[med-svn] r9262 - in trunk/packages/mafft/tags: . 6.864-1/debian
Charles Plessy
plessy at alioth.debian.org
Thu Jan 12 10:14:15 UTC 2012
Author: plessy
Date: 2012-01-12 10:14:14 +0000 (Thu, 12 Jan 2012)
New Revision: 9262
Added:
trunk/packages/mafft/tags/6.864-1/
trunk/packages/mafft/tags/6.864-1/debian/README.test
trunk/packages/mafft/tags/6.864-1/debian/changelog
trunk/packages/mafft/tags/6.864-1/debian/control
trunk/packages/mafft/tags/6.864-1/debian/copyright
trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml
trunk/packages/mafft/tags/6.864-1/debian/watch
Removed:
trunk/packages/mafft/tags/6.864-1/debian/README.Debian
trunk/packages/mafft/tags/6.864-1/debian/changelog
trunk/packages/mafft/tags/6.864-1/debian/control
trunk/packages/mafft/tags/6.864-1/debian/copyright
trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml
trunk/packages/mafft/tags/6.864-1/debian/watch
Log:
[svn-buildpackage] Tagging mafft 6.864-1
Deleted: trunk/packages/mafft/tags/6.864-1/debian/README.Debian
===================================================================
--- trunk/packages/mafft/trunk/debian/README.Debian 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/README.Debian 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,19 +0,0 @@
-mafft for Debian
-----------------
-
-The mafft program is tested when we assemble our binary packages in our build
-network. The following commands are run and compared to a reference output:
-
-mafft test/sample | diff test/sample.fftns2 -
-mafft --maxiterate 100 test/sample | diff test/sample.fftnsi -
-mafft --globalpair test/sample | diff test/sample.gins1 -
-mafft --globalpair --maxiterate 100 test/sample | diff test/sample.ginsi -
-mafft --localpair test/sample | diff test/sample.lins1 -
-mafft --localpair --maxiterate 100 test/sample | diff test/sample.linsi -
-
-The test sample and the reference output are distributed compressed in the
-mafft binary package in the ‘/usr/share/doc/mafft/test’ directory. You can copy
-this directory to a temporary place, uncompress the files and run the above
-commands to reproduce the tests on your local installation.
-
- -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 12:43:21 +0900
Copied: trunk/packages/mafft/tags/6.864-1/debian/README.test (from rev 9258, trunk/packages/mafft/trunk/debian/README.test)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/README.test (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/README.test 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,19 @@
+mafft for Debian
+----------------
+
+The mafft program is tested when we assemble our binary packages in our build
+network. The following commands are run and compared to a reference output:
+
+mafft test/sample | diff test/sample.fftns2 -
+mafft --maxiterate 100 test/sample | diff test/sample.fftnsi -
+mafft --globalpair test/sample | diff test/sample.gins1 -
+mafft --globalpair --maxiterate 100 test/sample | diff test/sample.ginsi -
+mafft --localpair test/sample | diff test/sample.lins1 -
+mafft --localpair --maxiterate 100 test/sample | diff test/sample.linsi -
+
+The test sample and the reference output are distributed compressed in the
+mafft binary package in the ‘/usr/share/doc/mafft/test’ directory. You can copy
+this directory to a temporary place, uncompress the files and run the above
+commands to reproduce the tests on your local installation.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 12:43:21 +0900
Deleted: trunk/packages/mafft/tags/6.864-1/debian/changelog
===================================================================
--- trunk/packages/mafft/trunk/debian/changelog 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/changelog 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,135 +0,0 @@
-mafft (6.860-1) unstable; urgency=low
-
- * New upstream release.
- * Simplified debian/watch.
- * Updated Homepage (debian/control).
- * Compress binary package with xz (debian/control).
-
- -- Charles Plessy <plessy at debian.org> Sun, 18 Sep 2011 14:43:10 +0900
-
-mafft (6.859-1) unstable; urgency=low
-
- * New upstream release.
- * Converted debian/copyright to machine-readable (DEP 5) format.
-
- -- Charles Plessy <plessy at debian.org> Sat, 27 Aug 2011 12:06:00 +0900
-
-mafft (6.857-1) unstable; urgency=low
-
- * New upstream version.
- * Enable multithread, correct FHS path (debian/rules).
- * Removed extra manpage copies instead of patching Makefile and
- installing via debhleper (debian/patches, debian/rules, debian/manpages).
- * Removed debian/dirs, not needed anymore.
- * Run the tests after installation, and allow them to fail (debian/rules).
- * Build when running debian/rules build (override typo, Closes: #636634).
- * Corrected VCS fields in debian/control.
- * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2
- (debian/control, no changes needed).
-
- -- Charles Plessy <plessy at debian.org> Fri, 05 Aug 2011 09:54:09 +0900
-
-mafft (6.850-1) unstable; urgency=low
-
- * New upstream version
- * Adapted patch to new upstream
- * Debhelper 8 (control + compat)
- * debian/rules: Switch to dh
- * debian/links: override broken symlinks created in Makefile
-
- -- Andreas Tille <tille at debian.org> Sat, 12 Mar 2011 00:02:43 +0100
-
-mafft (6.833-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Wed, 17 Nov 2010 13:51:28 +0100
-
-mafft (6.815-1) unstable; urgency=low
-
- * New upstream version
- * Switch to source format 3.0 (quilt)
- * Standards-Version: 3.9.1 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Thu, 05 Aug 2010 10:29:50 +0200
-
-mafft (6.811-1) unstable; urgency=low
-
- * New upstream version
- * Standards-Version: 3.8.4 (no changes needed)
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 13:08:06 +0200
-
-mafft (6.717-1) unstable; urgency=low
-
- * New upstream version
- * Added a few informations about Upstream in debian/upstream-metadata.yaml.
- * Documented how this package is tested in debian/README.Debian.
- * Refreshed debian/copyright, using the verbatim upstream license,
- indented with a tabulation.
-
- -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 13:02:59 +0900
-
-mafft (6.716-1) unstable; urgency=low
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 12:39:12 +0100
-
-mafft (6.713-1) unstable; urgency=low
-
- [ David Paleino ]
- * debian/control:
- - removed myself from Uploaders
-
- [ Andreas Tille ]
- * New upstream version
- * debian/control:
- - Standards-Version: 3.8.3 (no changes needed)
- - s/Debian-Med/Debian Med/
- - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby
- script in /usr/bin using blast and lynx.
- * debhelper 7
- * No need for debian/patches/Securisation-by-mktemp-usage.patch any more
- * debian/watch: Handle -with.*-extensions naming - we are dealing
- with the without-extensions tarball in Debian
-
- -- Andreas Tille <tille at debian.org> Mon, 28 Sep 2009 09:02:30 +0200
-
-mafft (6.240-2) unstable; urgency=high
-
- [ Charles Plessy ]
- * debian/control:
- - Moved the Homepage: field out from the package's description.
- - Enhances: t-coffee.
- * Updated my email address.
- * Securisation of the temorary files of mafft-homologs:
- - debian/control: build-depend on quilt.
- - debian/rules: modified to use quilt.
- - debian/README.source: signals that the package uses quilt.
- - debian/patches: added a patch to use non-guessable temporary files
- (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs
- Kinkhorst for preliminary, Kazutaka Katoh for the final implementation,
- and Michael Schutte for the final review.
- - debian/mafft-homologs.1*, debian/README.Debian: document that the
- program is patched.
-
- [ David Paleino ]
- * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
- * debian/control:
- - B-D updated (see above)
- - added myself to Uploaders
- - moved XS-Vcs-* fields to Vcs-*
- - Updated to Standards-Version 3.7.3 (no changes needed)
- * debian/rules:
- - reflecting static build of manpages
- - minor changes
-
- -- Charles Plessy <plessy at debian.org> Mon, 25 Aug 2008 23:30:20 +0900
-
-mafft (6.240-1) unstable; urgency=low
-
- * Initial release (Closes: #409640)
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 9 Jun 2007 12:06:43 +0900
-
Copied: trunk/packages/mafft/tags/6.864-1/debian/changelog (from rev 9261, trunk/packages/mafft/trunk/debian/changelog)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/changelog (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/changelog 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,144 @@
+mafft (6.864-1) unstable; urgency=low
+
+ * New upstream release.
+ * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control).
+ * Renamed debian/README.Debian debian/README.test.
+ * Track the new website in debian/watch.
+
+ -- Charles Plessy <plessy at debian.org> Thu, 12 Jan 2012 19:00:31 +0900
+
+mafft (6.860-1) unstable; urgency=low
+
+ * New upstream release.
+ * Simplified debian/watch.
+ * Updated Homepage (debian/control).
+ * Compress binary package with xz (debian/control).
+
+ -- Charles Plessy <plessy at debian.org> Sun, 18 Sep 2011 14:43:10 +0900
+
+mafft (6.859-1) unstable; urgency=low
+
+ * New upstream release.
+ * Converted debian/copyright to machine-readable (DEP 5) format.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 27 Aug 2011 12:06:00 +0900
+
+mafft (6.857-1) unstable; urgency=low
+
+ * New upstream version.
+ * Enable multithread, correct FHS path (debian/rules).
+ * Removed extra manpage copies instead of patching Makefile and
+ installing via debhleper (debian/patches, debian/rules, debian/manpages).
+ * Removed debian/dirs, not needed anymore.
+ * Run the tests after installation, and allow them to fail (debian/rules).
+ * Build when running debian/rules build (override typo, Closes: #636634).
+ * Corrected VCS fields in debian/control.
+ * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2
+ (debian/control, no changes needed).
+
+ -- Charles Plessy <plessy at debian.org> Fri, 05 Aug 2011 09:54:09 +0900
+
+mafft (6.850-1) unstable; urgency=low
+
+ * New upstream version
+ * Adapted patch to new upstream
+ * Debhelper 8 (control + compat)
+ * debian/rules: Switch to dh
+ * debian/links: override broken symlinks created in Makefile
+
+ -- Andreas Tille <tille at debian.org> Sat, 12 Mar 2011 00:02:43 +0100
+
+mafft (6.833-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Wed, 17 Nov 2010 13:51:28 +0100
+
+mafft (6.815-1) unstable; urgency=low
+
+ * New upstream version
+ * Switch to source format 3.0 (quilt)
+ * Standards-Version: 3.9.1 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Thu, 05 Aug 2010 10:29:50 +0200
+
+mafft (6.811-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards-Version: 3.8.4 (no changes needed)
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 13:08:06 +0200
+
+mafft (6.717-1) unstable; urgency=low
+
+ * New upstream version
+ * Added a few informations about Upstream in debian/upstream-metadata.yaml.
+ * Documented how this package is tested in debian/README.Debian.
+ * Refreshed debian/copyright, using the verbatim upstream license,
+ indented with a tabulation.
+
+ -- Charles Plessy <plessy at debian.org> Mon, 14 Dec 2009 13:02:59 +0900
+
+mafft (6.716-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Tue, 03 Nov 2009 12:39:12 +0100
+
+mafft (6.713-1) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/control:
+ - removed myself from Uploaders
+
+ [ Andreas Tille ]
+ * New upstream version
+ * debian/control:
+ - Standards-Version: 3.8.3 (no changes needed)
+ - s/Debian-Med/Debian Med/
+ - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby
+ script in /usr/bin using blast and lynx.
+ * debhelper 7
+ * No need for debian/patches/Securisation-by-mktemp-usage.patch any more
+ * debian/watch: Handle -with.*-extensions naming - we are dealing
+ with the without-extensions tarball in Debian
+
+ -- Andreas Tille <tille at debian.org> Mon, 28 Sep 2009 09:02:30 +0200
+
+mafft (6.240-2) unstable; urgency=high
+
+ [ Charles Plessy ]
+ * debian/control:
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
+ * Updated my email address.
+ * Securisation of the temorary files of mafft-homologs:
+ - debian/control: build-depend on quilt.
+ - debian/rules: modified to use quilt.
+ - debian/README.source: signals that the package uses quilt.
+ - debian/patches: added a patch to use non-guessable temporary files
+ (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs
+ Kinkhorst for preliminary, Kazutaka Katoh for the final implementation,
+ and Michael Schutte for the final review.
+ - debian/mafft-homologs.1*, debian/README.Debian: document that the
+ program is patched.
+
+ [ David Paleino ]
+ * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
+ * debian/control:
+ - B-D updated (see above)
+ - added myself to Uploaders
+ - moved XS-Vcs-* fields to Vcs-*
+ - Updated to Standards-Version 3.7.3 (no changes needed)
+ * debian/rules:
+ - reflecting static build of manpages
+ - minor changes
+
+ -- Charles Plessy <plessy at debian.org> Mon, 25 Aug 2008 23:30:20 +0900
+
+mafft (6.240-1) unstable; urgency=low
+
+ * Initial release (Closes: #409640)
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Sat, 9 Jun 2007 12:06:43 +0900
+
Deleted: trunk/packages/mafft/tags/6.864-1/debian/control
===================================================================
--- trunk/packages/mafft/trunk/debian/control 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/control 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,37 +0,0 @@
-Source: mafft
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Charles Plessy <plessy at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), quilt (>= 0.47)
-Standards-Version: 3.9.2
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mafft/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mafft/trunk/
-Homepage: http://mafft.cbrc.jp/alignment/software/
-
-Package: mafft
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Recommends: blast2, lynx, ruby
-Enhances: t-coffee
-Description: Multiple alignment program for amino acid or nucleotide sequences
- MAFFT is a multiple sequence alignment program which offers three
- accuracy-oriented methods:
- * L-INS-i (probably most accurate; recommended for <200 sequences;
- iterative refinement method incorporating local pairwise alignment
- information),
- * G-INS-i (suitable for sequences of similar lengths; recommended for
- <200 sequences; iterative refinement method incorporating global
- pairwise alignment information),
- * E-INS-i (suitable for sequences containing large unalignable regions;
- recommended for <200 sequences),
- and five speed-oriented methods:
- * FFT-NS-i (iterative refinement method; two cycles only),
- * FFT-NS-i (iterative refinement method; max. 1000 iterations),
- * FFT-NS-2 (fast; progressive method),
- * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
- method with a rough guide tree),
- * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
- method with the PartTree algorithm).
Copied: trunk/packages/mafft/tags/6.864-1/debian/control (from rev 9260, trunk/packages/mafft/trunk/debian/control)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/control (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/control 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,39 @@
+Source: mafft
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), quilt (>= 0.47)
+Standards-Version: 3.9.2
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mafft/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mafft/trunk/
+Homepage: http://mafft.cbrc.jp/alignment/software/
+
+Package: mafft
+Architecture: any
+# Needed until after Ubuntu 12.04 LTS.
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: blast2, lynx, ruby
+Enhances: t-coffee
+Description: Multiple alignment program for amino acid or nucleotide sequences
+ MAFFT is a multiple sequence alignment program which offers three
+ accuracy-oriented methods:
+ * L-INS-i (probably most accurate; recommended for <200 sequences;
+ iterative refinement method incorporating local pairwise alignment
+ information),
+ * G-INS-i (suitable for sequences of similar lengths; recommended for
+ <200 sequences; iterative refinement method incorporating global
+ pairwise alignment information),
+ * E-INS-i (suitable for sequences containing large unalignable regions;
+ recommended for <200 sequences),
+ and five speed-oriented methods:
+ * FFT-NS-i (iterative refinement method; two cycles only),
+ * FFT-NS-i (iterative refinement method; max. 1000 iterations),
+ * FFT-NS-2 (fast; progressive method),
+ * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
+ method with a rough guide tree),
+ * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
+ method with the PartTree algorithm).
Deleted: trunk/packages/mafft/tags/6.864-1/debian/copyright
===================================================================
--- trunk/packages/mafft/trunk/debian/copyright 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/copyright 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,48 +0,0 @@
-Format: http://dep.debian.net/deps/dep5/
-Source: http://mafft.cbrc.jp/alignment/software/mafft-6.860-without-extensions-src.tgz
-Comment: Debian only distributes MAFFT without its extensions.
- The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’
- directory, which contains code from the Vienna RNA package, that does not allow
- commercial use and is therefore unsuitable for Debian.
-
-Files: *
-Copyright: © 2009 Kazutaka Katoh
-License: mafft
- Redistribution and use in source and binary forms,
- with or without modification, are permitted provided
- that the following conditions are met:
- .
- Redistributions of source code must retain the
- above copyright notice, this list of conditions
- and the following disclaimer. Redistributions in
- binary form must reproduce the above copyright
- notice, this list of conditions and the following
- disclaimer in the documentation and/or other
- materials provided with the distribution.
- .
- The name of the author may not be used to endorse
- or promote products derived from this software without
- specific prior written permission.
- .
- THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS"
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
- MERCHANTABILITY AND FITNESS FOR A PARTICULAR
- PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
- AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
- INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
- DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
- OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
- OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
- AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
- STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
- OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
- THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
- OF SUCH DAMAGE.
-
-Files: debian/*
-Copyright: (C) 2007 Charles Plessy <charles at debian.org>,
- (C) 2009 Andreas Tille <tille at debian.org>
-License: same-as-mafft
- See above
-
Copied: trunk/packages/mafft/tags/6.864-1/debian/copyright (from rev 9261, trunk/packages/mafft/trunk/debian/copyright)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/copyright (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/copyright 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,48 @@
+Format: http://dep.debian.net/deps/dep5/
+Source: http://mafft.cbrc.jp/alignment/software/mafft-6.864-without-extensions-src.tgz
+Comment: Debian only distributes MAFFT without its extensions.
+ The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’
+ directory, which contains code from the Vienna RNA package, that does not allow
+ commercial use and is therefore unsuitable for Debian.
+
+Files: *
+Copyright: © 2009 Kazutaka Katoh
+License: mafft
+ Redistribution and use in source and binary forms,
+ with or without modification, are permitted provided
+ that the following conditions are met:
+ .
+ Redistributions of source code must retain the
+ above copyright notice, this list of conditions
+ and the following disclaimer. Redistributions in
+ binary form must reproduce the above copyright
+ notice, this list of conditions and the following
+ disclaimer in the documentation and/or other
+ materials provided with the distribution.
+ .
+ The name of the author may not be used to endorse
+ or promote products derived from this software without
+ specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
+ BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+ MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+ PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
+ AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
+ INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
+ OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
+ OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
+ AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+ OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
+ THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY
+ OF SUCH DAMAGE.
+
+Files: debian/*
+Copyright: (C) 2007 Charles Plessy <charles at debian.org>,
+ (C) 2009 Andreas Tille <tille at debian.org>
+License: same-as-mafft
+ See above
+
Deleted: trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/mafft/trunk/debian/upstream-metadata.yaml 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,16 +0,0 @@
-Contact: Kazutaka Katoh <katoh at bioreg.kyushu-u.ac.jp>
-DOI: 10.1093/bib/bbn013
-Name: MAFFT
-Homepage: http://align.bmr.kyushu-u.ac.jp/mafft/software/
-PMID: 18372315
-Reference-Author: Katoh, Kazutaka and Toh, Hiroyuki
-Reference-Journal: Brief Bioinform
-Reference-Number: 4
-Reference-Pages: 286-298
-Reference-Title: Recent developments in the MAFFT multiple sequence alignment program
-Reference-URL: http://bib.oxfordjournals.org/cgi/content/abstract/9/4/286
-Reference-Volume: 9
-Reference-Year: 2008
-Watch: |
- opts=uversionmangle=s/-with-extensions-src//,dversionmangle=s/([\d.]+)/$1-without-extensions/ \
- http://align.bmr.kyushu-u.ac.jp/mafft/software/source.html mafft-(.*)-src\.tgz
Copied: trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml (from rev 9257, trunk/packages/mafft/trunk/debian/upstream-metadata.yaml)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/upstream-metadata.yaml 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,15 @@
+Contact: Kazutaka Katoh <katoh at bioreg.kyushu-u.ac.jp>
+DOI: 10.1093/bib/bbn013
+Name: MAFFT
+Homepage: http://mafft.cbrc.jp/alignment/software/
+PMID: 18372315
+Reference-Author: Katoh, Kazutaka and Toh, Hiroyuki
+Reference-Journal: Brief Bioinform
+Reference-Number: 4
+Reference-Pages: 286-298
+Reference-Title: Recent developments in the MAFFT multiple sequence alignment program
+Reference-URL: http://bib.oxfordjournals.org/cgi/content/abstract/9/4/286
+Reference-Volume: 9
+Reference-Year: 2008
+Watch: |
+ http://mafft.cbrc.jp/alignment/software/source.html mafft-(.*)-with-extensions-src.tgz
Deleted: trunk/packages/mafft/tags/6.864-1/debian/watch
===================================================================
--- trunk/packages/mafft/trunk/debian/watch 2012-01-12 06:08:29 UTC (rev 9255)
+++ trunk/packages/mafft/tags/6.864-1/debian/watch 2012-01-12 10:14:14 UTC (rev 9262)
@@ -1,2 +0,0 @@
-version=3
-http://align.bmr.kyushu-u.ac.jp/mafft/software/source.html mafft-(.*)-without-extensions-src\.tgz
Copied: trunk/packages/mafft/tags/6.864-1/debian/watch (from rev 9256, trunk/packages/mafft/trunk/debian/watch)
===================================================================
--- trunk/packages/mafft/tags/6.864-1/debian/watch (rev 0)
+++ trunk/packages/mafft/tags/6.864-1/debian/watch 2012-01-12 10:14:14 UTC (rev 9262)
@@ -0,0 +1,2 @@
+version=3
+http://mafft.cbrc.jp/alignment/software/source.html mafft-(.*)-with-extensions-src.tgz
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