find -type f -name '*.c' -exec rm -f '{}' ';'
Property changes on: trunk/packages/macs/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/macs/trunk/debian/source/format
===================================================================
--- trunk/packages/macs/trunk/debian/source/format (rev 0)
+++ trunk/packages/macs/trunk/debian/source/format 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/macs/trunk/debian/watch
===================================================================
--- trunk/packages/macs/trunk/debian/watch (rev 0)
+++ trunk/packages/macs/trunk/debian/watch 2012-01-05 18:34:50 UTC (rev 9177)
@@ -0,0 +1,24 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+opts="uversionmangle=s/-/./" \
+https://github.com/taoliu/MACS/downloads /downloads/.*/MACS/MACS-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/macs-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+#ftp://ftp.example.com/pub/macs-(.*)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/macs/macs-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+# http://example.googlepages.com/foo.html macs-(.*)\.tar\.gz
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