[med-svn] r11774 - in trunk/packages/norsp/trunk: . debian debian/source
Eva Reisinger
reisinger-guest at alioth.debian.org
Fri Jul 13 11:31:37 UTC 2012
Author: reisinger-guest
Date: 2012-07-13 11:31:37 +0000 (Fri, 13 Jul 2012)
New Revision: 11774
Added:
trunk/packages/norsp/trunk/debian/
trunk/packages/norsp/trunk/debian/changelog
trunk/packages/norsp/trunk/debian/compat
trunk/packages/norsp/trunk/debian/control
trunk/packages/norsp/trunk/debian/copyright
trunk/packages/norsp/trunk/debian/rules
trunk/packages/norsp/trunk/debian/source/
trunk/packages/norsp/trunk/debian/source/format
trunk/packages/norsp/trunk/debian/upstream
trunk/packages/norsp/trunk/debian/watch
Log:
adding project files
Property changes on: trunk/packages/norsp/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/norsp/trunk/debian/changelog
===================================================================
--- trunk/packages/norsp/trunk/debian/changelog (rev 0)
+++ trunk/packages/norsp/trunk/debian/changelog 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,24 @@
+norsp (1.0.3) unstable; urgency=low
+
+ * recommends now on ncoils (>= 2002-3)
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Thu, 27 Oct 2011 20:22:02 +0200
+
+norsp (1.0.2) unstable; urgency=low
+
+ * warning when popcon not installed
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Mon, 28 Feb 2011 18:02:41 +0100
+
+norsp (1.0.1) unstable; urgency=low
+
+ * popularity contest
+ * bugzilla new url
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Fri, 18 Feb 2011 17:09:24 +0100
+
+norsp (1.0.0) unstable; urgency=low
+
+ * Initial Release.
+
+ -- Guy Yachdav <gyachdav at rostlab.org> Thu, 23 Dec 2010 10:21:12 +0100
Added: trunk/packages/norsp/trunk/debian/compat
===================================================================
--- trunk/packages/norsp/trunk/debian/compat (rev 0)
+++ trunk/packages/norsp/trunk/debian/compat 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1 @@
+8
Added: trunk/packages/norsp/trunk/debian/control
===================================================================
--- trunk/packages/norsp/trunk/debian/control (rev 0)
+++ trunk/packages/norsp/trunk/debian/control 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,16 @@
+Source: norsp
+Section: science
+Priority: extra
+Maintainer: Guy Yachdav <gyachdav at rostlab.org>
+Uploaders: Laszlo Kajan <lkajan at rostlab.org>
+Build-Depends: debhelper (>= 7), autotools-dev
+Standards-Version: 3.9.1
+Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure
+
+Package: norsp
+Architecture: any
+Depends: ${misc:Depends}
+Recommends: pp-popularity-contest, profphd, profphd-utils, ncoils (>= 2002-3)
+Description: predictor of NOn-Regular Secondary Structure
+ Many structurally flexible regions play important roles in biological processes. It has been shown that extended loopy regions are very abundant in nature, and that they are evolutionarily conserved. NORSp is a publicly available predictor for disordered regions in protein. Specifically, it predicts long regions with no regular secondary structure. Upon user submission of protein sequence, NORSp will analyse the protein about its secondary structure, and presence of transmembrane helices and coiled-coil. It will then return e-mail to user about the presence and position of disordered regions.NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the protein-protein interaction sites coincide with NORS region.
+
Added: trunk/packages/norsp/trunk/debian/copyright
===================================================================
--- trunk/packages/norsp/trunk/debian/copyright (rev 0)
+++ trunk/packages/norsp/trunk/debian/copyright 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,26 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: norsp
+Source: http://www.predictprotein.org
+
+Files: *
+Copyright: 2010 ROSTLAB
+License: GPL-3.0+
+
+
+License: GPL-3.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL'.
Added: trunk/packages/norsp/trunk/debian/rules
===================================================================
--- trunk/packages/norsp/trunk/debian/rules (rev 0)
+++ trunk/packages/norsp/trunk/debian/rules 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,105 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+ifneq ($(DEB_HOST_GNU_TYPE),$(DEB_BUILD_GNU_TYPE))
+CROSS= --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
+else
+CROSS= --build $(DEB_BUILD_GNU_TYPE)
+endif
+
+
+
+config.status: configure
+ dh_testdir
+ # Add here commands to configure the package.
+ifneq "$(wildcard /usr/share/misc/config.sub)" ""
+ cp -f /usr/share/misc/config.sub config.sub
+endif
+ifneq "$(wildcard /usr/share/misc/config.guess)" ""
+ cp -f /usr/share/misc/config.guess config.guess
+endif
+ ./configure $(CROSS) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs" --sysconfdir=/etc
+
+
+build: build-stamp
+
+build-stamp: config.status
+ dh_testdir
+
+ # Add here commands to compile the package.
+ $(MAKE)
+ #docbook-to-man debian/norsp.sgml > norsp.1
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+
+ # Add here commands to clean up after the build process.
+ [ ! -f Makefile ] || $(MAKE) distclean
+ rm -f config.sub config.guess
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_prep
+ dh_installdirs
+
+ # Add here commands to install the package into debian/norsp.
+ $(MAKE) DESTDIR=$(CURDIR)/debian/norsp install
+
+
+# Build architecture-independent files here.
+binary-indep: build install
+# We have nothing to do by default.
+
+# Build architecture-dependent files here.
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_python
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+# dh_perl
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/norsp/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/norsp/trunk/debian/source/format
===================================================================
--- trunk/packages/norsp/trunk/debian/source/format (rev 0)
+++ trunk/packages/norsp/trunk/debian/source/format 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/norsp/trunk/debian/upstream
===================================================================
--- trunk/packages/norsp/trunk/debian/upstream (rev 0)
+++ trunk/packages/norsp/trunk/debian/upstream 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,13 @@
+Bug-Database: https://rostlab.org/bugzilla3/buglist.cgi?product=norsp
+Bug-Submit: https://rostlab.org/bugzilla3/enter_bug.cgi?product=norsp
+Reference:
+ Author: Liu J and Rost B
+ Title: NORSp Predictions of long regions without regular secondary structure
+ Journal: Nucleic Acids Res
+ Year: 2003
+ Volume: 1
+ Number: 31
+ PMID: 12824431
+ Type: article
+ URL: http://www.ncbi.nlm.nih.gov/pubmed?term=norsp
+ Eprint: http://nar.oxfordjournals.org/content/31/13/3833.long
Added: trunk/packages/norsp/trunk/debian/watch
===================================================================
--- trunk/packages/norsp/trunk/debian/watch (rev 0)
+++ trunk/packages/norsp/trunk/debian/watch 2012-07-13 11:31:37 UTC (rev 11774)
@@ -0,0 +1,4 @@
+# watch control file for uscan
+version=3
+ftp://rostlab.org/norsp/norsp-(.+)\.tar\.gz debian uupdate
+
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