[med-svn] r11791 - trunk/packages/predictnls/trunk/debian
Laszlo Kajan
lkajan-guest at alioth.debian.org
Fri Jul 13 14:55:20 UTC 2012
Author: lkajan-guest
Date: 2012-07-13 14:55:20 +0000 (Fri, 13 Jul 2012)
New Revision: 11791
Added:
trunk/packages/predictnls/trunk/debian/README.source
Modified:
trunk/packages/predictnls/trunk/debian/changelog
trunk/packages/predictnls/trunk/debian/control
trunk/packages/predictnls/trunk/debian/copyright
trunk/packages/predictnls/trunk/debian/rules
trunk/packages/predictnls/trunk/debian/upstream
Log:
fixed d/copyright; added note about not compressing examples in docdir; added Julia and myself as uploaders
Added: trunk/packages/predictnls/trunk/debian/README.source
===================================================================
--- trunk/packages/predictnls/trunk/debian/README.source (rev 0)
+++ trunk/packages/predictnls/trunk/debian/README.source 2012-07-13 14:55:20 UTC (rev 11791)
@@ -0,0 +1,7 @@
+predictnls for Debian
+=====================
+
+Uncompressed examples
+---------------------
+dh_compress excludes examples that appear on the man page.
+This is in order to allow the example to work as it is pasted on the command like from the man page.
Modified: trunk/packages/predictnls/trunk/debian/changelog
===================================================================
--- trunk/packages/predictnls/trunk/debian/changelog 2012-07-13 13:28:04 UTC (rev 11790)
+++ trunk/packages/predictnls/trunk/debian/changelog 2012-07-13 14:55:20 UTC (rev 11791)
@@ -1,4 +1,4 @@
-predictnls (1.0.19-1) unstable; urgency=low
+predictnls (1.0.20-1) unstable; urgency=low
* initial release (Closes: #681271)
Modified: trunk/packages/predictnls/trunk/debian/control
===================================================================
--- trunk/packages/predictnls/trunk/debian/control 2012-07-13 13:28:04 UTC (rev 11790)
+++ trunk/packages/predictnls/trunk/debian/control 2012-07-13 14:55:20 UTC (rev 11791)
@@ -2,22 +2,19 @@
Section: science
Priority: extra
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Julia Ertl <ertlj at in.tum.de>
+Uploaders: Julia Ertl <ertlj at in.tum.de>, Laszlo Kajan <lkajan at rostlab.org>
Build-Depends: debhelper (>= 8), autotools-dev
Standards-Version: 3.9.3
-Homepage: http://www.rostlab.org/services/predictNLS/
+Homepage: http://rostlab.org/services/predictNLS/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/predictnls/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/predictnls/trunk/
+DM-Upload-Allowed: yes
Package: predictnls
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, perl
Recommends: pp-popularity-contest
-Description: prediction and analysis of nuclear localization signals
- predictnls is a method for the prediction and analysis of nuclear
- localization signals (NLS).
- Submit a protein sequence or a potential NLS. PredictNLS predicts that
- that protein is nuclear or finds out whether this potential NLS is found in
- the used database. The program also compiles statistics on the number of
- nuclear/non-nuclear proteins in which your potential NLS is found. Finally,
- proteins with similar NLS motifs are reported, and the experimental paper
- describing the particular NLS are given. If no NLS is found, you can predict
- the subcellular localization of the protein using LOCtree.
+Description: prediction and analysis of protein nuclear localization signals
+ predictnls is a method for the prediction and analysis of protein nuclear
+ localization signals (NLS). In addition to reporting the positions of
+ NLSs found, predictnls also gives short statistics.
Modified: trunk/packages/predictnls/trunk/debian/copyright
===================================================================
--- trunk/packages/predictnls/trunk/debian/copyright 2012-07-13 13:28:04 UTC (rev 11790)
+++ trunk/packages/predictnls/trunk/debian/copyright 2012-07-13 14:55:20 UTC (rev 11791)
@@ -3,20 +3,33 @@
Upstream-Contact: Laszlo Kajan <lkajan at rostlab.org>
Source: ftp://rostlab.org/predictnls/
+Files: debian/*
+Copyright: 2010, 2012 Laszlo Kajan <lkajan at rostlab.org> Technical University Munich, Germany
+ 2012 Julia Ertl <ertlj at in.tum.de>
+License: GPL-3+
+
Files: *
-Copyright: Copyright 2010 R. Nair
+Copyright: 2010 Rajesh Nair <rajnair5 at gmail.com>
License: GPL-3+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 3 of the License, or
- (at your option) any later version.
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
- On Debian systems, the full text of the GNU General Public
- License version 3 can be found in the file
- `/usr/share/common-licenses/GPL-3'.
+
+License: GPL-3+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
Modified: trunk/packages/predictnls/trunk/debian/rules
===================================================================
--- trunk/packages/predictnls/trunk/debian/rules 2012-07-13 13:28:04 UTC (rev 11790)
+++ trunk/packages/predictnls/trunk/debian/rules 2012-07-13 14:55:20 UTC (rev 11791)
@@ -1,6 +1,10 @@
#!/usr/bin/make -f
-# -*- makefile -*-
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
+
+.PHONY: override_dh_compress
+override_dh_compress:
+ dh_compress -Xexamples/O49931.fa
+
%:
dh $@
Modified: trunk/packages/predictnls/trunk/debian/upstream
===================================================================
--- trunk/packages/predictnls/trunk/debian/upstream 2012-07-13 13:28:04 UTC (rev 11790)
+++ trunk/packages/predictnls/trunk/debian/upstream 2012-07-13 14:55:20 UTC (rev 11791)
@@ -1,11 +1,12 @@
Reference:
- - Author: Murat Cokol, Rajesh Nair, and Burkhard Rost
- Title: Finding nuclear localization signals
+ - Author: Murat Cokol and Rajesh Nair and Burkhard Rost
+ Title: 'Finding nuclear localization signals.'
Journal: EMBO reports
- Volume: 15
+ Volume: 1
+ Number: 5
Pages: 411-415
Year: 2000
URL: http://www.nature.com/embor/journal/v1/n5/full/embor546.html
eprint: http://www.nature.com/embor/journal/v1/n5/pdf/embor546.pdf
- PMID: 1083765
+ PMID: 11258480
DOI: 10.1093/embo-reports/kvd092
More information about the debian-med-commit
mailing list