[med-svn] r9266 - trunk/packages/beast-mcmc/trunk/debian

Andreas Tille tille at alioth.debian.org
Thu Jan 12 14:02:36 UTC 2012


Author: tille
Date: 2012-01-12 14:02:35 +0000 (Thu, 12 Jan 2012)
New Revision: 9266

Modified:
   trunk/packages/beast-mcmc/trunk/debian/copyright
Log:
Enhanced copyright


Modified: trunk/packages/beast-mcmc/trunk/debian/copyright
===================================================================
--- trunk/packages/beast-mcmc/trunk/debian/copyright	2012-01-12 11:01:48 UTC (rev 9265)
+++ trunk/packages/beast-mcmc/trunk/debian/copyright	2012-01-12 14:02:35 UTC (rev 9266)
@@ -1,30 +1,30 @@
-Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+Upstream-Name: BEAST-MCMC
+Upstream-Contact: Alexei Drummond <alexei at cs.auckland.ac.nz>,
+                   Andrew Rambaut <a.rambaut at ed.ac.uk>
+Original-Source: http://beast-mcmc.googlecode.com/svn/trunk/
 
-Name: BEAST-MCMC
-Source: http://beast-mcmc.googlecode.com/svn/trunk/
-
 Copyright: 2002-2006 Alexei Drummond and Andrew Rambaut
 License: LGPL-3+
-	
-	This program is free software: you can redistribute it and/or modify
-	it under the terms of the GNU Lesser General Public License as published by
-	the Free Software Foundation, either version 3 of the License, or
-	(at your option) any later version.
-	 
-	This program is distributed in the hope that it will be useful,
-	but WITHOUT ANY WARRANTY; without even the implied warranty of
-	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-	GNU General Public License for more details.
-	 
-	You should have received a copy of the GNU Lesser General Public License
-	along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ .
+ On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
+ in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
+ version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.
 
-On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included
-in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license
-version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’.
-
 Files: lib/beagle.jar
-Copyright: (C) 2007-2011 Brian L. Browning
+Copyright: 2007-2011 Brian L. Browning
 License:
 	You may download and use the BEAGLE executable file for non-commercial
 	and commercial research.   BEAGLE is distributed on an "AS IS" basis. 
@@ -47,29 +47,82 @@
 
 	Brian
 
+Files: lib/colt.jar
+Copyright: 1999 CERN - European Organization for Nuclear Research.
+License: Colt License Agreement
+ Packages cern.colt* , cern.jet*, cern.clhep
+ .
+    Permission to use, copy, modify, distribute and sell this software and its
+    documentation for any purpose is hereby granted without fee, provided that
+    the above copyright notice appear in all copies and that both that
+    copyright notice and this permission notice appear in supporting
+    documentation. CERN makes no representations about the suitability of this
+    software for any purpose. It is provided "as is" without expressed or
+    implied warranty.
+ .
+ Packages hep.aida.*
+ .
+    Written by Pavel Binko, Dino Ferrero Merlino, Wolfgang Hoschek, Tony
+    Johnson, Andreas Pfeiffer, and others. Check the FreeHEP home page for more
+    info. Permission to use and/or redistribute this work is granted under the
+    terms of the LGPL License, with the exception that any usage related to
+    military applications is expressly forbidden. The software and
+    documentation made available under the terms of this license are provided
+    with no warranty.
+Comment: Needs to be packaged separately from source
+ The source of the jar is available at
+    http://acs.lbl.gov/software/colt/
+ and needs separate packaging for Debian.  This is planed to be done in
+ the future.
 
-License: other
+Files: lib/mpj.jar
+Copyright: 2005 - 2007
+   1. Distributed Systems Group, University of Portsmouth (2005)
+   2. Aamir Shafi (2005 - 2007)
+   3. Bryan Carpenter (2005 - 2007)
+   4. Mark Baker (2005 - 2007)
+License: The MIT License
+ The bulk of code in this distribution was developed by the Distributed Systems
+ Group at the University of Portsmouth. Some sections of the code like
+ the buffering API and derived datatypes include contributions developed at
+ the Community Grids Lab at Indiana University.
+ .
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN
+ NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
+ DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
+ OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
+ THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ .
+ 2. MPJ uses two third party softwares: Jetty and Java Service Wrapper project.
+    The licenses for these two projects can be seen in
+    $MPJ_HOME/THIRDPARTYLICENSES file.
+Comment: Needs to be packaged separately from source
+ The source of the jar is available at
+    http://sourceforge.net/projects/mpjexpress/
+ and needs separate packaging for Debian.  This is planed to be done in
+ the future.
 
-    BEAST includes software libraries from projects whose licensing
-    terms require that the following notices be included when they are
-    distributed in binary form and that the recipient be given a copy of
-    their respective licenses.
-    
-    This product includes software developed by the
-    JDOM Project (http://www.jdom.org/)
-    
-    This product includes software developed by
-    The Apache Software Foundation (http://www.apache.org/)
-    
-    The license for JDOM can be read in the LICENSE.txt file in the
-    source distribution available at http://www.jdom.org/
-    
-    The license for the Commons Math library can be read at
-    http://www.apache.org/licenses/LICENSE-2.0 or in the LICENSE.txt file
-    in the source distribution available at
-    http://jakarta.apache.org/commons/math/
+Files: lib/mtj.jar
+Copyright: 2003-2006 Bjørn-Ove Heimsund
+License: LGPL-3+
+ On Debian GNU/Linux system you can find the text at
+ /usr/share/common-licenses/LGPL-3
+Comment: Needs to be packaged separately from source
+ The source of the jar is available at
+    http://code.google.com/p/matrix-toolkits-java/
+ and needs separate packaging for Debian.  This is planed to be done in
+ the future.
 
-The package has to be regarded as non-free as long as it ships with binary
-jar files which come without source.
-
-This package was debianized by Felix Feyertag <felix.feyertag at googlemail.com>.




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