[med-svn] r9199 - in trunk/packages/seaview/tags: . 1:4.3.2-1/debian

Charles Plessy plessy at alioth.debian.org
Sun Jan 8 11:43:49 UTC 2012


Author: plessy
Date: 2012-01-08 11:43:48 +0000 (Sun, 08 Jan 2012)
New Revision: 9199

Added:
   trunk/packages/seaview/tags/1:4.3.2-1/
   trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog
   trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright
   trunk/packages/seaview/tags/1:4.3.2-1/debian/install
   trunk/packages/seaview/tags/1:4.3.2-1/debian/links
   trunk/packages/seaview/tags/1:4.3.2-1/debian/rules
Removed:
   trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog
   trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright
   trunk/packages/seaview/tags/1:4.3.2-1/debian/install
   trunk/packages/seaview/tags/1:4.3.2-1/debian/rules
Log:
[svn-buildpackage] Tagging seaview 1:4.3.2-1

Deleted: trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog
===================================================================
--- trunk/packages/seaview/trunk/debian/changelog	2012-01-07 21:37:56 UTC (rev 9195)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog	2012-01-08 11:43:48 UTC (rev 9199)
@@ -1,422 +0,0 @@
-seaview (1:4.3.1-1) unstable; urgency=low
-
-  * New upstream release incorporating debian/patches/format-security.patch. 
-  * Build seaview on armel architecture (debian/control).
-  * Build-depend on libjpeg62-dev directly (debian/control), as libjpeg62-dev
-    no more Provides libjpeg-dev since 6b1-2.
-
- -- Charles Plessy <plessy at debian.org>  Sat, 03 Dec 2011 11:17:44 +0900
-
-seaview (1:4.3.0-2) unstable; urgency=low
-
-  * debian/patches/format-security.patch: Handle format strings properly
-    Closes: #648121
-  * debian/control: Fix Vcs fields
-
- -- Andreas Tille <tille at debian.org>  Wed, 09 Nov 2011 08:26:27 +0100
-
-seaview (1:4.3.0-1) unstable; urgency=low
-
-  * New upstream version with SVG output.
-  * Built on FLTK 1.3 (debian/control).
-  * Corrected location of the help file (debian/rules).
-
- -- Charles Plessy <plessy at debian.org>  Mon, 25 Jul 2011 18:57:42 +0900
-
-seaview (1:4.2.12-1) unstable; urgency=low
-
-  * New upstream versions.
-  * Using Debhelper compatibility level 8 (debian/control, debian/compat).
-  * Clean extra files through dh_clean (debian/clean, debian/rules).
-  * Simplified build system using CDBS to pass options through CFLAGS, removing
-    need for patching Makefile (debian/rules, debian/patches, debian/control).
-  * Incremented Standards-Version to reflect conformance with Policy 3.9.2
-    (debian/control, no changes needed).
-
- -- Charles Plessy <plessy at debian.org>  Fri, 10 Jun 2011 15:26:56 +0900
-
-seaview (1:4.2.10-1) unstable; urgency=low
-
-  * New upstream version
-  * debian/patches/10_makefile.patch:
-    - Linker flag -Wl,--as-needed to avoid useless linking and dependencies
-    - Activate suggested Options in Makefile
-
- -- Andreas Tille <tille at debian.org>  Thu, 25 Nov 2010 18:30:25 +0100
-
-seaview (1:4.2.9-1) unstable; urgency=low
-
-  * New upstream version (Closes: #601244).
-
- -- Charles Plessy <plessy at debian.org>  Wed, 27 Oct 2010 16:12:00 +0900
-
-seaview (1:4.2.6-1) unstable; urgency=low
-
-  * New upstream version.
-  * Incremented Standards-Version to reflect conformance with Policy 3.9.1
-    (debian/control, no changes needed).
-  * Refreshed debian/copyright according to latest DEP-5 discussions.
-  * Moved debian/upstream-metadata.yaml's PMID and DOI keys in the
-    Reference namespace.
-
- -- Charles Plessy <plessy at debian.org>  Mon, 23 Aug 2010 14:30:30 +0900
-
-seaview (1:4.2.5-1) unstable; urgency=low
-
-  * New upstrem version
-  * debian/watch: Force passive mode for ftp, because this works more
-    reliably
-  * Using dpkg source format version ‘3.0 (quilt)’ (debian/source/format)
-  * debian/seaview.doc-base.reference: There is no docbase section
-    Bibliography (even if this would be interesting) and thus it was
-    moved to Science/Biology
-
- -- Andreas Tille <tille at debian.org>  Fri, 25 Jun 2010 11:56:05 +0200
-
-seaview (1:4.2.4-1) unstable; urgency=low
-
-  * New upstream release.
-  * debian/control:
-    - Incremented Standards-Version to reflect conformance with Policy 3.8.4
-      (no changes needed).
-    - Support only i386 and amd64 until non-free autobuilders get more robust.
-  * Updated bibliographic reference in ‘debian/upstream-metadata.yaml’.
-
- -- Charles Plessy <plessy at debian.org>  Thu, 08 Apr 2010 13:07:41 +0900
-
-seaview (1:4.2.1-1) unstable; urgency=low
-
-  [ Charles Plessy ]
-  * New upstream release that can be compiled with GCC 4.4.2
-    Closes: #560438, Thanks to Luk Claes for the help.
-  * Updated bibliographic reference and Debian copyright file.
-
-  [ Andreas Tille ]
-  * s/Debian-Med/Debian Med/ in debian/control.
-
- -- Charles Plessy <plessy at debian.org>  Wed, 06 Jan 2010 21:59:51 +0900
-
-seaview (1:4.2-1) unstable; urgency=low
-
-  * New upstream release.
-  * debian/control:
-    - Build depend on unversionned libjpeg-dev package.
-    - Added XS-Autobuild: yes to benefit from the non-free autobuilders.
-    - checked package conformance with Policy 3.8.3 (no changes needed).
-  * Documented zlib.conf in debian/copyright.
-  * Added various informations in debian/upstream-metadata.yaml.
-
- -- Charles Plessy <plessy at debian.org>  Sun, 18 Oct 2009 17:10:08 +0900
-
-seaview (1:4.1-1) unstable; urgency=low
-
-  * New upstream version adding nucleotide ambiguity symbols in consensus
-    DNA sequences.
-  * debian/control: checked package conformance with Policy 3.8.2
-    and incremented Standards-Version accordingly (no changes needed).
-  * debian/seaview.1*: accepted upstream and therefore deleted.
-
- -- Charles Plessy <plessy at debian.org>  Mon, 13 Jul 2009 18:54:00 +0900
-
-seaview (1:4.0-1) unstable; urgency=low
-
-  * New upstream version
-    - Computes and draws parsimony, distance and PhyML phylogenetic trees.
-    - This new version unfortunately uses non-free files, and has therefore been
-      removed from Debian, but is distributed in the ‘non-free’ section of its
-      archive as a service its users.
-  * debian/control:
-    - Changed section to non-free/science.
-    - Build-Depends on libxft-dev and libxext-dev.
-    - Recommends phyml, muscle and clustalw.
-    - Dropped dependency on xterm.
-    - checked package conformance with Policy 3.8.1.
-    - Updated description and removed reference from it.
-    - Dropped build dependency on quilt. 
-  * debian/patches and debian/README.source removed:
-    - 20-no-PDF-in-help.patch: upstream wording became true for Debian as well.
-    - 21-location-of-seaview.help.patch: passing -DHELPFILENAME through
-      debian/rules instead.
-    - 40-seaview_align.sh-newline.patch, seaview_align-full_path.patch:
-      seaview_align.sh was removed upstream.
-  * debian/README.Debian deleted as well (obsolete).
-  * debian/rules:
-    - Makes `seaview' instead of `seaviewps' as (non-free) PDF support is not
-      default anymore.
-    - Indicate the location of the help file with:
-      -DHELPFILENAME=\\\"/usr/share/doc/seaview/seaview.html\\\"
-    - Uses `dh clean' and $(RM) macro in the clean target.
-    - Uses `dh binary-arch` in the binary-arch target (created debian/docs,
-      debian/seaview.examples, and debian/manpages).
-    - Removed protein.mase from examples (removed upstream).
-    - Removed patching facilities (no patches to apply anymore).
-  * Removed `seaview_align.sh' from debian/install, as it was removed upstream.
-  * debian/copyright:
-    - Incremented year and version.
-    - Link to the precise versions of the GNU GPL and LGPL.
-    - Added the necessary disclaimers because SeaView became non-free.
-  * Updated the manpage (debian/seaview.1*).
-  * Registered the new help file with doc-base (debian/seaview.doc-base.help).
-
- -- Charles Plessy <plessy at debian.org>  Wed, 27 May 2009 08:07:40 +0900
-
-seaview (1:3.2-1) unstable; urgency=low
-
-  * New upstream version:
-    - Version 3.2: Database import can be done using a keyword.
-    - Version 3.1: now use Fl_Native_File_Chooser.
-    - Version 3.0: sequences can be imported from embl, genbank, swissprot if
-      internet access.
-  * debian/copyright:
-    - Added the FL directory from Upstream sources.
-    - Updated to the latest version of the machine-readable format.
-  * debian/seaview.svg: vector icon made for SeaView and forwarded upstream.
-  * debian/seaview.1*: added year 2008 to copyright statements.
-  * Updated my email address.
-  * debian/control, debian/compat: using Debhelper 7.
-  * debian/control: added build-dependency on libpng12-dev and zlib1g-dev.
-  * Experimental handling of bibliographic references:
-    - debian/references contains a BibTeX-formatted reference.
-    - debian/seaview.doc-base.references registers it for Doc-base
-      in a "Bibliography" section to be proposed later.
-
- -- Charles Plessy <plessy at debian.org>  Sun, 14 Dec 2008 22:58:57 +0900
-
-seaview (1:2.4-1) unstable; urgency=low
-
-  * New upstream version:
-    - Version 2.3: corrected bug if adding/deleting/moving sequences when in
-      'view as proteins' mode.
-    - Version 2.4: PHYLIP format: user can customize the max length of names.
-  * debian/control:
-    - Suggests: muscle, clustalw (non-free). Seaview detects if they
-     are not present and grays the corresponding option.
-    - Allows the upload by Debian Maintainers.
-    - Checked that the package conforms to Policy 3.7.3.
-  * debian/copyright: made machine-readable
-  * MIME support:
-    - debian/seaview.sharedmimeinfo associates .aln suffix and
-      text/x-clustalw-alignment, debian/seaview.mime and
-      debian/seaview.desktop associate seaview with this MIME type.
-    - debian/rules executes dh_installmime.
-  * debian/seaview.1.xml: increased version number to 2.4 (no other changes
-    needed)
-  * debian/seaview.1: rebuilt with DocBook XSL Stylesheets v1.73.2.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 12 Jan 2008 15:30:07 +0900
-
-seaview (1:2.2-1) unstable; urgency=low
-
-  [ Nelson A. de Oliveira ]
-  * Updated watch file.
-
-  [ Charles Plessy ]
-  * New upstream release:
-    - introduced interface to external alignment programs.
-    - Work with several alignment windows; copy and paste sequence data
-      between them.
-  * Moved the Homepage: field out from the package's description.
-  * Removed the XS- prefix of the Vcs fields in debian/control
-  * Building the manpage offline: added seaview.1 to the package, and
-    removed xsltproc, docbook-xml and docbook-xsl from the build-dependencies.
-  * Patches to Seaview:
-    - Refreshed.
-    - Suppressed xterm_to_x-terminal-emulator.patch : strange communication
-      problems happen between seaview and some terminal emulators, such as
-      gnome-terminal or konsole.
-    - Hardcoded the path to seaview_align.sh.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 18 Nov 2007 23:35:29 +0900
-
-seaview (1:2.0-1) unstable; urgency=low
-
-  * New upstream release. Use "Props:View as proteins" to align
-    protein-coding DNA sequences.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Fri, 24 Aug 2007 00:02:33 +0900
-
-seaview (20070615-1) unstable; urgency=low
-
-  * New upstream release correcting problems with lowercase characters.
-  * Converted the SVN repository which hosts the Debian source package
-    to use the MergeWithUpstream option.
-  * Moved examples to debian/examples.
-  * Using 'quilt' as a patch management system instead of 'dpatch'.
-  * Managing all the changes to the sources with quilt.
-  * Adding $(misc-Depends) in debian/control.
-  * Debian Menu transition: moving entry to Applications/Science/Biology.
-  * Manpage: automatic date update; upgrading revision number.
-  * Adding bibliographic reference to debian/copyright and debian/control.
-  * Dropping 'config.h' patch from .diff.gz.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 21 Jul 2007 12:43:23 +0900
-
-seaview (20070417-1) unstable; urgency=low
-
-  * New upstream release adding processing of comments in FASTA format.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 29 Apr 2007 22:51:23 +0900
-
-seaview (20070215-1) unstable; urgency=low
-
-  * New upstream release, adding a new "Edit sequence" option in the Edit menu.
-  * Updated manpage and converted it to Unicode.
-  * Add Subversion repository URL to debian/control.
-  * Including /usr/share/dpatch/dpatch.make in debian/rules.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu,  5 Apr 2007 09:38:08 +0900
-
-seaview (20061005-1) unstable; urgency=low
-
-  * New upstream release. The xpm icon and its sources are now included in.
-  * New maintainer email: the previous one was not the intended mailing list.
-  * Removing options passed to x-terminal-emulator if they are not a MUST in
-    the policy chapter 11.8.3.
-  * Improved manpage.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 28 Oct 2006 17:27:02 +0900
-
-seaview (20060918-1) unstable; urgency=low
-
-  * New upstream release (Closes: #357585)
-  * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
-  * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
-  * Conforms to Standards version 3.7.2 and debhelper compatibility level 5.
-  * Collective maintenance: Debian-Med Packaging Team is the new Maintainer.
-  * Outputs PS instead of PDF as Debian can not support the PDFlib.
-  * Uses x-terminal-emulator instead of xterm.
-  * Support for freedesktop menus, and nice new icon.
-  * Updated manpage.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu, 28 Sep 2006 12:13:53 +0900
-
-seaview (20021127-4.1) unstable; urgency=medium
-
-  * Non-maintainer upload.
-  * Medium-urgency upload for RC bugfix.
-  * Rebuild for the C++ ABI transition.  Closes: #328175.
-
- -- Steve Langasek <vorlon at debian.org>  Thu, 22 Sep 2005 02:07:07 -0700
-
-seaview (20021127-4) unstable; urgency=low
-
-  * Cleaned up debian/rules file.
-  * Conforms to Standards version 3.6.1.
-	
- -- Brian R Furry <bfurry at nac.net>  Sun, 30 Nov 2003 00:04:02 +0000
-
-seaview (20021127-3) unstable; urgency=low
-
-  * Adopted by new maintainer; closes: 100261
-  * Conforms to Standards version 3.6.0.
-
- -- Brian R Furry <bfurry at nac.net>  Thu, 11 Sep 2003 21:12:40 -0400
-
-seaview (20021127-2.2) unstable; urgency=low
-
-  * NMU.
-  * Downgrade dependency on clustalw to a recommendation, since we don't
-    absolutely need it and it doesn't exist on mips(el).
-
- -- Aaron M. Ucko <ucko at debian.org>  Tue, 17 Jun 2003 13:22:55 -0400
-
-seaview (20021127-2.1) unstable; urgency=low
-
-  * NMU.
-  * Rebuild with Xft2-based FLTK (>= 1.1.3-2.1).
-
- -- Aaron M. Ucko <ucko at debian.org>  Wed,  7 May 2003 20:36:02 -0400
-
-seaview (20021127-2) unstable; urgency=low
-
-  * QA upload.
-  * Built with g++ 3.2 and libfltk1.1c102 (closes: #176147).
-
- -- Colin Watson <cjwatson at debian.org>  Sat, 11 Jan 2003 02:50:11 +0000
-
-seaview (20021127-1) unstable; urgency=low
-
-  * QA upload.
-  * New upstream release.
-  * Conforms to Standards version 3.5.8.
-
- -- Matej Vela <vela at debian.org>  Sun,  1 Dec 2002 22:14:33 +0100
-
-seaview (20021010-1) unstable; urgency=low
-
-  * QA upload.
-  * New upstream release.
-  * Provide a config.h for old_file_chooser.cxx.
-  * debian/menu: Use `section=Apps/Science hints=Biology' (see #162812).
-
- -- Matej Vela <vela at debian.org>  Sat, 19 Oct 2002 21:26:13 +0200
-
-seaview (20020409-1) unstable; urgency=low
-
-  * QA upload.
-  * New upstream version (there's no version number in the sources).
-    Closes: #128357.
-  * align.cxx:
-    - Handle temporary files securely (seaview 0.0 is not vulnerable).
-    - Use x-terminal-emulator rather than xterm or rxvt.
-  * seaview.1:
-    - List NEXUS among the supported formats.
-    - `-reducefonts' is no longer accepted.
-  * Switched to debhelper 4.
-  * Moved /usr/lib/seaview/seaview.help to /usr/share/seaview as
-    architecture-independent.
-  * Changed section from contrib/misc to contrib/science.
-  * Added menu support.
-  * debian/changelog: Remove obsolete Emacs local variables.
-  * Conforms to Standards version 3.5.7.
-
- -- Matej Vela <vela at debian.org>  Fri, 20 Sep 2002 18:25:47 +0200
-
-seaview (0.0-6.1) unstable; urgency=low
-
-  * NMU
-  * Update to build against XForms 0.89.  (closes: Bug#118138)
-
- -- Doug Porter <dsp at debian.org>  Mon, 12 Nov 2001 11:43:51 -0500
-
-seaview (0.0-6) unstable; urgency=low
-
-  * Maintainer set to Debian QA Group <packages at qa.debian.org>.
-
- -- Adrian Bunk <bunk at fs.tum.de>  Fri, 24 Aug 2001 23:58:22 +0200
-
-seaview (0.0-5) unstable; urgency=low
-
-  * Adopted by new maintainer; closes: #92802
-  * Moved all doc files to /usr/share/doc; closes: #91647
-  * Moved manpage to /usr/share/man; closes: #91064
-  * Updated to latest policy, and added Build-Depends.
-  * Removed some unnecessary files in debian dir.
-
- -- Dr. Guenter Bechly <gbechly at debian.org>  Sat,  7 Apr 2001 18:00:30 +0200
-
-seaview (0.0-4) unstable; urgency=low
-
-  * A few examples added
-  * New bug in seaview_align.sh, this time fixed seriously.
-
- -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Thu,  3 Jun 1999 10:07:55 +0200
-
-seaview (0.0-3) unstable; urgency=low
-
-  * Big bug in seaview_align.sh (not all parameters were passed).
-
- -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Wed, 26 May 1999 14:39:26 +0200
-
-seaview (0.0-2) unstable; urgency=low
-
-  * No longer depends on c-shell or xterm. Closes #34700
-  * Manual page. Closes #34615
-
- -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Tue, 25 May 1999 14:42:15 +0200
-
-seaview (0.0-1) unstable; urgency=low
-
-  * Initial Release.
-
- -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Mon,  1 Mar 1999 16:41:51 +0100

Copied: trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog (from rev 9198, trunk/packages/seaview/trunk/debian/changelog)
===================================================================
--- trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog	                        (rev 0)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/changelog	2012-01-08 11:43:48 UTC (rev 9199)
@@ -0,0 +1,429 @@
+seaview (1:4.3.2-1) unstable; urgency=low
+
+  * New upstream release.
+  * Moved help file to /usr/share/seaview and left a symbolic link.
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 08 Jan 2012 18:57:12 +0900
+
+seaview (1:4.3.1-1) unstable; urgency=low
+
+  * New upstream release incorporating debian/patches/format-security.patch. 
+  * Build seaview on armel architecture (debian/control).
+  * Build-depend on libjpeg62-dev directly (debian/control), as libjpeg62-dev
+    no more Provides libjpeg-dev since 6b1-2.
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 03 Dec 2011 11:17:44 +0900
+
+seaview (1:4.3.0-2) unstable; urgency=low
+
+  * debian/patches/format-security.patch: Handle format strings properly
+    Closes: #648121
+  * debian/control: Fix Vcs fields
+
+ -- Andreas Tille <tille at debian.org>  Wed, 09 Nov 2011 08:26:27 +0100
+
+seaview (1:4.3.0-1) unstable; urgency=low
+
+  * New upstream version with SVG output.
+  * Built on FLTK 1.3 (debian/control).
+  * Corrected location of the help file (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 25 Jul 2011 18:57:42 +0900
+
+seaview (1:4.2.12-1) unstable; urgency=low
+
+  * New upstream versions.
+  * Using Debhelper compatibility level 8 (debian/control, debian/compat).
+  * Clean extra files through dh_clean (debian/clean, debian/rules).
+  * Simplified build system using CDBS to pass options through CFLAGS, removing
+    need for patching Makefile (debian/rules, debian/patches, debian/control).
+  * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+    (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 10 Jun 2011 15:26:56 +0900
+
+seaview (1:4.2.10-1) unstable; urgency=low
+
+  * New upstream version
+  * debian/patches/10_makefile.patch:
+    - Linker flag -Wl,--as-needed to avoid useless linking and dependencies
+    - Activate suggested Options in Makefile
+
+ -- Andreas Tille <tille at debian.org>  Thu, 25 Nov 2010 18:30:25 +0100
+
+seaview (1:4.2.9-1) unstable; urgency=low
+
+  * New upstream version (Closes: #601244).
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 27 Oct 2010 16:12:00 +0900
+
+seaview (1:4.2.6-1) unstable; urgency=low
+
+  * New upstream version.
+  * Incremented Standards-Version to reflect conformance with Policy 3.9.1
+    (debian/control, no changes needed).
+  * Refreshed debian/copyright according to latest DEP-5 discussions.
+  * Moved debian/upstream-metadata.yaml's PMID and DOI keys in the
+    Reference namespace.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 23 Aug 2010 14:30:30 +0900
+
+seaview (1:4.2.5-1) unstable; urgency=low
+
+  * New upstrem version
+  * debian/watch: Force passive mode for ftp, because this works more
+    reliably
+  * Using dpkg source format version ‘3.0 (quilt)’ (debian/source/format)
+  * debian/seaview.doc-base.reference: There is no docbase section
+    Bibliography (even if this would be interesting) and thus it was
+    moved to Science/Biology
+
+ -- Andreas Tille <tille at debian.org>  Fri, 25 Jun 2010 11:56:05 +0200
+
+seaview (1:4.2.4-1) unstable; urgency=low
+
+  * New upstream release.
+  * debian/control:
+    - Incremented Standards-Version to reflect conformance with Policy 3.8.4
+      (no changes needed).
+    - Support only i386 and amd64 until non-free autobuilders get more robust.
+  * Updated bibliographic reference in ‘debian/upstream-metadata.yaml’.
+
+ -- Charles Plessy <plessy at debian.org>  Thu, 08 Apr 2010 13:07:41 +0900
+
+seaview (1:4.2.1-1) unstable; urgency=low
+
+  [ Charles Plessy ]
+  * New upstream release that can be compiled with GCC 4.4.2
+    Closes: #560438, Thanks to Luk Claes for the help.
+  * Updated bibliographic reference and Debian copyright file.
+
+  [ Andreas Tille ]
+  * s/Debian-Med/Debian Med/ in debian/control.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 06 Jan 2010 21:59:51 +0900
+
+seaview (1:4.2-1) unstable; urgency=low
+
+  * New upstream release.
+  * debian/control:
+    - Build depend on unversionned libjpeg-dev package.
+    - Added XS-Autobuild: yes to benefit from the non-free autobuilders.
+    - checked package conformance with Policy 3.8.3 (no changes needed).
+  * Documented zlib.conf in debian/copyright.
+  * Added various informations in debian/upstream-metadata.yaml.
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 18 Oct 2009 17:10:08 +0900
+
+seaview (1:4.1-1) unstable; urgency=low
+
+  * New upstream version adding nucleotide ambiguity symbols in consensus
+    DNA sequences.
+  * debian/control: checked package conformance with Policy 3.8.2
+    and incremented Standards-Version accordingly (no changes needed).
+  * debian/seaview.1*: accepted upstream and therefore deleted.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 13 Jul 2009 18:54:00 +0900
+
+seaview (1:4.0-1) unstable; urgency=low
+
+  * New upstream version
+    - Computes and draws parsimony, distance and PhyML phylogenetic trees.
+    - This new version unfortunately uses non-free files, and has therefore been
+      removed from Debian, but is distributed in the ‘non-free’ section of its
+      archive as a service its users.
+  * debian/control:
+    - Changed section to non-free/science.
+    - Build-Depends on libxft-dev and libxext-dev.
+    - Recommends phyml, muscle and clustalw.
+    - Dropped dependency on xterm.
+    - checked package conformance with Policy 3.8.1.
+    - Updated description and removed reference from it.
+    - Dropped build dependency on quilt. 
+  * debian/patches and debian/README.source removed:
+    - 20-no-PDF-in-help.patch: upstream wording became true for Debian as well.
+    - 21-location-of-seaview.help.patch: passing -DHELPFILENAME through
+      debian/rules instead.
+    - 40-seaview_align.sh-newline.patch, seaview_align-full_path.patch:
+      seaview_align.sh was removed upstream.
+  * debian/README.Debian deleted as well (obsolete).
+  * debian/rules:
+    - Makes `seaview' instead of `seaviewps' as (non-free) PDF support is not
+      default anymore.
+    - Indicate the location of the help file with:
+      -DHELPFILENAME=\\\"/usr/share/doc/seaview/seaview.html\\\"
+    - Uses `dh clean' and $(RM) macro in the clean target.
+    - Uses `dh binary-arch` in the binary-arch target (created debian/docs,
+      debian/seaview.examples, and debian/manpages).
+    - Removed protein.mase from examples (removed upstream).
+    - Removed patching facilities (no patches to apply anymore).
+  * Removed `seaview_align.sh' from debian/install, as it was removed upstream.
+  * debian/copyright:
+    - Incremented year and version.
+    - Link to the precise versions of the GNU GPL and LGPL.
+    - Added the necessary disclaimers because SeaView became non-free.
+  * Updated the manpage (debian/seaview.1*).
+  * Registered the new help file with doc-base (debian/seaview.doc-base.help).
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 27 May 2009 08:07:40 +0900
+
+seaview (1:3.2-1) unstable; urgency=low
+
+  * New upstream version:
+    - Version 3.2: Database import can be done using a keyword.
+    - Version 3.1: now use Fl_Native_File_Chooser.
+    - Version 3.0: sequences can be imported from embl, genbank, swissprot if
+      internet access.
+  * debian/copyright:
+    - Added the FL directory from Upstream sources.
+    - Updated to the latest version of the machine-readable format.
+  * debian/seaview.svg: vector icon made for SeaView and forwarded upstream.
+  * debian/seaview.1*: added year 2008 to copyright statements.
+  * Updated my email address.
+  * debian/control, debian/compat: using Debhelper 7.
+  * debian/control: added build-dependency on libpng12-dev and zlib1g-dev.
+  * Experimental handling of bibliographic references:
+    - debian/references contains a BibTeX-formatted reference.
+    - debian/seaview.doc-base.references registers it for Doc-base
+      in a "Bibliography" section to be proposed later.
+
+ -- Charles Plessy <plessy at debian.org>  Sun, 14 Dec 2008 22:58:57 +0900
+
+seaview (1:2.4-1) unstable; urgency=low
+
+  * New upstream version:
+    - Version 2.3: corrected bug if adding/deleting/moving sequences when in
+      'view as proteins' mode.
+    - Version 2.4: PHYLIP format: user can customize the max length of names.
+  * debian/control:
+    - Suggests: muscle, clustalw (non-free). Seaview detects if they
+     are not present and grays the corresponding option.
+    - Allows the upload by Debian Maintainers.
+    - Checked that the package conforms to Policy 3.7.3.
+  * debian/copyright: made machine-readable
+  * MIME support:
+    - debian/seaview.sharedmimeinfo associates .aln suffix and
+      text/x-clustalw-alignment, debian/seaview.mime and
+      debian/seaview.desktop associate seaview with this MIME type.
+    - debian/rules executes dh_installmime.
+  * debian/seaview.1.xml: increased version number to 2.4 (no other changes
+    needed)
+  * debian/seaview.1: rebuilt with DocBook XSL Stylesheets v1.73.2.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 12 Jan 2008 15:30:07 +0900
+
+seaview (1:2.2-1) unstable; urgency=low
+
+  [ Nelson A. de Oliveira ]
+  * Updated watch file.
+
+  [ Charles Plessy ]
+  * New upstream release:
+    - introduced interface to external alignment programs.
+    - Work with several alignment windows; copy and paste sequence data
+      between them.
+  * Moved the Homepage: field out from the package's description.
+  * Removed the XS- prefix of the Vcs fields in debian/control
+  * Building the manpage offline: added seaview.1 to the package, and
+    removed xsltproc, docbook-xml and docbook-xsl from the build-dependencies.
+  * Patches to Seaview:
+    - Refreshed.
+    - Suppressed xterm_to_x-terminal-emulator.patch : strange communication
+      problems happen between seaview and some terminal emulators, such as
+      gnome-terminal or konsole.
+    - Hardcoded the path to seaview_align.sh.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 18 Nov 2007 23:35:29 +0900
+
+seaview (1:2.0-1) unstable; urgency=low
+
+  * New upstream release. Use "Props:View as proteins" to align
+    protein-coding DNA sequences.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Fri, 24 Aug 2007 00:02:33 +0900
+
+seaview (20070615-1) unstable; urgency=low
+
+  * New upstream release correcting problems with lowercase characters.
+  * Converted the SVN repository which hosts the Debian source package
+    to use the MergeWithUpstream option.
+  * Moved examples to debian/examples.
+  * Using 'quilt' as a patch management system instead of 'dpatch'.
+  * Managing all the changes to the sources with quilt.
+  * Adding $(misc-Depends) in debian/control.
+  * Debian Menu transition: moving entry to Applications/Science/Biology.
+  * Manpage: automatic date update; upgrading revision number.
+  * Adding bibliographic reference to debian/copyright and debian/control.
+  * Dropping 'config.h' patch from .diff.gz.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 21 Jul 2007 12:43:23 +0900
+
+seaview (20070417-1) unstable; urgency=low
+
+  * New upstream release adding processing of comments in FASTA format.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 29 Apr 2007 22:51:23 +0900
+
+seaview (20070215-1) unstable; urgency=low
+
+  * New upstream release, adding a new "Edit sequence" option in the Edit menu.
+  * Updated manpage and converted it to Unicode.
+  * Add Subversion repository URL to debian/control.
+  * Including /usr/share/dpatch/dpatch.make in debian/rules.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu,  5 Apr 2007 09:38:08 +0900
+
+seaview (20061005-1) unstable; urgency=low
+
+  * New upstream release. The xpm icon and its sources are now included in.
+  * New maintainer email: the previous one was not the intended mailing list.
+  * Removing options passed to x-terminal-emulator if they are not a MUST in
+    the policy chapter 11.8.3.
+  * Improved manpage.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sat, 28 Oct 2006 17:27:02 +0900
+
+seaview (20060918-1) unstable; urgency=low
+
+  * New upstream release (Closes: #357585)
+  * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587)
+  * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581)
+  * Conforms to Standards version 3.7.2 and debhelper compatibility level 5.
+  * Collective maintenance: Debian-Med Packaging Team is the new Maintainer.
+  * Outputs PS instead of PDF as Debian can not support the PDFlib.
+  * Uses x-terminal-emulator instead of xterm.
+  * Support for freedesktop menus, and nice new icon.
+  * Updated manpage.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu, 28 Sep 2006 12:13:53 +0900
+
+seaview (20021127-4.1) unstable; urgency=medium
+
+  * Non-maintainer upload.
+  * Medium-urgency upload for RC bugfix.
+  * Rebuild for the C++ ABI transition.  Closes: #328175.
+
+ -- Steve Langasek <vorlon at debian.org>  Thu, 22 Sep 2005 02:07:07 -0700
+
+seaview (20021127-4) unstable; urgency=low
+
+  * Cleaned up debian/rules file.
+  * Conforms to Standards version 3.6.1.
+	
+ -- Brian R Furry <bfurry at nac.net>  Sun, 30 Nov 2003 00:04:02 +0000
+
+seaview (20021127-3) unstable; urgency=low
+
+  * Adopted by new maintainer; closes: 100261
+  * Conforms to Standards version 3.6.0.
+
+ -- Brian R Furry <bfurry at nac.net>  Thu, 11 Sep 2003 21:12:40 -0400
+
+seaview (20021127-2.2) unstable; urgency=low
+
+  * NMU.
+  * Downgrade dependency on clustalw to a recommendation, since we don't
+    absolutely need it and it doesn't exist on mips(el).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Tue, 17 Jun 2003 13:22:55 -0400
+
+seaview (20021127-2.1) unstable; urgency=low
+
+  * NMU.
+  * Rebuild with Xft2-based FLTK (>= 1.1.3-2.1).
+
+ -- Aaron M. Ucko <ucko at debian.org>  Wed,  7 May 2003 20:36:02 -0400
+
+seaview (20021127-2) unstable; urgency=low
+
+  * QA upload.
+  * Built with g++ 3.2 and libfltk1.1c102 (closes: #176147).
+
+ -- Colin Watson <cjwatson at debian.org>  Sat, 11 Jan 2003 02:50:11 +0000
+
+seaview (20021127-1) unstable; urgency=low
+
+  * QA upload.
+  * New upstream release.
+  * Conforms to Standards version 3.5.8.
+
+ -- Matej Vela <vela at debian.org>  Sun,  1 Dec 2002 22:14:33 +0100
+
+seaview (20021010-1) unstable; urgency=low
+
+  * QA upload.
+  * New upstream release.
+  * Provide a config.h for old_file_chooser.cxx.
+  * debian/menu: Use `section=Apps/Science hints=Biology' (see #162812).
+
+ -- Matej Vela <vela at debian.org>  Sat, 19 Oct 2002 21:26:13 +0200
+
+seaview (20020409-1) unstable; urgency=low
+
+  * QA upload.
+  * New upstream version (there's no version number in the sources).
+    Closes: #128357.
+  * align.cxx:
+    - Handle temporary files securely (seaview 0.0 is not vulnerable).
+    - Use x-terminal-emulator rather than xterm or rxvt.
+  * seaview.1:
+    - List NEXUS among the supported formats.
+    - `-reducefonts' is no longer accepted.
+  * Switched to debhelper 4.
+  * Moved /usr/lib/seaview/seaview.help to /usr/share/seaview as
+    architecture-independent.
+  * Changed section from contrib/misc to contrib/science.
+  * Added menu support.
+  * debian/changelog: Remove obsolete Emacs local variables.
+  * Conforms to Standards version 3.5.7.
+
+ -- Matej Vela <vela at debian.org>  Fri, 20 Sep 2002 18:25:47 +0200
+
+seaview (0.0-6.1) unstable; urgency=low
+
+  * NMU
+  * Update to build against XForms 0.89.  (closes: Bug#118138)
+
+ -- Doug Porter <dsp at debian.org>  Mon, 12 Nov 2001 11:43:51 -0500
+
+seaview (0.0-6) unstable; urgency=low
+
+  * Maintainer set to Debian QA Group <packages at qa.debian.org>.
+
+ -- Adrian Bunk <bunk at fs.tum.de>  Fri, 24 Aug 2001 23:58:22 +0200
+
+seaview (0.0-5) unstable; urgency=low
+
+  * Adopted by new maintainer; closes: #92802
+  * Moved all doc files to /usr/share/doc; closes: #91647
+  * Moved manpage to /usr/share/man; closes: #91064
+  * Updated to latest policy, and added Build-Depends.
+  * Removed some unnecessary files in debian dir.
+
+ -- Dr. Guenter Bechly <gbechly at debian.org>  Sat,  7 Apr 2001 18:00:30 +0200
+
+seaview (0.0-4) unstable; urgency=low
+
+  * A few examples added
+  * New bug in seaview_align.sh, this time fixed seriously.
+
+ -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Thu,  3 Jun 1999 10:07:55 +0200
+
+seaview (0.0-3) unstable; urgency=low
+
+  * Big bug in seaview_align.sh (not all parameters were passed).
+
+ -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Wed, 26 May 1999 14:39:26 +0200
+
+seaview (0.0-2) unstable; urgency=low
+
+  * No longer depends on c-shell or xterm. Closes #34700
+  * Manual page. Closes #34615
+
+ -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Tue, 25 May 1999 14:42:15 +0200
+
+seaview (0.0-1) unstable; urgency=low
+
+  * Initial Release.
+
+ -- Stephane Bortzmeyer <bortzmeyer at debian.org>  Mon,  1 Mar 1999 16:41:51 +0100

Deleted: trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright
===================================================================
--- trunk/packages/seaview/trunk/debian/copyright	2012-01-07 21:37:56 UTC (rev 9195)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright	2012-01-08 11:43:48 UTC (rev 9199)
@@ -1,144 +0,0 @@
-Format: http://dep.debian.net/deps/dep5/
-Source: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.0.tar.gz
-Disclamer: This package is not part of the Debian operating system.
- The seaview source and binary Debian packages are part of the “non-free” area
- in our archive. The packages in this area are not part of the Debian system,
- although they have been configured for use with Debian. We nevertheless support
- the use of the seaview source and binary Debian packages and provide
- infrastructure for non-free packages (such as our bug tracking system and
- mailing lists). The licences of SeaView do not forbid Debian from using
- autobuilders to create binary packages.
-
-Files: *
-Copyright: 1996-2010 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
-License: GPL-3+ with PHYLIP exception
- This program, except where indicated, is free software; you can redistribute it and/or
- modify it under the terms of the GNU General Public
- License as published by the Free Software Foundation; 
- either version 3 of the License, or (at your option) any later version..
- . 
- Two files (dnapars.c and protpars.c) have a distinct license
- which authorizes distribution that does not generate revenue.
- .
- Three files (bionj.c, phyml_util.c and phyml_util.h) are also covered by the 
- GNU General Public License but are copyright Stephane Guindon.
- .
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- General Public License for more details.
- .
- Additional permission under GNU GPL version 3 section 7
- .
- If you modify this Program, or any covered work, by linking or combining it with PHYLIP 
- (or a modified version of that library), containing parts covered by the terms of 
- the University of Washington license, the licensor of this Program grants you additional 
- permission to convey the resulting work. 
- .
- A copy of the GNU General Public License is available
- from http://www.gnu.org/licenses/gpl.txt .
-Comment: 
- On Debian systems, the complete text of the GNU General Public License version
- 3 can be found in ‘/usr/share/common-licenses/GPL-3’.
-
-Files: csrc/bionj.c csrc/phyml_util.h
-Copyright: © Stephane Guindon. Oct 2003 onward
-License: GPL-2+ with PHYLIP exception
- This program is free software; you can redistribute it and/or modify it under the terms of the 
- GNU General Public License as published by the Free Software Foundation; either version 2 of 
- the License, or (at your option) any later version.
- .
- This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without 
- even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 
- General Public License for more details.
- .
- You should have received a copy of the GNU General Public License along with this program; if not, 
- see <http://www.gnu.org/licenses>.
- .
- Linking PHYML statically or dynamically with other modules is making a combined work based on PHYML. 
- Thus, the terms and conditions of the GNU General Public License cover the whole combination.
- .
- In addition, as a special exception, the copyright holders of PHYML give you permission to combine 
- PHYML with free software programs or libraries that are released under the GNU LGPL and with code 
- included in the standard release of PHYLIP under the University of Washington license (or modified 
- versions of such code, with unchanged license). You may copy and distribute such a system following 
- the terms of the GNU GPL for PHYML and the licenses of the other code concerned.
- .
- Note that people who make modified versions of PHYML are not obligated to grant this special exception 
- for their modified versions; it is their choice whether to do so. The GNU General Public License gives 
- permission to release a modified version without this exception; this exception also makes it possible 
- to release a modified version which carries forward this exception.
-
-Files: csrc/dnapars.c csrc/protpars.c
-Copyright: © 1980-2008. University of Washington
-License: PHYLIP
- (c) Copyright 1980-2008. University of Washington. All rights reserved. Permission is 
- granted to reproduce, perform, and modify these programs and documentation files. 
- Permission is granted to distribute or provide access to these programs provided 
- that this copyright notice is not removed, the programs are not integrated with or 
- called by any product or service that generates revenue, and that your distribution 
- of these documentation files and programs are free. Any modified versions of these 
- materials that are distributed or accessible shall indicate that they are based on 
- these programs. Institutions of higher education are granted permission to 
- distribute this material to their students and staff for a fee to recover 
- distribution costs. Permission requests for any other distribution of these 
- program should be directed to  license (at) u.washington.edu . 
-
-Files: FL/*
-Copyright: © 2004 Greg Ercolano
-           © 2005 Nathan Vander Wilt 
-License: LGPL-2+
- This library is free software; you can redistribute it and/or
- modify it under the terms of the GNU Library General Public
- License as published by the Free Software Foundation; either
- version 2 of the License, or (at your option) any later version.
- .
- This library is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- Library General Public License for more details.
- .
- You should have received a copy of the GNU Library General Public
- License along with this library; if not, write to the Free Software
- Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston MA  02110-1301 USA
-Comment: 
- On Debian systems, the complete text of the GNU Lesser General Public License
- version 2 can be found in ‘/usr/share/common-licenses/LGPL-2’.
-
-Files: zconf.h
-Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler
-License: zlib
-  This software is provided 'as-is', without any express or implied
-  warranty.  In no event will the authors be held liable for any damages
-  arising from the use of this software.
- . 
-  Permission is granted to anyone to use this software for any purpose,
-  including commercial applications, and to alter it and redistribute it
-  freely, subject to the following restrictions:
- . 
-  1. The origin of this software must not be misrepresented; you must not
-     claim that you wrote the original software. If you use this software
-     in a product, an acknowledgment in the product documentation would be
-     appreciated but is not required.
-  2. Altered source versions must be plainly marked as such, and must not be
-     misrepresented as being the original software.
-  3. This notice may not be removed or altered from any source distribution.
- . 
-  Jean-loup Gailly        Mark Adler
-  jloup at gzip.org          madler at alumni.caltech.edu
-
-Files: debian/*
-Copyright: © 1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
-           © 2001 Dr. Guenter Bechly <gbechly at debian.org>
-           © 2001 Adrian Bunk <bunk at fs.tum.de>
-           © 2001 Doug Porter <dsp at debian.org>
-           © 2002 Matej Vela <vela at debian.org>
-           © 2003 Colin Watson <cjwatson at debian.org>
-           © 2003 Aaron M. Ucko <ucko at debian.org>
-           © 2003 Brian R Furry <bfurry at nac.net>
-           © 2005 Steve Langasek <vorlon at debian.org>
-           © 2007 Nelson A. de Oliveira <naoliv at debian.org>
-           © 2006–2010 Charles Plessy <plessy at debian.org>
-License: unknown
- Please treat the contributions of Charles Plessy as if they were in the public domain.
-

Copied: trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright (from rev 9196, trunk/packages/seaview/trunk/debian/copyright)
===================================================================
--- trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright	                        (rev 0)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/copyright	2012-01-08 11:43:48 UTC (rev 9199)
@@ -0,0 +1,144 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.2.tar.gz
+Disclamer: This package is not part of the Debian operating system.
+ The seaview source and binary Debian packages are part of the “non-free” area
+ in our archive. The packages in this area are not part of the Debian system,
+ although they have been configured for use with Debian. We nevertheless support
+ the use of the seaview source and binary Debian packages and provide
+ infrastructure for non-free packages (such as our bug tracking system and
+ mailing lists). The licences of SeaView do not forbid Debian from using
+ autobuilders to create binary packages.
+
+Files: *
+Copyright: 1996-2010 Manolo Gouy <mgouy at biomserv.univ-lyon1.fr>
+License: GPL-3+ with PHYLIP exception
+ This program, except where indicated, is free software; you can redistribute it and/or
+ modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; 
+ either version 3 of the License, or (at your option) any later version..
+ . 
+ Two files (dnapars.c and protpars.c) have a distinct license
+ which authorizes distribution that does not generate revenue.
+ .
+ Three files (bionj.c, phyml_util.c and phyml_util.h) are also covered by the 
+ GNU General Public License but are copyright Stephane Guindon.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ General Public License for more details.
+ .
+ Additional permission under GNU GPL version 3 section 7
+ .
+ If you modify this Program, or any covered work, by linking or combining it with PHYLIP 
+ (or a modified version of that library), containing parts covered by the terms of 
+ the University of Washington license, the licensor of this Program grants you additional 
+ permission to convey the resulting work. 
+ .
+ A copy of the GNU General Public License is available
+ from http://www.gnu.org/licenses/gpl.txt .
+Comment: 
+ On Debian systems, the complete text of the GNU General Public License version
+ 3 can be found in ‘/usr/share/common-licenses/GPL-3’.
+
+Files: csrc/bionj.c csrc/phyml_util.h
+Copyright: © Stephane Guindon. Oct 2003 onward
+License: GPL-2+ with PHYLIP exception
+ This program is free software; you can redistribute it and/or modify it under the terms of the 
+ GNU General Public License as published by the Free Software Foundation; either version 2 of 
+ the License, or (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without 
+ even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU 
+ General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along with this program; if not, 
+ see <http://www.gnu.org/licenses>.
+ .
+ Linking PHYML statically or dynamically with other modules is making a combined work based on PHYML. 
+ Thus, the terms and conditions of the GNU General Public License cover the whole combination.
+ .
+ In addition, as a special exception, the copyright holders of PHYML give you permission to combine 
+ PHYML with free software programs or libraries that are released under the GNU LGPL and with code 
+ included in the standard release of PHYLIP under the University of Washington license (or modified 
+ versions of such code, with unchanged license). You may copy and distribute such a system following 
+ the terms of the GNU GPL for PHYML and the licenses of the other code concerned.
+ .
+ Note that people who make modified versions of PHYML are not obligated to grant this special exception 
+ for their modified versions; it is their choice whether to do so. The GNU General Public License gives 
+ permission to release a modified version without this exception; this exception also makes it possible 
+ to release a modified version which carries forward this exception.
+
+Files: csrc/dnapars.c csrc/protpars.c
+Copyright: © 1980-2008. University of Washington
+License: PHYLIP
+ (c) Copyright 1980-2008. University of Washington. All rights reserved. Permission is 
+ granted to reproduce, perform, and modify these programs and documentation files. 
+ Permission is granted to distribute or provide access to these programs provided 
+ that this copyright notice is not removed, the programs are not integrated with or 
+ called by any product or service that generates revenue, and that your distribution 
+ of these documentation files and programs are free. Any modified versions of these 
+ materials that are distributed or accessible shall indicate that they are based on 
+ these programs. Institutions of higher education are granted permission to 
+ distribute this material to their students and staff for a fee to recover 
+ distribution costs. Permission requests for any other distribution of these 
+ program should be directed to  license (at) u.washington.edu . 
+
+Files: FL/*
+Copyright: © 2004 Greg Ercolano
+           © 2005 Nathan Vander Wilt 
+License: LGPL-2+
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Library General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+ Library General Public License for more details.
+ .
+ You should have received a copy of the GNU Library General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston MA  02110-1301 USA
+Comment: 
+ On Debian systems, the complete text of the GNU Lesser General Public License
+ version 2 can be found in ‘/usr/share/common-licenses/LGPL-2’.
+
+Files: zconf.h
+Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler
+License: zlib
+  This software is provided 'as-is', without any express or implied
+  warranty.  In no event will the authors be held liable for any damages
+  arising from the use of this software.
+ . 
+  Permission is granted to anyone to use this software for any purpose,
+  including commercial applications, and to alter it and redistribute it
+  freely, subject to the following restrictions:
+ . 
+  1. The origin of this software must not be misrepresented; you must not
+     claim that you wrote the original software. If you use this software
+     in a product, an acknowledgment in the product documentation would be
+     appreciated but is not required.
+  2. Altered source versions must be plainly marked as such, and must not be
+     misrepresented as being the original software.
+  3. This notice may not be removed or altered from any source distribution.
+ . 
+  Jean-loup Gailly        Mark Adler
+  jloup at gzip.org          madler at alumni.caltech.edu
+
+Files: debian/*
+Copyright: © 1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
+           © 2001 Dr. Guenter Bechly <gbechly at debian.org>
+           © 2001 Adrian Bunk <bunk at fs.tum.de>
+           © 2001 Doug Porter <dsp at debian.org>
+           © 2002 Matej Vela <vela at debian.org>
+           © 2003 Colin Watson <cjwatson at debian.org>
+           © 2003 Aaron M. Ucko <ucko at debian.org>
+           © 2003 Brian R Furry <bfurry at nac.net>
+           © 2005 Steve Langasek <vorlon at debian.org>
+           © 2007 Nelson A. de Oliveira <naoliv at debian.org>
+           © 2006–2010 Charles Plessy <plessy at debian.org>
+License: unknown
+ Please treat the contributions of Charles Plessy as if they were in the public domain.
+

Deleted: trunk/packages/seaview/tags/1:4.3.2-1/debian/install
===================================================================
--- trunk/packages/seaview/trunk/debian/install	2012-01-07 21:37:56 UTC (rev 9195)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/install	2012-01-08 11:43:48 UTC (rev 9199)
@@ -1,4 +0,0 @@
-seaview			usr/bin
-seaview.xpm		usr/share/pixmaps
-debian/seaview.desktop	usr/share/applications
-debian/seaview.svg	usr/share/icons/hicolor/scalable/apps

Copied: trunk/packages/seaview/tags/1:4.3.2-1/debian/install (from rev 9197, trunk/packages/seaview/trunk/debian/install)
===================================================================
--- trunk/packages/seaview/tags/1:4.3.2-1/debian/install	                        (rev 0)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/install	2012-01-08 11:43:48 UTC (rev 9199)
@@ -0,0 +1,5 @@
+seaview			usr/bin
+seaview.xpm		usr/share/pixmaps
+seaview.html		usr/share/seaview
+debian/seaview.desktop	usr/share/applications
+debian/seaview.svg	usr/share/icons/hicolor/scalable/apps

Copied: trunk/packages/seaview/tags/1:4.3.2-1/debian/links (from rev 9197, trunk/packages/seaview/trunk/debian/links)
===================================================================
--- trunk/packages/seaview/tags/1:4.3.2-1/debian/links	                        (rev 0)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/links	2012-01-08 11:43:48 UTC (rev 9199)
@@ -0,0 +1 @@
+usr/share/seaview/seaview.html	usr/share/doc/seaview/seaview.html

Deleted: trunk/packages/seaview/tags/1:4.3.2-1/debian/rules
===================================================================
--- trunk/packages/seaview/trunk/debian/rules	2012-01-07 21:37:56 UTC (rev 9195)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/rules	2012-01-08 11:43:48 UTC (rev 9199)
@@ -1,13 +0,0 @@
-#!/usr/bin/make -f
-
-include /usr/share/cdbs/1/class/makefile.mk
-include /usr/share/cdbs/1/rules/debhelper.mk
-
-# Same as upstream Makefile
-CFLAGS  += -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
-
-# Link as needed
-CFLAGS  += -Wl,--as-needed
-
-# Debian-specific names and paths
-CFLAGS  += -DDEFAULT_HELPFILE=\\\"/usr/share/doc/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"

Copied: trunk/packages/seaview/tags/1:4.3.2-1/debian/rules (from rev 9197, trunk/packages/seaview/trunk/debian/rules)
===================================================================
--- trunk/packages/seaview/tags/1:4.3.2-1/debian/rules	                        (rev 0)
+++ trunk/packages/seaview/tags/1:4.3.2-1/debian/rules	2012-01-08 11:43:48 UTC (rev 9199)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+
+include /usr/share/cdbs/1/class/makefile.mk
+include /usr/share/cdbs/1/rules/debhelper.mk
+
+# Same as upstream Makefile
+CFLAGS  += -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF
+
+# Link as needed
+CFLAGS  += -Wl,--as-needed
+
+# Debian-specific names and paths
+CFLAGS  += -DDEFAULT_HELPFILE=\\\"/usr/share/seaview/seaview.html\\\" -DPHYMLNAME=\\\"phyml\\\"




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