[med-svn] r9233 - in trunk/packages/rostlab: . librg-utils-perl/tags librg-utils-perl/trunk/debian reprof reprof/trunk reprof/trunk/debian reprof/trunk/debian/source

Tue Jan 10 14:14:23 UTC 2012

Author: lkajan-guest
Date: 2012-01-10 14:14:23 +0000 (Tue, 10 Jan 2012)
New Revision: 9233

Added:
   trunk/packages/rostlab/reprof/
   trunk/packages/rostlab/reprof/tags/
   trunk/packages/rostlab/reprof/trunk/
   trunk/packages/rostlab/reprof/trunk/debian/
   trunk/packages/rostlab/reprof/trunk/debian/changelog
   trunk/packages/rostlab/reprof/trunk/debian/compat
   trunk/packages/rostlab/reprof/trunk/debian/control
   trunk/packages/rostlab/reprof/trunk/debian/copyright
   trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install
   trunk/packages/rostlab/reprof/trunk/debian/patches/
   trunk/packages/rostlab/reprof/trunk/debian/reprof.install
   trunk/packages/rostlab/reprof/trunk/debian/rules
   trunk/packages/rostlab/reprof/trunk/debian/source/
   trunk/packages/rostlab/reprof/trunk/debian/source/format
   trunk/packages/rostlab/reprof/trunk/debian/watch
Modified:
   trunk/packages/rostlab/librg-utils-perl/tags/
   trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog
Log:
added reprof tool: a secondary structure and accessibility predictor from Peter Hoenigschmid and Burkhard Rost - to be published


Property changes on: trunk/packages/rostlab/librg-utils-perl/tags
___________________________________________________________________
Added: svn:ignore
   + build-area
tarballs


Modified: trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog
===================================================================

--- trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog	2012-01-10 13:22:22 UTC (rev 9232)
+++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog	2012-01-10 14:14:23 UTC (rev 9233)
@@ -1,3 +1,9 @@
+librg-utils-perl (1.0.43-2) UNRELEASED; urgency=low
+
+  * NOT RELEASED YET
+
+ -- Laszlo Kajan <lkajan at rostlab.org>  Mon, 28 Nov 2011 16:03:12 +0100
+
 librg-utils-perl (1.0.43-1) unstable; urgency=low
 
   * New upstream release


Property changes on: trunk/packages/rostlab/reprof
___________________________________________________________________
Added: svn:ignore
   + build-area
tarballs



Property changes on: trunk/packages/rostlab/reprof/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
   + 1


Added: trunk/packages/rostlab/reprof/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/changelog	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,5 @@
+reprof (1.0.0-1) unstable; urgency=low
+
+  * Initial release (Closes: #655336)
+
+ -- Laszlo Kajan <lkajan at rostlab.org>  Fri, 16 Dec 2011 16:44:22 +0100

Added: trunk/packages/rostlab/reprof/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/compat	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1 @@
+7

Added: trunk/packages/rostlab/reprof/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/control	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/control	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,38 @@
+Source: reprof
+Section: science
+Priority: extra
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Peter Hoenigschmid <hoenigschmid at rostlab.org>, Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: debhelper (>= 7.0.50~), autotools-dev
+Standards-Version: 3.9.2
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/reprof/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/reprof/trunk/
+DM-Upload-Allowed: yes
+Homepage: http://rostlab.org/
+
+Package: reprof
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, librg-reprof-bundle-perl
+Recommends: pp-popularity-contest
+Description: protein secondary structure and accessibility predictor
+ 'reprof' is an improved implementation of 'prof', a popular protein secondary
+ structure and accessibility predictor.  Prediction is either
+ done from protein sequence alone or from an alignment - the latter should be
+  used for optimal performance.
+ .
+ This package provides the 'reprof' command.  It is only a command line
+ interface to the functionality provided by the modules in
+ librg-reprof-bundle-perl.
+
+Package: librg-reprof-bundle-perl
+Section: perl
+Architecture: all
+Depends: ${perl:Depends}, ${misc:Depends}, libai-fann-perl
+Description: protein secondary structure and accessibility predictor
+ 'reprof' is an improved implementation of 'prof', a popular protein secondary
+ structure and accessibility predictor.  Prediction is either
+ done from protein sequence alone or from an alignment - the latter should be
+  used for optimal performance.
+ .
+ This package provides the perl modules implementing 'reprof' along with the
+ necessary data files.

Added: trunk/packages/rostlab/reprof/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/copyright	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,42 @@
+This work was packaged for Debian by:
+
+    Peter Hoenigschmid <hoenigschmid at rostlab.org> on Fri, 16 Dec 2011 16:44:22 +0100
+
+It was downloaded from:
+
+    ftp://rostlab.org/reprof/
+
+Upstream Authors:
+
+    Peter Hoenigschmid <hoenigschmid at rostlab.org>
+    Burkhard Rost
+
+Copyright:
+
+    Copyright (C) 2011 Peter Hoenigschmid, Technical University of Munich, Germany
+    Copyright (C) 2011 Burkhard Rost, Technical University of Munich, Germany
+
+License:
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+ 
+    This package is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>. 
+ 
+On Debian systems, the complete text of the GNU General 
+Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.
+
+The Debian packaging is:
+
+    Copyright (C) 2011 Peter Hoenigschmid <hoenigschmid at rostlab.org>
+
+and is licensed under the GPL version 3,
+see "/usr/share/common-licenses/GPL-3".

Added: trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,2 @@
+usr/share/perl5
+usr/share/reprof

Added: trunk/packages/rostlab/reprof/trunk/debian/reprof.install
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/reprof.install	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/reprof.install	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,3 @@
+usr/bin/reprof
+usr/share/man/man1/reprof.1
+usr/share/doc/reprof/examples

Added: trunk/packages/rostlab/reprof/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/rules	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,16 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=1
+
+%:
+	dh $@ 
+
+override_dh_compress:
+	dh_compress -Xexample.Q


Property changes on: trunk/packages/rostlab/reprof/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/rostlab/reprof/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/source/format	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/rostlab/reprof/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/rostlab/reprof/trunk/debian/watch	2012-01-10 14:14:23 UTC (rev 9233)
@@ -0,0 +1,5 @@
+# Compulsory line, this is a version 3 file
+version=3
+   
+# Uncommment to examine a FTP server
+ftp://rostlab.org/reprof/reprof-([0-9.]*)\.tar\.gz debian uupdate


