[med-svn] [Debian Wiki] Update of "DebianMed/Meeting/Southport2012" by TimBooth

[Debian Wiki]

Dear Wiki user,

You have subscribed to a wiki page or wiki category on "Debian Wiki" for change notification.

The "DebianMed/Meeting/Southport2012" page has been changed by TimBooth:
http://wiki.debian.org/DebianMed/Meeting/Southport2012?action=diff&rev1=60&rev2=61

Comment:
Added sponsors and final confirmations

  After the success of the last [[DebianMed/Meeting/Luebeck2011|Debian Med sprint meeting in Lübeck]] we were granted the opportunity to organise a similar event in early 2012.  This page assists in planning the event and records outcomes of the meeting.
  
  The main organiser is Tim Booth (tbooth_ceh.ac.uk), the lead NEBC Bio-Linux developer.
+ 
+ == Sponsorship ==
+ 
+ || We would like to thank Sci``Engines for providing the FPGA tutorial on the Friday || We would like to thank Eucalyptus for sponsoring dinner on Saturday night ||
+ ||<:> [[http://sciengines.com|{{http://www.sciengines.com/templates/rhuk_milkyway/images/sciengines/sciengines_logo.jpg}}]] ||<:> [[http://eucalyptus.com|{{http://www.eucalyptus.com/sites/all/img/logos/eucalyptus-300x32.png}}]] ||
  
  == Location/Date/Capacity ==
  
@@ -73, +78 @@

  ||14|| Quyen Nguyen     || pre.sur_h-its.org  || HITS (Seek) || Heidelberg (D) || Friday  || Monday  || confirmed 14/12 || From Manchester with Alan+Stuart ||
  ||15|| Martin Steghöfer || msteghofer_cistib.upf.edu || CISTIB/Gimias (workflows) || Barcelona (E) || Fri 27.01.12 || Sun 29.01.12 || confirmed 18/1/12 || ||
  ||16|| Matus Kalas      || pre.sur_bccs.uib.no|| U Bergen || Bergen (N) || Thur || Sat || confirmed 11/1/12 || ||
- ||17|| Stefan Baumgart  || presur_sciengines.com || SciEngines  || Kiel (D)        ||  Thu       || ||  || ||
+ ||17|| Stefan Baumgart  || presur_sciengines.com || SciEngines  || Kiel (D)        ||  Thu       || Sun || confirmed 20/1 || Staying at Carlton House ||
- ||18|| Daniel Siebert   ||                       || SciEngines  || Kiel (D)        ||  Thu       || ||  || ||
+ ||18|| Daniel Siebert   ||                       || SciEngines  || Kiel (D)        ||  Thu       || Sun || confirmed 20/1 || Staying at Carlton House ||
  ||19|| William Spooner  || pre.sur at eaglegenomics.com      || Eagle Genomics || Babraham (UK) || Fri || Mon || confirmed 9/1/12 || Staying at Rosedale.  May have to cancel at last minute due to deadline ||
  ||20|| Jim Procter      || jsur_compbio.dundee.ac.uk || U Dundee (Jalview,java in debian, osgi) || Dundee (UK) || Thu 26.01.12 || Mon 30.01.12 || confirmed 20/12 || Staying at Rosedale ||
  
- 
- == Sponsorship ==
- 
- Without wanting to taint the non-corporate volunteer nature of Debian, attending these events is expensive.  We thank Debian for supporting the travel of its developers and all the employing institutions for their support. And quite some participants pay the travel from their private pockets. Sponsors for food and travel are welcome.
  
  == Agenda ==
  
@@ -106, +107 @@

    * What packages are missing in Debian to render new kinds of workflows a reality with Debian?
   * getData / BioMaj
    * first packages using it
+   * standardising interaction between databases and packages/Debian policy - (consider extensions to APT? - Tim)
    * better integration with above workflows
+   * effectiveness in Cloud/cluster environments
+   * comparison with the data management configuration in Galaxy
    * other further developments?!?
   * Review of what came up on the mailing list
    * Renaming of user-executable files to fully comply with Debian Policy for scientific packages (like omitting .pl suffix)
@@ -120, +124 @@

    * 21-22: icebreaking 7-15min talk series: how Debian helps today and after this sprint
     * Laszlo and Piero: structure prediction
     * Stuart and Ivo: system biology
+    * Tim and Soon: Bringing the Galaxy server to Debian
     * tba: alignments
     * tba: workflows
    * 23-24: discussions and planning of synchronisation points on Sat/Sun