[med-svn] r9433 - in trunk/packages/libhmsbeagle/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2012-01-25 13:35:03 +0000 (Wed, 25 Jan 2012)
New Revision: 9433

Removed:
   trunk/packages/libhmsbeagle/trunk/debian/rules_peter
Modified:
   trunk/packages/libhmsbeagle/trunk/debian/changelog
   trunk/packages/libhmsbeagle/trunk/debian/patches/disable_cpu_sse_plugin.patch
Log:
Clean up some useless bytes forgotten to lcean up before last upload; Add Forewarded field to patch


Modified: trunk/packages/libhmsbeagle/trunk/debian/changelog
===================================================================
--- trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-01-25 13:28:03 UTC (rev 9432)
+++ trunk/packages/libhmsbeagle/trunk/debian/changelog	2012-01-25 13:35:03 UTC (rev 9433)
@@ -1,3 +1,11 @@
+libhmsbeagle (1.0-5) UNRELEASED; urgency=low
+
+  * Remove useless remainings which were forgotten to clean up in last
+    upload (debian/rules_peter; template comments in
+    debian/patches/disable_cpu_sse_plugin.patch
+
+ -- Andreas Tille <tille at debian.org>  Wed, 25 Jan 2012 14:28:17 +0100
+
 libhmsbeagle (1.0-4) unstable; urgency=low
 
   * debian/patches/disable_cpu_sse_plugin.patch: Apply patch from Peter

Modified: trunk/packages/libhmsbeagle/trunk/debian/patches/disable_cpu_sse_plugin.patch
===================================================================
--- trunk/packages/libhmsbeagle/trunk/debian/patches/disable_cpu_sse_plugin.patch	2012-01-25 13:28:03 UTC (rev 9432)
+++ trunk/packages/libhmsbeagle/trunk/debian/patches/disable_cpu_sse_plugin.patch	2012-01-25 13:35:03 UTC (rev 9433)
@@ -2,20 +2,10 @@
  The CPU_SSE plugin does not build without -msse
 Author: Peter Green <plugwash at p10link.net>
 Bug-Debian: http://bugs.debian.org/656755
+Forwarded: "Marc A. Suchard" <msuchard at ucla.edu>, Aaron Darling <aarondarling at ucdavis.edu>
+Reviewed-By: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 25 Jan 2012
 
----
-The information above should follow the Patch Tagging Guidelines, please
-checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
-are templates for supplementary fields that you might want to add:
-
-Origin: <vendor|upstream|other>, <url of original patch>
-Bug: <url in upstream bugtracker>
-Bug-Debian: http://bugs.debian.org/<bugnumber>
-Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
-Forwarded: <no|not-needed|url proving that it has been forwarded>
-Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: <YYYY-MM-DD>
-
 Index: libhmsbeagle-1.0.new/libhmsbeagle/CPU/Makefile.am
 ===================================================================
 --- libhmsbeagle-1.0.new.orig/libhmsbeagle/CPU/Makefile.am	2012-01-25 10:09:40.000000000 +0000

Deleted: trunk/packages/libhmsbeagle/trunk/debian/rules_peter
===================================================================
--- trunk/packages/libhmsbeagle/trunk/debian/rules_peter	2012-01-25 13:28:03 UTC (rev 9432)
+++ trunk/packages/libhmsbeagle/trunk/debian/rules_peter	2012-01-25 13:35:03 UTC (rev 9433)
@@ -1,107 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# debian/rules of libhmsbeagle
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
-
-%:
-	dh $@ --with autoreconf --with javahelper
-
-override_dh_auto_configure:
-	./autogen.sh
-	dh_auto_configure -- --enable-doxygen-man --enable-march-native=no --enable-sse=no
-
-override_dh_auto_build:
-	$(MAKE)
-	$(MAKE) doxygen-doc
-	ant
-
-override_dh_auto_install:
-	dh_auto_install
-	#Shunt jni .so to jni directory.
-	mkdir -p -m755 debian/tmp/usr/lib/jni
-	mv debian/tmp/usr/lib/*jni.* debian/tmp/usr/lib/jni
-
-	# will be removed later anyway (see below)
-	# sed -i "s/libdir='\/usr\/lib'/libdir='\/usr\/lib\/jni'/" debian/tmp/usr/lib/jni/libhmsbeagle-jni.la
-
-	# Remove unneeded *.la files according to
-	# http://lists.debian.org/debian-devel/2009/08/msg00783.html
-	# Release goal: Getting rid of unneeded *.la / emptying dependency_libs
-	find debian -name "*.la" -delete
-
-override_dh_installman:
-	# Fix whatis entry of doxygen generated man pages if possible
-	find doc/man/man3 -name "*.3" -exec sed -i "/^.SH NAME/{;N;N;N;s/\(.SH NAME\)[[:space:]]*\([A-Za-z].*-\).*.PP[[:space:]]*\([A-Za-z].*\)/\1\n\2 \3/g;}" \{\} \;
-	dh_installman
-
-override_dh_auto_clean:
-	$(MAKE) -f Makefile distclean || true
-	rm -rf doc .config configure
-	rm -rf lib build
-	rm -f acinclude.m4
-	rm -f INSTALL
-	rm -f libhmsbeagle/config.h.in
-	rm -f examples/*/Makefile.in
-	rm -f examples/Makefile.in
-	rm -f examples/*/*.o
-	rm -rf examples/*/.libs
-	rm -rf libhmsbeagle/*/.libs
-	rm -rf libhmsbeagle/.libs
-	rm -rf libhmsbeagle/*.o
-	rm -rf libhmsbeagle/*/*.o
-	rm -f Makefile
-	rm -f config.log
-	rm -f config.status
-	rm -f examples/Makefile
-	rm -f examples/complextest/Makefile
-	rm -f examples/complextest/complextest
-	rm -f examples/fourtaxon/Makefile
-	rm -f examples/fourtaxon/check_lnL_using_paup.nex
-	rm -f examples/fourtaxon/fourtaxon
-	rm -f examples/fourtaxon/fourtaxonrun.sh
-	rm -f examples/genomictest/Makefile
-	rm -f examples/genomictest/genomictest
-	rm -f examples/genomictest/genomictest.sh
-	rm -f examples/matrixtest/Makefile
-	rm -f examples/matrixtest/matrixtest
-	rm -f examples/oddstatetest/Makefile
-	rm -f examples/oddstatetest/oddstatetest
-	rm -f examples/tinytest/Makefile
-	rm -f examples/tinytest/tinytest
-	rm -f hmsbeagle-1.pc
-	rm -f libhmsbeagle/CPU/Makefile
-	rm -f libhmsbeagle/CPU/libhmsbeagle-cpu.la
-	rm -f libhmsbeagle/CPU/libhmsbeagle_cpu_la-BeagleCPUPlugin.lo
-	rm -f libhmsbeagle/GPU/Makefile
-	rm -f libhmsbeagle/GPU/kernels/Makefile
-	rm -f libhmsbeagle/Makefile
-	rm -f libhmsbeagle/config.h
-	rm -f libhmsbeagle/libhmsbeagle-jni.la
-	rm -f libhmsbeagle/libhmsbeagle.la
-	rm -f libhmsbeagle/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo
-	rm -f libhmsbeagle/libhmsbeagle_la-beagle.lo
-	rm -f libhmsbeagle/plugin/Makefile
-	rm -f libhmsbeagle/plugin/libplugin.la
-	rm -f libhmsbeagle/plugin/libplugin_la-Plugin.lo
-	rm -f libhmsbeagle/plugin/libplugin_la-UnixSharedLibrary.lo
-	rm -f libhmsbeagle/stamp-h1
-	rm -f libtool
-	rm -f aclocal.m4
-	rm -f m4/libtool.m4
-	rm -f m4/ltoptions.m4
-	rm -f m4/ltsugar.m4
-	rm -f m4/ltversion.m4
-	rm -f m4/lt~obsolete.m4
-
-
-# Does not help to fix the lintian issue ... hmmm
-#override_dh_shlibdeps:
-#	# somehow shlibdeps is not called for jni subdir
-#	dh_shlibdeps -- debian/$(pkg)1/usr/lib/jni/* debian/$(pkg)1/usr/lib/lib*
-
-get-orig-source:
-	. debian/get-orig-source