[med-svn] [SCM] sra-sdk branch, master, updated. debian/2.0.1-1-32-g8e1085c

Charles Plessy plessy at debian.org
Tue Jan 10 00:38:47 UTC 2012 

The following commit has been merged in the master branch:
commit fb427920067339c79277cbc8bcd81d80781ba5c5
Author: Charles Plessy <plessy at debian.org>
Date:   Tue Jan 10 08:38:37 2012 +0900

    Updated debian/sra-toolkit-libs0.symbols.

diff --git a/debian/sra-toolkit-libs0.symbols b/debian/sra-toolkit-libs0.symbols
index 08a4959..c8a2e13 100644
--- a/debian/sra-toolkit-libs0.symbols
+++ b/debian/sra-toolkit-libs0.symbols
@@ -1,3 +1,112 @@
+libalign-access.so.1 sra-toolkit-libs0 #MINVER#
+ AlignAccessAlignmentEnumeratorAddRef at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetBAMAlignment at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetCIGAR at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsFirstInPair at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsPaired at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsSecondInPair at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetMapQuality at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRecordID at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRefSeqID at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRefSeqPos at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSeqAccessionID at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSeqID at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSequence at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetStrandDirection at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorNext at Base 2.1.7a
+ AlignAccessAlignmentEnumeratorRelease at Base 2.1.7a
+ AlignAccessDBAddRef at Base 2.1.7a
+ AlignAccessDBEnumerateAlignments at Base 2.1.7a
+ AlignAccessDBEnumerateRefSequences at Base 2.1.7a
+ AlignAccessDBExportBAMFile at Base 2.1.7a
+ AlignAccessDBRelease at Base 2.1.7a
+ AlignAccessDBWindowedAlignments at Base 2.1.7a
+ AlignAccessMgrAddRef at Base 2.1.7a
+ AlignAccessMgrMake at Base 2.1.7a
+ AlignAccessMgrMakeBAMDB at Base 2.1.7a
+ AlignAccessMgrMakeIndexBAMDB at Base 2.1.7a
+ AlignAccessMgrRelease at Base 2.1.7a
+ AlignAccessRefSeqEnumeratorAddRef at Base 2.1.7a
+ AlignAccessRefSeqEnumeratorGetID at Base 2.1.7a
+ AlignAccessRefSeqEnumeratorGetLength at Base 2.1.7a
+ AlignAccessRefSeqEnumeratorNext at Base 2.1.7a
+ AlignAccessRefSeqEnumeratorRelease at Base 2.1.7a
+ BAMAlignmentAddRef at Base 2.1.7a
+ BAMAlignmentGetAlignmentDetail at Base 2.1.7a
+ BAMAlignmentGetCSKey at Base 2.1.7a
+ BAMAlignmentGetCSSequence at Base 2.1.7a
+ BAMAlignmentGetCigar at Base 2.1.7a
+ BAMAlignmentGetCigarCount at Base 2.1.7a
+ BAMAlignmentGetFlags at Base 2.1.7a
+ BAMAlignmentGetInsertSize at Base 2.1.7a
+ BAMAlignmentGetMapQuality at Base 2.1.7a
+ BAMAlignmentGetMatePosition at Base 2.1.7a
+ BAMAlignmentGetMateRefSeqId at Base 2.1.7a
+ BAMAlignmentGetPosition2 at Base 2.1.7a
+ BAMAlignmentGetPosition at Base 2.1.7a
+ BAMAlignmentGetQuality2 at Base 2.1.7a
+ BAMAlignmentGetQuality at Base 2.1.7a
+ BAMAlignmentGetRawCigar at Base 2.1.7a
+ BAMAlignmentGetReadGroupName at Base 2.1.7a
+ BAMAlignmentGetReadLength at Base 2.1.7a
+ BAMAlignmentGetReadName2 at Base 2.1.7a
+ BAMAlignmentGetReadName at Base 2.1.7a
+ BAMAlignmentGetRefSeqId at Base 2.1.7a
+ BAMAlignmentGetSequence2 at Base 2.1.7a
+ BAMAlignmentGetSequence at Base 2.1.7a
+ BAMAlignmentHasColorSpace at Base 2.1.7a
+ BAMAlignmentIsMapped at Base 2.1.7a
+ BAMAlignmentOptDataForEach at Base 2.1.7a
+ BAMAlignmentRelease at Base 2.1.7a
+ BAMFileAddRef at Base 2.1.7a
+ BAMFileGetHeaderText at Base 2.1.7a
+ BAMFileGetPosition at Base 2.1.7a
+ BAMFileGetProportionalPosition at Base 2.1.7a
+ BAMFileGetReadGroup at Base 2.1.7a
+ BAMFileGetReadGroupByName at Base 2.1.7a
+ BAMFileGetReadGroupCount at Base 2.1.7a
+ BAMFileGetRefSeq at Base 2.1.7a
+ BAMFileGetRefSeqById at Base 2.1.7a
+ BAMFileGetRefSeqCount at Base 2.1.7a
+ BAMFileIndexHasRefSeqId at Base 2.1.7a
+ BAMFileIsIndexed at Base 2.1.7a
+ BAMFileMake at Base 2.1.7a
+ BAMFileMakeWithDir at Base 2.1.7a
+ BAMFileMakeWithKFile at Base 2.1.7a
+ BAMFileMakeWithKPath at Base 2.1.7a
+ BAMFileOpenIndex at Base 2.1.7a
+ BAMFileOpenIndexWithKPath at Base 2.1.7a
+ BAMFileRead at Base 2.1.7a
+ BAMFileRelease at Base 2.1.7a
+ BAMFileRewind at Base 2.1.7a
+ BAMFileSeek at Base 2.1.7a
+ BAMFileSetPosition at Base 2.1.7a
+ BAMFileVMakeWithDir at Base 2.1.7a
+ BAMValidate at Base 2.1.7a
+libalign-reader.so.1 sra-toolkit-libs0 #MINVER#
+ RefSeqMgr_Exists at Base 2.1.7a
+ RefSeqMgr_ForEachVolume at Base 2.1.7a
+ RefSeqMgr_GetSeq at Base 2.1.7a
+ RefSeqMgr_Make at Base 2.1.7a
+ RefSeqMgr_Read at Base 2.1.7a
+ RefSeqMgr_Release at Base 2.1.7a
+ RefSeq_Circular at Base 2.1.7a
+ RefSeq_MD5 at Base 2.1.7a
+ RefSeq_Read at Base 2.1.7a
+ RefSeq_Release at Base 2.1.7a
+ RefSeq_SeqLength at Base 2.1.7a
+ TableReaderRefSeq_Circular at Base 2.1.7a
+ TableReaderRefSeq_MD5 at Base 2.1.7a
+ TableReaderRefSeq_MakePath at Base 2.1.7a
+ TableReaderRefSeq_MakeTable at Base 2.1.7a
+ TableReaderRefSeq_Read at Base 2.1.7a
+ TableReaderRefSeq_SeqId at Base 2.1.7a
+ TableReaderRefSeq_SeqLength at Base 2.1.7a
+ TableReaderRefSeq_Whack at Base 2.1.7a
+ TableReader_IdRange at Base 2.1.7a
+ TableReader_Make at Base 2.1.7a
+ TableReader_ReadRow at Base 2.1.7a
+ TableReader_Whack at Base 2.1.7a
 libkdb.so.1 sra-toolkit-libs0 #MINVER#
  DirectoryCheckMD5 at Base 2.0.1
  KBTreeAddRef at Base 2.0.1
@@ -9,9 +118,9 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
  KBTreeMakeUpdate at Base 2.0.1
  KBTreeRelease at Base 2.0.1
  KBTreeSize at Base 2.0.1
- KBTreeValueAccessRead at Base 2.0.1
- KBTreeValueAccessUpdate at Base 2.0.1
- KBTreeValueWhack at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessRead at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessUpdate at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueWhack at Base 2.0.1
  KColBlockLocAllocSize at Base 2.0.1
  KColBlockLocEntryCount at Base 2.0.1
  KColIdxBlockInit at Base 2.0.1
@@ -94,12 +203,15 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
  KDBWritable at Base 2.0.1
  KDatabaseAddRef at Base 2.0.1
  KDatabaseAttach at Base 2.0.1
+ KDatabaseConsistencyCheck at Base 2.1.7a
  KDatabaseExists at Base 2.0.1
  KDatabaseListDB at Base 2.0.1
  KDatabaseListIdx at Base 2.0.1
  KDatabaseListTbl at Base 2.0.1
  KDatabaseLocked at Base 2.0.1
+ KDatabaseModDate at Base 2.1.7a
  KDatabaseOpenDBRead at Base 2.0.1
+ KDatabaseOpenDirectoryRead at Base 2.1.7a
  KDatabaseOpenIndexRead at Base 2.0.1
  KDatabaseOpenManagerRead at Base 2.0.1
  KDatabaseOpenMetadataRead at Base 2.0.1
@@ -214,6 +326,8 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
  KU64IndexWhack_v3 at Base 2.0.1
 libkfg.so.1 sra-toolkit-libs0 #MINVER#
  KConfigAddRef at Base 2.0.1
+ KConfigGetLoadPath at Base 2.1.7a
+ KConfigListIncluded at Base 2.1.7a
  KConfigLoadFile at Base 2.0.1
  KConfigMake at Base 2.0.1
  KConfigNodeAddRef at Base 2.0.1
@@ -221,6 +335,7 @@ libkfg.so.1 sra-toolkit-libs0 #MINVER#
  KConfigNodeDropAll at Base 2.0.1
  KConfigNodeDropAttr at Base 2.0.1
  KConfigNodeDropChild at Base 2.0.1
+ KConfigNodeListChild at Base 2.1.7a
  KConfigNodeOpenNodeRead at Base 2.0.1
  KConfigNodeOpenNodeUpdate at Base 2.0.1
  KConfigNodeRead at Base 2.0.1
@@ -447,6 +562,10 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
  KMemBankSetSize at Base 2.0.1
  KMemBankSize at Base 2.0.1
  KMemBankWrite at Base 2.0.1
+ KPOptionCmp at Base 2.1.7a
+ KPOptionMake at Base 2.1.7a
+ KPOptionSort at Base 2.1.7a
+ KPOptionWhack at Base 2.1.7a
  KPageAccessRead at Base 2.0.1
  KPageAccessUpdate at Base 2.0.1
  KPageAddRef at Base 2.0.1
@@ -463,6 +582,22 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
  KPageFileSize at Base 2.0.1
  KPageId at Base 2.0.1
  KPageRelease at Base 2.0.1
+ KPathAddRef at Base 2.1.7a
+ KPathDestroy at Base 2.1.7a
+ KPathGetCWD at Base 2.1.7a
+ KPathMake at Base 2.1.7a
+ KPathMakeCurrentPath at Base 2.1.7a
+ KPathMakeFmt at Base 2.1.7a
+ KPathMakeRelative at Base 2.1.7a
+ KPathMakeSysPath at Base 2.1.7a
+ KPathMakeVFmt at Base 2.1.7a
+ KPathOption at Base 2.1.7a
+ KPathReadFragment at Base 2.1.7a
+ KPathReadPath at Base 2.1.7a
+ KPathReadQuery at Base 2.1.7a
+ KPathRelease at Base 2.1.7a
+ KPathTransformPathHier at Base 2.1.7a
+ KPathTransformSysPath at Base 2.1.7a
  KSymAddrAddRef at Base 2.0.1
  KSymAddrAsFunc at Base 2.0.1
  KSymAddrAsObj at Base 2.0.1
@@ -584,6 +719,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  GetRCStateText at Base 2.0.1
  GetRCTargetIdxText at Base 2.0.1
  GetRCTargetText at Base 2.0.1
+ GetUnreadRCInfo at Base 2.1.7a
  KDataBufferCast at Base 2.0.1
  KDataBufferCheckIntegrity at Base 2.0.1
  KDataBufferMake at Base 2.0.1
@@ -705,6 +841,9 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KSymbolMake at Base 2.0.1
  KSymbolSort at Base 2.0.1
  KSymbolWhack at Base 2.0.1
+ KTimeGlobal at Base 2.1.7a
+ KTimeLocal at Base 2.1.7a
+ KTimeStamp at Base 2.1.7a
  KTokenSourceConsume at Base 2.0.1
  KTokenSourceReturn at Base 2.0.1
  KTokenToF64 at Base 2.0.1
@@ -716,6 +855,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
  KTokenToVersion at Base 2.0.1
  KTokenToWideString at Base 2.0.1
  KTokenizerNext at Base 2.0.1
+ KWrtFmt_error_code at Base 2.1.7a
  KWrtFmt_rc_t at Base 2.0.1
  KWrtInit at Base 2.0.1
  KWrtSysInit at Base 2.0.1
@@ -1202,6 +1342,7 @@ libsradb.so.3 sra-toolkit-libs0 #MINVER#
  SRAMgrMakeRead at Base 2.0.1
  SRAMgrMakeReadWithDir at Base 2.0.1
  SRAMgrMakeSRASchema at Base 2.0.1
+ SRAMgrOpenAltTableRead at Base 2.1.7a
  SRAMgrOpenDatatypesRead at Base 2.0.1
  SRAMgrOpenTableRead at Base 2.0.1
  SRAMgrRelease at Base 2.0.1
@@ -1579,6 +1720,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  VCursorCloseRow at Base 2.0.1
  VCursorCloseRowRead at Base 2.0.1
  VCursorDatatype at Base 2.0.1
+ VCursorDestroy at Base 2.1.7a
  VCursorGetColumnIdx at Base 2.0.1
  VCursorGetSchema at Base 2.0.1
  VCursorGetUserData at Base 2.0.1
@@ -1611,6 +1753,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  VCursorSupplementSchema at Base 2.0.1
  VCursorVAddColumn at Base 2.0.1
  VCursorVGetColumnIdx at Base 2.0.1
+ VCursorWhack at Base 2.1.7a
  VDBManagerAddLoadLibraryPath at Base 2.0.1
  VDBManagerAddRef at Base 2.0.1
  VDBManagerAddSchemaIncludePath at Base 2.0.1
@@ -1648,10 +1791,12 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  VDatabaseOpenManagerRead at Base 2.0.1
  VDatabaseOpenMetadataRead at Base 2.0.1
  VDatabaseOpenParentRead at Base 2.0.1
+ VDatabaseOpenSchema at Base 2.1.7a
  VDatabaseOpenTableRead at Base 2.0.1
  VDatabaseRelease at Base 2.0.1
  VDatabaseSetUserData at Base 2.0.1
  VDatabaseSever at Base 2.0.1
+ VDatabaseTypespec at Base 2.1.7a
  VDatabaseVOpenDBRead at Base 2.0.1
  VDatabaseVOpenTableRead at Base 2.0.1
  VDatabaseVWritable at Base 2.0.1
@@ -1867,6 +2012,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  vardim_type_expr at Base 2.0.1
  vdb_cast at Base 2.0.1
  vdb_compare at Base 2.0.1
+ vdb_detranspose at Base 2.1.7a
  vdb_fixed_row_len at Base 2.0.1
  vdb_hello at Base 2.0.1
  vdb_merge at Base 2.0.1
@@ -1879,6 +2025,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
  vdb_row_len at Base 2.0.1
  vdb_select at Base 2.0.1
  vdb_split at Base 2.0.1
+ vdb_transpose at Base 2.1.7a
 libwkdb.so.1 sra-toolkit-libs0 #MINVER#
  KBTreeAddRef at Base 2.0.1
  KBTreeDropBacking at Base 2.0.1
@@ -1889,9 +2036,9 @@ libwkdb.so.1 sra-toolkit-libs0 #MINVER#
  KBTreeMakeUpdate at Base 2.0.1
  KBTreeRelease at Base 2.0.1
  KBTreeSize at Base 2.0.1
- KBTreeValueAccessRead at Base 2.0.1
- KBTreeValueAccessUpdate at Base 2.0.1
- KBTreeValueWhack at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessRead at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessUpdate at Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueWhack at Base 2.0.1
  KColBlockLocAllocSize at Base 2.0.1
  KColBlockLocEntryCount at Base 2.0.1
  KColBlockLocInfoMerge at Base 2.0.1
@@ -2070,8 +2217,11 @@ libwkdb.so.1 sra-toolkit-libs0 #MINVER#
  KDatabaseListTbl at Base 2.0.1
  KDatabaseLock at Base 2.0.1
  KDatabaseLocked at Base 2.0.1
+ KDatabaseModDate at Base 2.1.7a
  KDatabaseOpenDBRead at Base 2.0.1
  KDatabaseOpenDBUpdate at Base 2.0.1
+ KDatabaseOpenDirectoryRead at Base 2.1.7a
+ KDatabaseOpenDirectoryUpdate at Base 2.1.7a
  KDatabaseOpenIndexRead at Base 2.0.1
  KDatabaseOpenIndexUpdate at Base 2.0.1
  KDatabaseOpenManagerRead at Base 2.0.1
@@ -2287,6 +2437,7 @@ libwsradb.so.3 sra-toolkit-libs0 #MINVER#
  SRAMgrMake at Base 2.0.1
  SRAMgrMakeSRASchema at Base 2.0.1
  SRAMgrMakeUpdate at Base 2.0.1
+ SRAMgrOpenAltTableRead at Base 2.1.7a
  SRAMgrOpenTableRead at Base 2.0.1
  SRAMgrOpenTableUpdate at Base 2.0.1
  SRAMgrRelease at Base 2.0.1
@@ -2609,6 +2760,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VCursorCommitRow at Base 2.0.1
  VCursorDatatype at Base 2.0.1
  VCursorDefault at Base 2.0.1
+ VCursorDestroy at Base 2.1.7a
  VCursorFlushPage at Base 2.0.1
  VCursorGetColumnIdx at Base 2.0.1
  VCursorGetSchema at Base 2.0.1
@@ -2644,6 +2796,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VCursorSupplementSchema at Base 2.0.1
  VCursorVAddColumn at Base 2.0.1
  VCursorVGetColumnIdx at Base 2.0.1
+ VCursorWhack at Base 2.1.7a
  VCursorWrite at Base 2.0.1
  VDBManagerAddLoadLibraryPath at Base 2.0.1
  VDBManagerAddRef at Base 2.0.1
@@ -2686,6 +2839,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VDBMemRelease at Base 2.0.1
  VDatabaseAddRef at Base 2.0.1
  VDatabaseAttach at Base 2.0.1
+ VDatabaseColumnCreateParams at Base 2.1.7a
  VDatabaseCreateDB at Base 2.0.1
  VDatabaseCreateTable at Base 2.0.1
  VDatabaseDropDB at Base 2.0.1
@@ -2707,12 +2861,14 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  VDatabaseOpenMetadataUpdate at Base 2.0.1
  VDatabaseOpenParentRead at Base 2.0.1
  VDatabaseOpenParentUpdate at Base 2.0.1
+ VDatabaseOpenSchema at Base 2.1.7a
  VDatabaseOpenTableRead at Base 2.0.1
  VDatabaseOpenTableUpdate at Base 2.0.1
  VDatabaseRelease at Base 2.0.1
  VDatabaseSetUserData at Base 2.0.1
  VDatabaseSever at Base 2.0.1
  VDatabaseStoreSchema at Base 2.0.1
+ VDatabaseTypespec at Base 2.1.7a
  VDatabaseUnlock at Base 2.0.1
  VDatabaseVCreateDB at Base 2.0.1
  VDatabaseVCreateTable at Base 2.0.1
@@ -2970,6 +3126,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  vardim_type_expr at Base 2.0.1
  vdb_cast at Base 2.0.1
  vdb_compare at Base 2.0.1
+ vdb_detranspose at Base 2.1.7a
  vdb_fixed_row_len at Base 2.0.1
  vdb_hello at Base 2.0.1
  vdb_merge at Base 2.0.1
@@ -2982,3 +3139,4 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
  vdb_row_len at Base 2.0.1
  vdb_select at Base 2.0.1
  vdb_split at Base 2.0.1
+ vdb_transpose at Base 2.1.7a

-- 
Utilities for the NCBI Sequence Read Archive

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