[med-svn] r9449 - in trunk/packages: . libpal-java libpal-java/trunk libpal-java/trunk/debian libpal-java/trunk/debian/source
Andreas Tille
tille at alioth.debian.org
Fri Jan 27 12:52:06 UTC 2012
Author: tille
Date: 2012-01-27 12:52:06 +0000 (Fri, 27 Jan 2012)
New Revision: 9449
Added:
trunk/packages/libpal-java/
trunk/packages/libpal-java/trunk/
trunk/packages/libpal-java/trunk/debian/
trunk/packages/libpal-java/trunk/debian/changelog
trunk/packages/libpal-java/trunk/debian/compat
trunk/packages/libpal-java/trunk/debian/control
trunk/packages/libpal-java/trunk/debian/copyright
trunk/packages/libpal-java/trunk/debian/get-orig-source
trunk/packages/libpal-java/trunk/debian/install
trunk/packages/libpal-java/trunk/debian/rules
trunk/packages/libpal-java/trunk/debian/source/
trunk/packages/libpal-java/trunk/debian/source/format
trunk/packages/libpal-java/trunk/debian/watch
Log:
INject libpal-java
Added: trunk/packages/libpal-java/trunk/debian/changelog
===================================================================
--- trunk/packages/libpal-java/trunk/debian/changelog (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/changelog 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,5 @@
+libpal-java (1.5.1-1) unstable; urgency=low
+
+ * Initial Debian Upload (Closes: ???)
+
+ -- Andreas Tille <tille at debian.org> Mon, 14 Mar 2011 19:18:08 +0100
Added: trunk/packages/libpal-java/trunk/debian/compat
===================================================================
--- trunk/packages/libpal-java/trunk/debian/compat (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/compat 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1 @@
+8
Added: trunk/packages/libpal-java/trunk/debian/control
===================================================================
--- trunk/packages/libpal-java/trunk/debian/control (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/control 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,24 @@
+Source: libpal-java
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 8), javahelper (>=0.25)
+Build-Depends-Indep: default-jdk, ant
+Standards-Version: 3.9.2
+Section: java
+Homepage: http://www.cebl.auckland.ac.nz/pal-project/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libpal-java/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/libpal-java/trunk/
+
+Package: libpal-java
+Architecture: all
+Depends: ${java:Depends}, ${misc:Depends}
+Recommends: ${java:Recommends}
+Description: Java Evolutionary Biology Library
+ The PAL project is a collaborative effort to provide a high quality
+ Java library for use in molecular evolution and phylogenetics. At
+ present PAL consists of approximately 200 public classes/interfaces in
+ 16 packages Please refer to the API documentation for a detailed
+ description of all classes and methods available, and to the release
+ history for an overview of the development history of PAL.
Added: trunk/packages/libpal-java/trunk/debian/copyright
===================================================================
--- trunk/packages/libpal-java/trunk/debian/copyright (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/copyright 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,32 @@
+Format: http://dep.debian.net/deps/dep5/
+Upstream-Name: PAL (Phylogenetic Analysis Library)
+Upstream-Contact: Matthew Goode <m.goode at auckland.ac.nz>
+Source: http://www.cebl.auckland.ac.nz/pal-project/
+
+Files: *
+Copyright: © 2002-2011 Matthew Goode <m.goode at auckland.ac.nz>
+ © 2000-2011 Alexei Drummond <alexei.drummond at zoo.ox.ac.uk>
+ © 2001-2011 Ed Buckler <buckler at statgen.ncsu.edu>
+ © 1999-2011 Korbinian Strimmer <strimmer at stat.uni-muenchen.de>
+
+Licence: LGPL-2.1
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 2.1 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+Comment:
+ On Debian systems, you can read the full text of the GNU Lesser General Public
+ License in ‘/usr/share/common-licenses/LGPL-2.1’.
+
+Files: debian/*
+Copyright: © 2011 Andreas Tille <tille at debian.org>
+License: PD
+ The packaging work is in the public domain unless stated otherwise.
Added: trunk/packages/libpal-java/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/libpal-java/trunk/debian/get-orig-source (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/get-orig-source 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,30 @@
+#!/bin/sh
+# unpack libpal-java tarball to get rid of several binaries
+
+set -e
+NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
+UPSTREAMNAME=`echo $NAME | sed 's/lib\(.*\)-java/\1/'`
+
+if ! echo $@ | grep -q upstream-version ; then
+ VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
+else
+ VERSION=`echo $@ | sed "s?^.*--upstream-version \([0-9.]\+\) .*${UPSTREAMNAME}.*?\1?"`
+ if echo "$VERSION" | grep -q "upstream-version" ; then
+ echo "Unable to parse version number"
+ exit
+ fi
+fi
+
+TARDIR=pal-1.5.1
+mkdir -p ../tarballs/${TARDIR}
+cd ../tarballs
+mv ../${TARDIR}-src.zip .
+cd ${TARDIR}
+unzip -q ../${TARDIR}-src.zip
+
+# Remove code which is not needed
+rm -rf src/org doc/COPYRIGHT-org.w3c.dom.html doc/.*html*
+cd ..
+
+GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -czf "$NAME"_"$VERSION".orig.tar.gz "${TARDIR}"
+rm -rf ${TARDIR}
Property changes on: trunk/packages/libpal-java/trunk/debian/get-orig-source
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/libpal-java/trunk/debian/install
===================================================================
--- trunk/packages/libpal-java/trunk/debian/install (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/install 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1 @@
+src/dist/lib/* usr/share/java
Added: trunk/packages/libpal-java/trunk/debian/rules
===================================================================
--- trunk/packages/libpal-java/trunk/debian/rules (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/rules 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,15 @@
+#!/usr/bin/make -f
+
+JAVA_HOME=/usr/lib/jvm/default-java
+
+%:
+ dh $@ --with javahelper
+
+override_dh_auto_clean:
+ cd src; ant clean
+
+override_dh_auto_build:
+ ant -buildfile src/build.xml
+
+get-orig-source:
+ . debian/get-orig-source
Property changes on: trunk/packages/libpal-java/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/libpal-java/trunk/debian/source/format
===================================================================
--- trunk/packages/libpal-java/trunk/debian/source/format (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/source/format 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/libpal-java/trunk/debian/watch
===================================================================
--- trunk/packages/libpal-java/trunk/debian/watch (rev 0)
+++ trunk/packages/libpal-java/trunk/debian/watch 2012-01-27 12:52:06 UTC (rev 9449)
@@ -0,0 +1,3 @@
+version=3
+http://www.cebl.auckland.ac.nz/pal-project/download.html bin/pal-([.\d]+)-src\.zip \
+ debian debian/get-orig-source
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