[med-svn] r9473 - trunk/packages/gmod/chado/trunk/debian

[olivier sallou]

Author: osallou-guest
Date: 2012-01-28 09:47:24 +0000 (Sat, 28 Jan 2012)
New Revision: 9473

Added:
   trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs
Modified:
   trunk/packages/gmod/chado/trunk/debian/control
   trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs
   trunk/packages/gmod/chado/trunk/debian/rules
Log:
separate libs from bins

Added: trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs	                        (rev 0)
+++ trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs	2012-01-28 09:47:24 UTC (rev 9473)
@@ -0,0 +1,2 @@
+usr/share/gmod/chado/bin
+usr/share/man/man1

Modified: trunk/packages/gmod/chado/trunk/debian/control
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/control	2012-01-28 08:38:44 UTC (rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/control	2012-01-28 09:47:24 UTC (rev 9473)
@@ -16,7 +16,7 @@
 Package: libchado-perl
 Architecture: all
 Depends: ${misc:Depends}, ${perl:Depends}, postgresql-client, libbio-chado-schema-perl
-Recommends: xsltproc
+Recommends: xsltproc, chado-utils
 Description: database schema and tools for genomic data
  Chado is a relational database schema that underlies many GMOD
  installations. It is capable of representing many of the general
@@ -27,3 +27,18 @@
  of the most sophisticated relational schemas currently available in
  molecular biology. The price of this capability is that the new user
  must spend some time becoming familiar with its fundamentals.
+
+Package: chado-utils
+Architecture: all
+Depends: ${misc:Depends}, ${perl:Depends}, libchado-perl
+Recomments: xsltproc
+Description: tools to add/extract data from Chado
+ This package contains several tools that can be used to 
+ extract data from Chado database or prepare data before upload.
+ It is a subset above the Chado database schema and libraries.
+ .
+ Chado is a relational database schema that underlies many GMOD
+ installations. It is capable of representing many of the general
+ classes of data frequently encountered in modern biology such as
+ sequence, sequence comparisons, phenotypes, genotypes, ontologies,
+ publications, and phylogeny.

Modified: trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs	2012-01-28 08:38:44 UTC (rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs	2012-01-28 09:47:24 UTC (rev 9473)
@@ -1,4 +1,5 @@
 usr/share/gmod/chado/bin
+usr/share/man/man3
 etc/gmod
 usr/share/perl5
 usr/share/gmod/chado/lib/Bio/Chado

Modified: trunk/packages/gmod/chado/trunk/debian/rules
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/rules	2012-01-28 08:38:44 UTC (rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/rules	2012-01-28 09:47:24 UTC (rev 9473)
@@ -6,13 +6,6 @@
 export CHADO_DB_NAME=gmod-chado
 export PREFIX=/usr
 
-#$(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf:
-#	mkdir -p $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf
-#	touch $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf
-#	touch $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf/default.conf
-#
-#%: $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf
-
 %:
 	dh $@ --buildsystem=perl_makemaker
 
@@ -33,10 +26,11 @@
 	find debian/libchado-perl/ -name .packlist | xargs rm -f
 	chmod 755 debian/libchado-perl/usr/share/gmod/chado/soi/t/t_soi_parse_intersect
 	chmod 755 debian/libchado-perl/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl
-	mv debian/libchado-perl/usr/bin/* debian/libchado-perl/usr/share/gmod/chado/bin/
-	mv debian/libchado-perl/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/
+	mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/
+	mv debian/tmp/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/
 	rm -rf debian/libchado-perl/usr/lib/perl5
-	mv debian/libchado-perl/usr/man debian/libchado-perl/usr/share/
+	mv debian/tmp/usr/man/man3 debian/libchado-perl/usr/share/man3
+	mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man1
 	cp debian/testdb.pl debian/libchado-perl/usr/share/gmod/chado/bin/
 	rm -rf debian/libchado-perl/usr/share/perl5/x86_64-linux-gnu-thread-multi
 	# Needed for runtime configure