[med-svn] [SCM] tabix branch, meta, updated. meta/0.2.5-3-2-gad71039
Charles Plessy
plessy at debian.org
Sat Jul 14 12:52:29 UTC 2012
The following commit has been merged in the meta branch:
commit ad710398c587ddd41f18b6a51fe97dd7cab873cc
Author: Charles Plessy <plessy at debian.org>
Date: Sat Jul 14 21:42:26 2012 +0900
Build logs for tabix 0.2.6-1.
diff --git a/armel.log b/armel.log
index 7f8985b..ccc2450 100644
--- a/armel.log
+++ b/armel.log
@@ -1,4 +1,4 @@
-From buildd at arnold.debian.org Sat May 12 09:15:37 2012
+From buildd at arnold.debian.org Fri Jun 22 05:24:02 2012
Return-path: <buildd at arnold.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,23 +6,23 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1ST8QL-0004P6-LR
- for logs at buildd.debian.org; Sat, 12 May 2012 09:15:37 +0000
+ id 1ShwLi-0007iu-3n
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:24:02 +0000
Received: from arnold.islands.arm.com ([217.140.96.57] helo=arnold.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=arnold.debian.org, EMAIL=hostmaster at arnold.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at arnold.debian.org>)
- id 1ST8QK-0002AW-Mv
- for logs at buildd.debian.org; Sat, 12 May 2012 09:15:36 +0000
+ id 1ShwLg-0002iH-KJ
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:24:00 +0000
Received: from buildd by arnold.debian.org with local (Exim 4.72)
(envelope-from <buildd at arnold.debian.org>)
- id 1ST8QJ-00006T-Fd; Sat, 12 May 2012 09:15:35 +0000
-Date: Sat, 12 May 2012 09:15:35 +0000
-Message-Id: <E1ST8QJ-00006T-Fd at arnold.debian.org>
+ id 1ShwLf-0006bE-Gy; Fri, 22 Jun 2012 05:23:59 +0000
+Date: Fri, 22 Jun 2012 05:23:59 +0000
+Message-Id: <E1ShwLf-0006bE-Gy at arnold.debian.org>
From: buildd on arnold <buildd at arnold.debian.org>
To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on armel (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on armel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -30,36 +30,31 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on arnold.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (armel) 12 mai 2012 09:09 ║
+║ tabix 0.2.6-1 (armel) 22 Jun 2012 05:18 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: armel
-Get:1 http://ftp.uk.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6280 kB]
+Get:1 http://ftp.uk.debian.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6280 kB]
-Get:7 http://ftp.uk.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.uk.debian.org unstable/non-free Sources [96.6 kB]
-Get:9 http://ftp.uk.debian.org unstable/main armel Packages [5845 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:12 http://incoming.debian.org unstable/main armel Packages [5845 kB]
-Get:13 http://ftp.uk.debian.org unstable/contrib armel Packages [37.1 kB]
-Get:14 http://ftp.uk.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:15 http://ftp.uk.debian.org unstable/main Translation-en [3952 kB]
-Get:16 http://incoming.debian.org unstable/contrib armel Packages [37.1 kB]
-Get:17 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:18 http://incoming.debian.org unstable/main Translation-en [3952 kB]
-Get:19 http://incoming.debian.org Sources [43.1 kB]
-Get:20 http://incoming.debian.org Packages [713 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 2min 23s (235 kB/s)
+Get:5 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:6 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:7 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:8 http://incoming.debian.org unstable/main armel Packages [5946 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://ftp.uk.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://ftp.uk.debian.org unstable/main armel Packages [5946 kB]
+Get:12 http://incoming.debian.org unstable/contrib armel Packages [37.8 kB]
+Get:13 http://incoming.debian.org Release [1601 B]
+Get:14 http://incoming.debian.org Sources [63.5 kB]
+Get:15 http://ftp.uk.debian.org unstable/contrib armel Packages [37.8 kB]
+Get:16 http://incoming.debian.org Packages [840 kB]
+Fetched 26.3 MB in 1min 42s (258 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -80,11 +75,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (142 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (88.1 kB/s)
Download complete and in download only mode
Check arch
@@ -98,18 +93,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
+fakeroot: already installed (1.18.4-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 43 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 43 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -118,37 +113,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
+debianutils: already installed (4.3.1)
diffutils: already installed (1:3.2-6)
dpkg: already installed (1.16.3)
e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
+ncurses-base: already installed (5.9-8)
+ncurses-bin: already installed (5.9-8)
+perl-base: already installed (5.14.2-11)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
sysvinit-utils: already installed (2.88dsf-22.1)
sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
-gcc: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-33)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -158,7 +153,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -170,109 +165,116 @@ The following NEW packages will be installed:
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
zlib1g-dev
-0 upgraded, 21 newly installed, 0 to remove and 19 not upgraded.
-Need to get 9665 kB of archives.
-After this operation, 24.9 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.1-1 [34.9 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-7 [26.3 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.11-1 [251 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 1:8.30-5 [241 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.7.8.dfsg-9 [819 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.32.2-1 [1962 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.5-1 [142 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-7 [130 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.1 [208 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-7 [1071 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.1-2 [1034 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.11-1 [52.9 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-7 [135 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-7 [1874 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.7.dfsg-1 [210 kB]
+The following packages will be upgraded:
+ zlib1g
+1 upgraded, 21 newly installed, 0 to remove and 42 not upgraded.
+Need to get 9776 kB of archives.
+After this operation, 25.0 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main zlib1g armel 1:1.2.7.dfsg-12 [87.4 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.1-1 [34.9 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-9 [26.4 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.11-1 [251 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 1:8.30-5 [241 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.8.0+dfsg1-4 [824 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.32.3-1 [1962 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.5-1 [142 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-9 [132 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.3 [208 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-7 [1071 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.2-1 [1025 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.11-1 [52.9 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-9 [138 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-9 [1888 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.7.dfsg-12 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9665 kB in 4s (2215 kB/s)
+Fetched 9776 kB in 5s (1715 kB/s)
+(Reading database ... 10666 files and directories currently installed.)
+Preparing to replace zlib1g:armel 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_armel.deb) ...
+Unpacking replacement zlib1g:armel ...
+Setting up zlib1g:armel (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:armel.
-(Reading database ... 10643 files and directories currently installed.)
+(Reading database ... 10666 files and directories currently installed.)
Unpacking libpipeline1:armel (from .../libpipeline1_1.2.1-1_armel.deb) ...
Selecting previously unselected package libasprintf0c2:armel.
-Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-7_armel.deb) ...
+Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-9_armel.deb) ...
Selecting previously unselected package libmagic1:armel.
Unpacking libmagic1:armel (from .../libmagic1_5.11-1_armel.deb) ...
Selecting previously unselected package libpcre3:armel.
Unpacking libpcre3:armel (from .../libpcre3_1%3a8.30-5_armel.deb) ...
Selecting previously unselected package libxml2:armel.
-Unpacking libxml2:armel (from .../libxml2_2.7.8.dfsg-9_armel.deb) ...
+Unpacking libxml2:armel (from .../libxml2_2.8.0+dfsg1-4_armel.deb) ...
Selecting previously unselected package libffi5:armel.
Unpacking libffi5:armel (from .../libffi5_3.0.10-3_armel.deb) ...
Selecting previously unselected package libglib2.0-0:armel.
-Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.32.2-1_armel.deb) ...
+Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.32.3-1_armel.deb) ...
Selecting previously unselected package libcroco3:armel.
Unpacking libcroco3:armel (from .../libcroco3_0.6.5-1_armel.deb) ...
Selecting previously unselected package libunistring0:armel.
Unpacking libunistring0:armel (from .../libunistring0_0.9.3-5_armel.deb) ...
Selecting previously unselected package libgettextpo0:armel.
-Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-7_armel.deb) ...
+Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-9_armel.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armel.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_armel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_armel.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_armel.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_armel.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_armel.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armel.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_armel.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_armel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:armel.
-Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_armel.deb) ...
+Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_armel.deb) ...
Setting up libpipeline1:armel (1.2.1-1) ...
-Setting up libasprintf0c2:armel (0.18.1.1-7) ...
+Setting up libasprintf0c2:armel (0.18.1.1-9) ...
Setting up libmagic1:armel (5.11-1) ...
Setting up libpcre3:armel (1:8.30-5) ...
-Setting up libxml2:armel (2.7.8.dfsg-9) ...
+Setting up libxml2:armel (2.8.0+dfsg1-4) ...
Setting up libffi5:armel (3.0.10-3) ...
-Setting up libglib2.0-0:armel (2.32.2-1) ...
+Setting up libglib2.0-0:armel (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armel (0.6.5-1) ...
Setting up libunistring0:armel (0.9.3-5) ...
-Setting up libgettextpo0:armel (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:armel (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:armel (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:armel (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 42 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-5 g++-4.6_4.6.3-5 gcc_4:4.6.3-5 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-7 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.2 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-7 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1 libgomp1_4.7.0-7 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.16-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-7 gcc-4.6_4.6.3-7 libc6-dev_2.13-33 libstdc++6_4.7.0-11 libstdc++6-4.6-dev_4.6.3-7 linux-libc-dev_3.2.19-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-2 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-7 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.4-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-7 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7-base_4.7.0-11 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-2 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-11 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.0-11 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-8 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-12 libss2_1.42.2-2 libstdc++6_4.7.0-11 libstdc++6-4.6-dev_4.6.3-7 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-8 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.19-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian6 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-8 ncurses-bin_5.9-8 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -283,15 +285,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -301,46 +301,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture armel
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -380,9 +380,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armel-aTadcV/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armel-hraZMI/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -392,62 +392,59 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../tabix_0.2.5-3_armel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../tabix_0.2.6-1_armel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0915
+Build finished at 20120622-0523
-tabix_0.2.5-3_armel.changes:
+tabix_0.2.6-1_armel.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: armel
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 942e93e1f35c98c272eaed266a7e7f9321712c23 56522 tabix_0.2.5-3_armel.deb
+ c598732d5ab425a6089bca4fefe96ac92b2dc4d6 56982 tabix_0.2.6-1_armel.deb
Checksums-Sha256:
- 4857c1c3dd2aabeab0180d54d83e14dbe870ac01ecf14536b8120ad035e2a8e7 56522 tabix_0.2.5-3_armel.deb
+ ff1b74545924b22b4959202feac3d438cd051602026b69a97326d24e93346932 56982 tabix_0.2.6-1_armel.deb
Files:
- 5c68b2d0e3e908c77b54b55dd9c92f3e 56522 science optional tabix_0.2.5-3_armel.deb
+ df7f416ec382252ee9e5998683c13471 56982 science optional tabix_0.2.6-1_armel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_armel.deb
+tabix_0.2.6-1_armel.deb
───────────────────────
new debian package, version 2.0.
- size 56522 bytes: control archive= 996 bytes.
+ size 56982 bytes: control archive= 994 bytes.
780 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: armel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 143
+ Installed-Size: 147
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -460,26 +457,26 @@ tabix_0.2.5-3_armel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 09:15 ./
-drwxr-xr-x root/root 0 2012-05-12 09:14 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 09:15 ./usr/bin/
--rwxr-xr-x root/root 26288 2012-05-12 09:15 ./usr/bin/bgzip
--rwxr-xr-x root/root 63332 2012-05-12 09:15 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 09:14 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 09:14 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 09:15 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 09:14 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 09:14 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 09:15 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 09:14 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-lrwxrwxrwx root/root 0 2012-05-12 09:15 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/bin/
+-rwxr-xr-x root/root 26296 2012-06-22 05:23 ./usr/bin/bgzip
+-rwxr-xr-x root/root 67432 2012-06-22 05:23 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:23 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:23 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2012-06-22 05:23 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -493,7 +490,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armel-sbuild-68cce964-f47f-4ec1-988a-63d7307ec5ab/build/buildd-tabix_0.2.5-3-armel-aTadcV
+Purging /var/lib/schroot/mount/sid-armel-sbuild-3c75ac68-a4b0-44e2-a8ea-a74de7364c2a/build/buildd-tabix_0.2.6-1-armel-hraZMI
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -501,19 +498,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armel
-Build-Space: 1472
-Build-Time: 84
+Build-Space: 1448
+Build-Time: 82
Distribution: sid
-Install-Time: 97
-Job: tabix_0.2.5-3
+Install-Time: 95
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 366
-Source-Version: 0.2.5-3
-Space: 1472
+Package-Time: 316
+Source-Version: 0.2.6-1
+Space: 1448
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0915
-Build needed 00:06:06, 1472k disc space
+Finished at 20120622-0523
+Build needed 00:05:16, 1448k disc space
Signature with key '364BAAB7' requested:
diff --git a/armhf.log b/armhf.log
index 7a53839..216bb39 100644
--- a/armhf.log
+++ b/armhf.log
@@ -1,67 +1,60 @@
-From buildd at hildegard.debian.org Sat May 12 07:32:50 2012
-Return-path: <buildd at hildegard.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at hummel.debian.org Fri Jun 22 05:03:55 2012
+Return-path: <buildd at hummel.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at hildegard.debian.org>)
- id 1ST6os-0002Kf-9b
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:50 +0000
-Received: from hildegard.ynic.york.ac.uk ([144.32.168.74]
- helo=hildegard.debian.org)
+ (Exim 4.72) (envelope-from <buildd at hummel.debian.org>)
+ id 1Shw2F-0005Xg-CE
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:03:55 +0000
+Received: from hummel.ynic.york.ac.uk ([144.32.168.76] helo=hummel.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=hildegard.debian.org,
- EMAIL=hostmaster at hildegard.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at hildegard.debian.org>)
- id 1ST6or-00050T-AG
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:49 +0000
-Received: from buildd by hildegard.debian.org with local (Exim 4.77)
- (envelope-from <buildd at hildegard.debian.org>)
- id 1ST6op-0003pS-RP; Sat, 12 May 2012 07:32:48 +0000
-From: buildd on hildegard <buildd at hildegard.debian.org>
-To: logs at buildd.debian.org,buildd-porters at hildegard.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on armhf (dist=sid)
+ CN=hummel.debian.org, EMAIL=hostmaster at hummel.debian.org (verified)
+ by merikanto.debian.org with esmtps
+ (TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16) (Exim 4.72)
+ (envelope-from <buildd at hummel.debian.org>) id 1Shw2E-0001aP-AC
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:03:54 +0000
+Received: from buildd by hummel.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at hummel.debian.org>)
+ id 1Shw2B-00019I-4N; Fri, 22 Jun 2012 05:03:51 +0000
+From: buildd on hummel <buildd at hummel.debian.org>
+To: logs at buildd.debian.org,buildd-porters at hummel.debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on armhf (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
-Message-Id: <E1ST6op-0003pS-RP at hildegard.debian.org>
-Date: Sat, 12 May 2012 07:32:47 +0000
+Message-Id: <E1Shw2B-00019I-4N at hummel.debian.org>
+Date: Fri, 22 Jun 2012 05:03:51 +0000
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hildegard.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hummel.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (armhf) 12 May 2012 07:27 ║
+║ tabix 0.2.6-1 (armhf) 22 Jun 2012 04:58 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: armhf
-Get:1 http://ftp.uk.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6282 kB]
+Get:1 http://ftp.uk.debian.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:7 http://ftp.uk.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.uk.debian.org unstable/non-free Sources [96.6 kB]
-Get:9 http://ftp.uk.debian.org unstable/main armhf Packages [5778 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:12 http://incoming.debian.org unstable/main armhf Packages [5778 kB]
-Get:13 http://ftp.uk.debian.org unstable/contrib armhf Packages [36.0 kB]
-Get:14 http://ftp.uk.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:15 http://ftp.uk.debian.org unstable/main Translation-en [3953 kB]
-Get:16 http://incoming.debian.org unstable/contrib armhf Packages [36.0 kB]
-Get:17 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:18 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:19 http://incoming.debian.org Sources [43.6 kB]
-Get:20 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 1min 51s (303 kB/s)
+Get:5 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [55.2 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [97.5 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armhf Packages [5904 kB]
+Get:9 http://ftp.uk.debian.org unstable/contrib armhf Packages [36.4 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:12 http://incoming.debian.org unstable/main armhf Packages [5904 kB]
+Get:13 http://incoming.debian.org unstable/contrib armhf Packages [36.4 kB]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 26.2 MB in 1min 28s (297 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -82,11 +75,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (101 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (80.8 kB/s)
Download complete and in download only mode
Check arch
@@ -106,12 +99,12 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 77 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 77 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -126,7 +119,7 @@ g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -136,7 +129,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -148,109 +141,116 @@ The following NEW packages will be installed:
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
zlib1g-dev
-0 upgraded, 21 newly installed, 0 to remove and 19 not upgraded.
-Need to get 9402 kB of archives.
-After this operation, 23.0 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.1-1 [33.2 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-7 [26.0 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.11-1 [247 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.30-5 [240 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.7.8.dfsg-9 [779 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.32.2-1 [1895 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.5-1 [134 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-7 [121 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.1 [203 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-7 [1027 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.1-2 [1012 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.11-1 [52.8 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-7 [131 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-7 [1826 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.7.dfsg-1 [206 kB]
+The following packages will be upgraded:
+ zlib1g
+1 upgraded, 21 newly installed, 0 to remove and 76 not upgraded.
+Need to get 9508 kB of archives.
+After this operation, 23.1 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main zlib1g armhf 1:1.2.7.dfsg-12 [83.8 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.1-1 [33.2 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.11-1 [247 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.30-5 [240 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.8.0+dfsg1-4 [786 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.32.3-1 [1896 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.5-1 [134 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-9 [122 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.3 [204 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-7 [1027 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.2-1 [1014 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.11-1 [52.8 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-9 [130 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-9 [1828 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.7.dfsg-12 [207 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9402 kB in 2s (3235 kB/s)
+Fetched 9508 kB in 5s (1729 kB/s)
+(Reading database ... 10770 files and directories currently installed.)
+Preparing to replace zlib1g:armhf 1:1.2.7.dfsg-1 (using .../zlib1g_1%3a1.2.7.dfsg-12_armhf.deb) ...
+Unpacking replacement zlib1g:armhf ...
+Setting up zlib1g:armhf (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 10770 files and directories currently installed.)
Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.1-1_armhf.deb) ...
Selecting previously unselected package libasprintf0c2:armhf.
-Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-7_armhf.deb) ...
+Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package libmagic1:armhf.
Unpacking libmagic1:armhf (from .../libmagic1_5.11-1_armhf.deb) ...
Selecting previously unselected package libpcre3:armhf.
Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.30-5_armhf.deb) ...
Selecting previously unselected package libxml2:armhf.
-Unpacking libxml2:armhf (from .../libxml2_2.7.8.dfsg-9_armhf.deb) ...
+Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-4_armhf.deb) ...
Selecting previously unselected package libffi5:armhf.
Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
Selecting previously unselected package libglib2.0-0:armhf.
-Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.2-1_armhf.deb) ...
+Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.32.3-1_armhf.deb) ...
Selecting previously unselected package libcroco3:armhf.
Unpacking libcroco3:armhf (from .../libcroco3_0.6.5-1_armhf.deb) ...
Selecting previously unselected package libunistring0:armhf.
Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
Selecting previously unselected package libgettextpo0:armhf.
-Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-7_armhf.deb) ...
+Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_armhf.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_armhf.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_armhf.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_armhf.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_armhf.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_armhf.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_armhf.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_armhf.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:armhf.
-Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_armhf.deb) ...
+Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_armhf.deb) ...
Setting up libpipeline1:armhf (1.2.1-1) ...
-Setting up libasprintf0c2:armhf (0.18.1.1-7) ...
+Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
Setting up libmagic1:armhf (5.11-1) ...
Setting up libpcre3:armhf (1:8.30-5) ...
-Setting up libxml2:armhf (2.7.8.dfsg-9) ...
+Setting up libxml2:armhf (2.8.0+dfsg1-4) ...
Setting up libffi5:armhf (3.0.10-3+b1) ...
-Setting up libglib2.0-0:armhf (2.32.2-1) ...
+Setting up libglib2.0-0:armhf (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.5-1) ...
Setting up libunistring0:armhf (0.9.3-5+b1) ...
-Setting up libgettextpo0:armhf (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:armhf (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 19 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 76 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 3.2.0-2-mx5 armhf (armv7l)
Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1+b1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-5 g++-4.6_4.6.3-5 gcc_4:4.6.3-5 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-7 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.2 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-7 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1 libgomp1_4.7.0-7 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.16-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.3 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1+b1 debhelper_9.20120608 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-5 g++-4.6_4.6.3-5 gcc_4:4.6.3-5 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-7 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.2 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-7 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1 libgomp1_4.7.0-7 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.16-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -261,15 +261,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -279,46 +277,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -358,9 +356,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-armhf-GF6jqg/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-armhf-lBIfa_/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -370,59 +368,56 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_armhf.deb'.
- dpkg-genchanges -B -marmhf Build Daemon (hildegard) <buildd_armhf-hildegard at buildd.debian.org> >../tabix_0.2.5-3_armhf.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (hummel) <buildd_armhf-hummel at buildd.debian.org> >../tabix_0.2.6-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0732
+Build finished at 20120622-0503
-tabix_0.2.5-3_armhf.changes:
+tabix_0.2.6-1_armhf.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: armhf
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: armhf Build Daemon (hildegard) <buildd_armhf-hildegard at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: armhf Build Daemon (hummel) <buildd_armhf-hummel at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 18b46efca3353519cdeb97ffb8501f3052e3b115 54354 tabix_0.2.5-3_armhf.deb
+ 2e9e4190b8cf3d035bd51e39ec0507b4d42ae49f 54688 tabix_0.2.6-1_armhf.deb
Checksums-Sha256:
- 43a4c3dbe79233eaf86ae1e92e1d38358d2db793dc1d0bbd63f63fd0c29aac36 54354 tabix_0.2.5-3_armhf.deb
+ 0a23fc6e3a5613f1b4d9b3ec74488475d148e0e79d19f45168e30efbd7a94e71 54688 tabix_0.2.6-1_armhf.deb
Files:
- bdf59c3131cab96f9a8ee8c466e3f437 54354 science optional tabix_0.2.5-3_armhf.deb
+ 565a1dcff8b378e5114a88ed9bea88ba 54688 science optional tabix_0.2.6-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_armhf.deb
+tabix_0.2.6-1_armhf.deb
───────────────────────
new debian package, version 2.0.
- size 54354 bytes: control archive=995 bytes.
+ size 54688 bytes: control archive=995 bytes.
784 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 123
@@ -438,26 +433,26 @@ tabix_0.2.5-3_armhf.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:32 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/bin/
--rwxr-xr-x root/root 46956 2012-05-12 07:32 ./usr/bin/tabix
--rwxr-xr-x root/root 22200 2012-05-12 07:32 ./usr/bin/bgzip
-lrwxrwxrwx root/root 0 2012-05-12 07:32 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/bin/
+-rwxr-xr-x root/root 46960 2012-06-22 05:03 ./usr/bin/tabix
+-rwxr-xr-x root/root 22208 2012-06-22 05:03 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:03 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2012-06-22 05:03 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -471,7 +466,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-armhf-sbuild-b8704d60-33a1-4f6e-8741-d066edc8b969/build/buildd-tabix_0.2.5-3-armhf-GF6jqg
+Purging /var/lib/schroot/mount/sid-armhf-sbuild-b6fffdcc-dc35-4f0c-a083-46277a3a714d/build/buildd-tabix_0.2.6-1-armhf-lBIfa_
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -479,19 +474,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: armhf
-Build-Space: 1416
-Build-Time: 73
+Build-Space: 1376
+Build-Time: 72
Distribution: sid
-Install-Time: 90
-Job: tabix_0.2.5-3
+Install-Time: 99
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 309
-Source-Version: 0.2.5-3
-Space: 1416
+Package-Time: 292
+Source-Version: 0.2.6-1
+Space: 1376
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0732
-Build needed 00:05:09, 1416k disc space
-Signature with key '0E1957C5' requested:
+Finished at 20120622-0503
+Build needed 00:04:52, 1376k disc space
+Signature with key '630B2C7A' requested:
diff --git a/hurd-i386.log b/hurd-i386.log
index 667e7af..6cbe797 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,61 +1,131 @@
-From buildd at bach.debian.net Sat May 12 07:37:49 2012
-Return-path: <buildd at bach.debian.net>
-Received: from callisto.debian.net ([80.87.129.151])
+From buildd at rossini.debian.net Fri Jun 22 05:51:06 2012
+Return-path: <buildd at rossini.debian.net>
+Received: from io.ethz.ch ([129.132.80.17] helo=io.debian.net)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at bach.debian.net>)
- id 1ST6th-000348-71
- for logs at buildd.debian.org; Sat, 12 May 2012 07:37:49 +0000
-Received: from bach.debian.net ([10.3.0.1])
- by callisto.debian.net with esmtp (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1ST6tf-0006nL-ES; Sat, 12 May 2012 08:37:47 +0100
-Received: from buildd by bach.debian.net with local (Exim 4.72)
- (envelope-from <buildd at bach.debian.net>)
- id 1ST6tn-0000am-Tj; Sat, 12 May 2012 07:37:55 +0000
-Message-Id: <E1ST6tn-0000am-Tj at bach.debian.net>
+ (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
+ id 1Shwlu-0002lL-Mm
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:51:06 +0000
+Received: from hurd.ethz.ch ([192.33.98.55] helo=rossini.debian.net)
+ by io.debian.net with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at rossini.debian.net>)
+ id 1Shwlr-0005yS-34; Fri, 22 Jun 2012 07:51:03 +0200
+Received: from buildd by rossini.debian.net with local (Exim 4.72)
+ (envelope-from <buildd at rossini.debian.net>)
+ id 1Shwm7-0003ZH-Ex; Fri, 22 Jun 2012 05:51:19 +0000
+Message-Id: <E1Shwm7-0003ZH-Ex at rossini.debian.net>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.78; A2.07; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:37:55 +0000
-From: Build Daemon <buildd at bach.debian.net>
-To: samuel.thibault at ens-lyon.org,mbanck at gmx.net,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on hurd-i386 (dist=sid)
+X-Mailer: MIME::Lite 3.027 (F2.78; B3.08; Q3.08)
+Date: Fri, 22 Jun 2012 05:51:18 +0000
+From: Build Daemon <buildd at rossini.debian.net>
+To: samuel.thibault at ens-lyon.org, mbanck at gmx.net, logs at buildd.debian-ports.org,
+ logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on hurd-i386 (dist=sid)
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on bach.debian.net
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on rossini.debian.net
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (hurd-i386) 12 mai 2012 07:29 ║
+║ tabix 0.2.6-1 (hurd-i386) 22 Jun 2012 05:44 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: hurd-i386
+W: Stripped single quote from command for security:
+ use strict;
+ use warnings;
+ use POSIX;
+ use FileHandle;
+
+ my $lockfile="/var/lib/sbuild/chroot-lock";
+ my $try = 0;
+
+ repeat:
+ if (!sysopen( F, $lockfile, O_WRONLY|O_CREAT|O_TRUNC|O_EXCL, 0644 )){
+ if ($! == EEXIST) {
+ # lock file exists, wait
+ goto repeat if !open( F, "<$lockfile" );
+ my $line = <F>;
+ my ($job, $pid, $user);
+ close( F );
+ if ($line !~ /^(\S+)\s+(\S+)\s+(\S+)/) {
+ print STDERR "Bad lock file contents ($lockfile) -- still trying\n";
+ } else {
+ ($job, $pid, $user) = ($1, $2, $3);
+ if (kill( 0, $pid ) == 0 && $! == ESRCH) {
+ # process doesn't exist anymore, remove stale lock
+ print STDERR "Removing stale lock file $lockfile ".
+ "(job $job, pid $pid, user $user)\n";
+ if (!unlink($lockfile)) {
+ if ($! != ENOENT) {
+ print STDERR "Cannot remove chroot lock file $lockfile: $!\n";
+ exit 1;
+ }
+ }
+ }
+ }
+ ++$try;
+ if ($try > 120) {
+ print STDERR "Lockfile $lockfile still present after " .
+ 120 * 5 . " seconds -- giving up\n";
+ exit 1;
+ }
+ print STDERR "Another sbuild process (job $job, pid $pid by user $user) is currently using the build chroot; waiting...\n"
+ if $try == 1;
+ sleep 5;
+ goto repeat;
+ } else {
+ print STDERR "Can't create lock file $lockfile: $!\n";
+ exit 1;
+ }
+ }
+
+ F->print("tabix_0.2.6-1 12765 buildd\n");
+ F->close();
+
+ exit 0;
+
Ign file: ./ InRelease
Ign file: ./ Release.gpg
Ign file: ./ Release
Ign file: ./ Translation-en
-Ign file: ./ Translation-fr
-Hit http://ftp.fr.debian.org sid InRelease
+Hit http://ftp.ch.debian.org unstable InRelease
+Hit http://ftp.ch.debian.org experimental InRelease
+Hit http://ftp.fr.debian.org unstable InRelease
+Hit http://ftp.fr.debian.org experimental InRelease
+Ign http://incoming.debian.org InRelease
Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org Release.gpg
-Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org Release
-Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
-Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
-Ign http://ftp.fr.debian.org sid/contrib TranslationIndex
-Hit http://ftp.fr.debian.org sid/main TranslationIndex
-Hit http://ftp.fr.debian.org sid/contrib Translation-en
-Hit http://ftp.fr.debian.org sid/main Translation-en
-Hit http://ftp.fr.debian.org sid/main Translation-fr
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.ch.debian.org unstable/main Sources/DiffIndex
+Get:2 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.ch.debian.org unstable/contrib Sources/DiffIndex
+Hit http://ftp.ch.debian.org unstable/non-free Sources/DiffIndex
+Hit http://ftp.ch.debian.org unstable/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.ch.debian.org unstable/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.ch.debian.org unstable/contrib Translation-en/DiffIndex
+Hit http://ftp.ch.debian.org unstable/main Translation-en/DiffIndex
+Get:3 http://incoming.debian.org Release [1601 B]
+Hit http://ftp.ch.debian.org experimental/main Sources/DiffIndex
+Hit http://ftp.ch.debian.org experimental/contrib Sources/DiffIndex
+Hit http://ftp.ch.debian.org experimental/non-free Sources/DiffIndex
+Hit http://ftp.fr.debian.org unstable/main Sources/DiffIndex
+Get:4 http://incoming.debian.org Release [1623 B]
+Hit http://ftp.fr.debian.org unstable/contrib Sources/DiffIndex
+Hit http://ftp.fr.debian.org unstable/non-free Sources/DiffIndex
+Get:5 http://incoming.debian.org Sources [65.4 kB]
+Hit http://ftp.fr.debian.org unstable/main hurd-i386 Packages/DiffIndex
+Hit http://ftp.fr.debian.org unstable/contrib hurd-i386 Packages/DiffIndex
+Hit http://ftp.fr.debian.org unstable/contrib Translation-en/DiffIndex
+Get:6 http://ftp.fr.debian.org unstable/main Translation-en/DiffIndex [7876 B]
+Hit http://ftp.fr.debian.org experimental/main Sources/DiffIndex
+Hit http://ftp.fr.debian.org experimental/contrib Sources/DiffIndex
+Hit http://ftp.fr.debian.org experimental/non-free Sources/DiffIndex
+Get:7 http://incoming.debian.org Packages [844 kB]
Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://ftp.fr.debian.org sid/contrib Translation-fr
Ign http://incoming.debian.org Translation-en
-Ign http://incoming.debian.org Translation-fr
+Fetched 922 kB in 2min 3s (7462 B/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,11 +146,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (91.5 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 1s (60.5 kB/s)
Download complete and in download only mode
Check arch
@@ -93,68 +163,27 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
-build-essential: missing
-fakeroot: already installed (1.18.2-1)
+build-essential: already installed (11.5+b1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
-Installing positive dependencies: build-essential
+Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
-The following extra packages will be installed:
- cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 libstdc++6-4.7-dev
-Suggested packages:
- cpp-doc gcc-4.7-locales gcc-4.7-doc libstdc++6-4.7-dbg gcc-multilib
- manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc
- libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libquadmath0-dbg
- libmudflap0-dbg libstdc++6-4.7-doc
-The following NEW packages will be installed:
- build-essential cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 libstdc++6-4.7-dev
-0 upgraded, 8 newly installed, 0 to remove and 88 not upgraded.
-Need to get 0 B/17.9 MB of archives.
-After this operation, 49.0 MB of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
- cpp-4.7 cpp gcc-4.7 gcc libstdc++6-4.7-dev g++-4.7 g++ build-essential
-Authentication warning overridden.
-Selecting previously unselected package cpp-4.7.
-(Reading database ... 16715 files and directories currently installed.)
-Unpacking cpp-4.7 (from .../cpp-4.7_4.7.0-8_hurd-i386.deb) ...
-Selecting previously unselected package cpp.
-Unpacking cpp (from .../cpp_4%3a4.7.0-6_hurd-i386.deb) ...
-Selecting previously unselected package gcc-4.7.
-Unpacking gcc-4.7 (from .../gcc-4.7_4.7.0-8_hurd-i386.deb) ...
-Selecting previously unselected package gcc.
-Unpacking gcc (from .../gcc_4%3a4.7.0-6_hurd-i386.deb) ...
-Selecting previously unselected package libstdc++6-4.7-dev.
-Unpacking libstdc++6-4.7-dev (from .../libstdc++6-4.7-dev_4.7.0-8_hurd-i386.deb) ...
-Selecting previously unselected package g++-4.7.
-Unpacking g++-4.7 (from .../g++-4.7_4.7.0-8_hurd-i386.deb) ...
-Selecting previously unselected package g++.
-Unpacking g++ (from .../g++_4%3a4.7.0-6_hurd-i386.deb) ...
-Selecting previously unselected package build-essential.
-Unpacking build-essential (from .../build-essential_11.5+b1_hurd-i386.deb) ...
-Processing triggers for man-db ...
-Setting up cpp-4.7 (4.7.0-8) ...
-Setting up cpp (4:4.7.0-6) ...
-Setting up gcc-4.7 (4.7.0-8) ...
-Setting up gcc (4:4.7.0-6) ...
-Setting up libstdc++6-4.7-dev (4.7.0-8) ...
-Setting up g++-4.7 (4.7.0-8) ...
-Setting up g++ (4:4.7.0-6) ...
-update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode.
-Setting up build-essential (11.5+b1) ...
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 88 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -163,119 +192,135 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.4)
-base-passwd: already installed (3.5.22)
-bash: already installed (4.2-2)
-coreutils: already installed (8.5-1)
-dash: already installed (0.5.5.1-7.4)
-debianutils: already installed (4.0.2)
-diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42.2-1)
-findutils: already installed (4.4.2-1+b1)
-grep: already installed (2.9-1)
-gzip: already installed (1.3.12-9)
-hostname: already installed (3.06)
-hurd: already installed (20120408-3)
-ncurses-base: already installed (5.9-1)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-sysvinit-utils: already installed (2.88dsf-13.10)
-sysvinit: already installed (2.88dsf-13.10)
-tar: already installed (1.25-2)
-bsdutils: already installed (1:2.16.2-0)
-util-linux: already installed (2.16.2-0)
-libc0.3-dev: already installed (2.13-31)
+base-files: already installed (6.11)
+base-passwd: already installed (3.5.24+b1)
+bash: already installed (4.2-2+b1)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3+b1)
+debianutils: already installed (4.3.1)
+diffutils: already installed (1:3.2-6+b1)
+dpkg: already installed (1.16.4.3)
+e2fsprogs: already installed (1.42.4-3)
+findutils: already installed (4.4.2-4+b1)
+grep: already installed (2.12-2)
+gzip: already installed (1.4-5+b1)
+hostname: already installed (3.11+b1)
+hurd: already installed (20120605-2)
+ncurses-base: already installed (5.9-9)
+ncurses-bin: already installed (5.9-9)
+perl-base: already installed (5.14.2-11)
+sed: already installed (4.2.1-10)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
+tar: already installed (1.26-4+b1)
+bsdutils: already installed (1:2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc0.3-dev: already installed (2.13-33+b1)
gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
-hurd-dev: already installed (20120408-3)
+make: already installed (3.81-8.2+b1)
+dpkg-dev: already installed (1.16.4.3 >= 1.13.5 is satisfied)
+hurd-dev: already installed (20120605-2)
debhelper: missing
-Using default version 9.20120509
-zlib1g-dev: already installed (1:1.2.6.dfsg-2)
+Using default version 9.20120608
+zlib1g-dev: missing
Checking for dependency conflicts...
-Installing positive dependencies: debhelper
+Installing positive dependencies: debhelper zlib1g-dev
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
file gettext gettext-base html2text intltool-debian libasprintf0c2 libcroco3
- libexpat1 libgettextpo0 libmagic1 libunistring0 po-debconf
+ libexpat1 libffi5 libgettextpo0 libglib2.0-0 libmagic1 libunistring0 libxml2
+ po-debconf
Suggested packages:
dh-make gettext-doc libmail-box-perl
Recommended packages:
- curl wget lynx-cur autopoint libmail-sendmail-perl
+ autopoint libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
debhelper file gettext gettext-base html2text intltool-debian libasprintf0c2
- libcroco3 libexpat1 libgettextpo0 libmagic1 libunistring0 po-debconf
-0 upgraded, 13 newly installed, 0 to remove and 88 not upgraded.
-Need to get 0 B/4267 kB of archives.
-After this operation, 13.9 MB of additional disk space will be used.
+ libcroco3 libexpat1 libffi5 libgettextpo0 libglib2.0-0 libmagic1
+ libunistring0 libxml2 po-debconf zlib1g-dev
+0 upgraded, 17 newly installed, 0 to remove and 10 not upgraded.
+Need to get 0 B/7471 kB of archives.
+After this operation, 20.2 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
- libasprintf0c2 libmagic1 libcroco3 libexpat1 libunistring0 libgettextpo0
- file gettext-base html2text gettext intltool-debian po-debconf debhelper
+ libasprintf0c2 libmagic1 libxml2 libffi5 libglib2.0-0 libcroco3 libexpat1
+ libunistring0 libgettextpo0 file gettext-base html2text gettext
+ intltool-debian po-debconf debhelper zlib1g-dev
Authentication warning overridden.
-Selecting previously unselected package libasprintf0c2.
-(Reading database ... 17559 files and directories currently installed.)
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_hurd-i386.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_hurd-i386.deb) ...
-Selecting previously unselected package libexpat1.
-Unpacking libexpat1 (from .../libexpat1_2.1.0-1+b1_hurd-i386.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_hurd-i386.deb) ...
-Selecting previously unselected package libgettextpo0.
-Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-7_hurd-i386.deb) ...
+Selecting previously unselected package libasprintf0c2:hurd-i386.
+(Reading database ... 14224 files and directories currently installed.)
+Unpacking libasprintf0c2:hurd-i386 (from .../libasprintf0c2_0.18.1.1-9_hurd-i386.deb) ...
+Selecting previously unselected package libmagic1:hurd-i386.
+Unpacking libmagic1:hurd-i386 (from .../libmagic1_5.11-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package libxml2:hurd-i386.
+Unpacking libxml2:hurd-i386 (from .../libxml2_2.8.0+dfsg1-4_hurd-i386.deb) ...
+Selecting previously unselected package libffi5:hurd-i386.
+Unpacking libffi5:hurd-i386 (from .../libffi5_3.0.10-3+b1_hurd-i386.deb) ...
+Selecting previously unselected package libglib2.0-0:hurd-i386.
+Unpacking libglib2.0-0:hurd-i386 (from .../libglib2.0-0_2.32.3-1_hurd-i386.deb) ...
+Selecting previously unselected package libcroco3:hurd-i386.
+Unpacking libcroco3:hurd-i386 (from .../libcroco3_0.6.5-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package libexpat1:hurd-i386.
+Unpacking libexpat1:hurd-i386 (from .../libexpat1_2.1.0-1+b1_hurd-i386.deb) ...
+Selecting previously unselected package libunistring0:hurd-i386.
+Unpacking libunistring0:hurd-i386 (from .../libunistring0_0.9.3-5+b1_hurd-i386.deb) ...
+Selecting previously unselected package libgettextpo0:hurd-i386.
+Unpacking libgettextpo0:hurd-i386 (from .../libgettextpo0_0.18.1.1-9_hurd-i386.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1+b1_hurd-i386.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_hurd-i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_hurd-i386.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b2_hurd-i386.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_hurd-i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_hurd-i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Selecting previously unselected package zlib1g-dev:hurd-i386.
+Unpacking zlib1g-dev:hurd-i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_hurd-i386.deb) ...
Processing triggers for man-db ...
Processing triggers for install-info ...
-Setting up libasprintf0c2 (0.18.1.1-7) ...
-Setting up libmagic1 (5.11-1+b1) ...
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libexpat1 (2.1.0-1+b1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libgettextpo0 (0.18.1.1-7) ...
+Setting up libasprintf0c2:hurd-i386 (0.18.1.1-9) ...
+Setting up libmagic1:hurd-i386 (5.11-1+b1) ...
+Setting up libxml2:hurd-i386 (2.8.0+dfsg1-4) ...
+Setting up libffi5:hurd-i386 (3.0.10-3+b1) ...
+Setting up libglib2.0-0:hurd-i386 (2.32.3-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:hurd-i386 (0.6.5-1+b1) ...
+Setting up libexpat1:hurd-i386 (2.1.0-1+b1) ...
+Setting up libunistring0:hurd-i386 (0.9.3-5+b1) ...
+Setting up libgettextpo0:hurd-i386 (0.18.1.1-9) ...
Setting up file (5.11-1+b1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15+b2) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:hurd-i386 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 88 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.22-6+b1 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-5 g++-4.7_4.7.0-8 gcc-4.4_4.4.7-1 gcc-4.5_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.7_4.7.0-8 gnumach-dev_2:1.3.99.dfsg.git20110609-1 hurd-dev_20120408-3 libc0.3-dev_2.13-31 libstdc++6_4.7.0-8 libstdc++6-4.6-dev_4.6.3-5 libstdc++6-4.7-dev_4.7.0-8
-Package versions: adduser_3.113 apt_0.8.15.10 apt-utils_0.9.0 base-files_6.4 base-passwd_3.5.22 bash_4.2-2 binutils_2.22-6+b1 bsd-mailx_8.1.2-0.20100314cvs-1 bsdmainutils_8.2.3 bsdutils_1:2.16.2-0 build-essential_11.5+b1 bzip2_1.0.6-1+b1 coreutils_8.5-1 cpio_2.11-7 cpp_4:4.7.0-6 cpp-4.4_4.4.7-1 cpp-4.5_4.5.3-12 cpp-4.6_4.6.3-5 cpp-4.7_4.7.0-8 cron_3.0pl1-118 dash_0.5.5.1-7.4 debconf_1.5.40 debfoster_2.6-2 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debian-ports-archive-keyring_2012.01.08 debianutils_4.0.2 diffutils_1:3.0-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 exim4-base_4.76-2+b3 exim4-config_4.76-2 exim4-daemon-light_4.76-2+b3 fakeroot_1.18.2-1 file_5.11-1+b1 findutils_4.4.2-1+b1 g++_4:4.7.0-6 g++-4.6_4.6.3-5 g++-4.7_4.7.0-8 gawk_1:3.1.7.dfsg-5 gcc_4:4.7.0-6 gcc-4.2-base_4.2.4-6+b1 gcc-4.4_4.4.7-1 gcc-4.4-base_4.4.7-1 gcc-4.5_4.5.3-12 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7_4.7.0-8 gcc-4.7-base_4.7.0-8 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnumach-dev_2:1.3.99.dfsg.git20110609-1 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-1 groff-base_1.21-7 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15+b2 hurd_20120408-3 hurd-dev_20120408-3 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 install-info_4.13a.dfsg.1-6 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-inst1.5_0.9.0 libapt-pkg-dev_0.9.0 libapt-pkg4.12_0.9.0 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-7 libblkid1_2.20.1-4 libboost-iostreams1.46.1_1.46.1-8 libboost-iostreams1.48.0_1.48.0-3 libboost-iostreams1.49.0_1.49.0-3 libbz2-1.0_1.0.6-1+b1 libc-bin_2.13-31 libc-dev-bin_2.13-31 libc0.3_2.13-31 libc0.3-dev_2.13-31 libc0.3-xen_2.13-31 libclass-isa-perl_0.36-2 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libcwidget3_0.5.16-3.2 libdb5.1_5.1.29-2 libdpkg-perl_1.16.1.2 libelfg0_0.8.13-3 libept-dev_1.0.6+b1 libept1.4.12_1.0.6+b1 libexpat1_2.1.0-1+b1 libffi5_3.0.10-3 libgcc1_1:4.7.0-8 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libglib2.0-data_2.28.6-1 libgmp10_2:5.0.5+dfsg-1.1 libgnutls26_2.12.19-1 libgomp1_4.7.0-8 libgpg-error0_1.10-3 libldap-2.4-2_2.4.28-1.3 liblocale-gettext-perl_1.05-7+b1 liblockfile-bin_1.09-3 liblockfile1_1.09-3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1+b1 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libncursesw5_5.9-7 libp11-kit0_0.12-3 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-7.1 libparted0debian1_2.3-9.1 libpcre3_1:8.30-5 libpipeline1_1.2.0-5 libpng12-0_1.2.49-1 libpopt0_1.16-4 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libquadmath0_4.7.0-8 libreadline6_6.2-8 libsasl2-2_2.1.25.dfsg1-4+b1 libsasl2-modules_2.1.25.dfsg1-4+b1 libsigc++-2.0-0c2a_2.2.10-0.1 libslang2_2.2.4-9 libss2_1.42-1 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.1b-1 libstdc++6_4.7.0-8 libstdc++6-4.6-dev_4.6.3-5 libstdc++6-4.7-dev_4.7.0-8 libswitch-perl_2.16-2 libsysfs2_2.1.0+repack-1 libtagcoll2-dev_2.0.13-1 libtasn1-3_2.12-1 libtext-iconv-perl_1.7-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libuuid1_2.20.1-4 libwibble-dev_0.1.26-1 libxapian-dev_1.2.8-1 libxapian22_1.2.8-1 libxml2_2.7.8.dfsg-9 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 multiarch-support_2.13-10 ncurses-base_5.9-1 ncurses-bin_5.9-7 netbase_4.46 netcat-traditional_1.10-39 original-awk_2011-05-06-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 pkg-config_0.26-1 po-debconf_1.0.16+nmu2 procps_1:3.2.8-10 readline-common_6.2-2 sed_4.2.1-9 sensible-utils_0.0.6 sgml-base_1.26+nmu1 shared-mime-info_0.90-1 sudo_1.7.2p7-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-2 tzdata_2011h-3 util-linux_2.16.2-0 xml-core_0.13 xz-utils_5.0.0-2 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.7_4.7.1-1 gcc-4.7_4.7.1-1 gnumach-dev_2:1.3.99.dfsg.git20120610-1 hurd-dev_20120605-2 libc0.3-dev_2.13-33+b1 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1
+Package versions: adduser_3.113+nmu3 apt_0.9.7 apt-utils_0.9.6 base-files_6.11 base-passwd_3.5.24+b1 bash_4.2-2+b1 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5+b1 bzip2_1.0.6-3 coreutils_8.13-3.2 cpio_2.11-8 cpp_4:4.7.0-6 cpp-4.7_4.7.1-1 dash_0.5.7-3+b1 debconf_1.5.43 debfoster_2.7-1.1+b1 debhelper_9.20120608 debian-archive-keyring_2012.4 debian-ports-archive-keyring_2012.01.08 debianutils_4.3.1 diffutils_1:3.2-6+b1 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1+b1 findutils_4.4.2-4+b1 g++_4:4.7.0-6 g++-4.7_4.7.1-1 gawk_1:4.0.1+dfsg-2 gcc_4:4.7.0-6 gcc-4.2-base_4.2.4-6+b1 gcc-4.4-base_4.4.7-1+b1 gcc-4.5-base_4.5.3-12+b1 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnumach-dev_2:1.3.99.dfsg.git20120610-1 gnupg_1.4.12-4+b1 gpgv_1.4.12-4+b1 grep_2.12-2 groff-base_1.21-7+b1 gzip_1.4-5+b1 hostname_3.11+b1 html2text_1.3.2a-15+b2 hurd_20120605-2 hurd-dev_20120605-2 initscripts_2.88dsf-27 insserv_1.14.0-3+b1 install-info_4.13a.dfsg.1-10+b1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-inst1.5_0.9.7 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libboost-iostreams1.46.1_1.46.1-8 libboost-iostreams1.48.0_1.48.0-3 libboost-iostreams1.49.0_1.49.0-3 libbz2-1.0_1.0.6-3 libc-bin_2.13-33+b1 libc-dev-bin_2.13-33+b1 libc0.3_2.13-33+b1 libc0.3-dev_2.13-33+b1 libc0.3-xen_2.13-33+b1 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1+b1 libcwidget3_0.5.16-3.3 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1+b1 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-2 libfribidi0_0.19.2-3+b1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3+b1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3+b1 libident_0.22-3+b1 libidn11_1.25-2 libldap-2.4-2_2.4.28-1.3+b2 liblocale-gettext-perl_1.05-7+b2 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1+b1 libmpc2_0.9-4+b1 libmpfr4_3.1.0-5 libncurses5_5.9-9 libncursesw5_5.9-9 libnewt0.52_0.52.14-10 libp11-kit0_0.12-3+b1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libparted0debian1_2.3-9.2 libpciaccess0_0.13.1-2+b1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1+b1 libpng12-0_1.2.49-1+b1 libpopt0_1.16-7 libprocps0_1:3.3.3-2 libquadmath0_4.7.1-1 libreadline6_6.2-8+b1 libsasl2-2_2.1.25.dfsg1-4+b2 libsasl2-modules_2.1.25.dfsg1-4+b2 libsigc++-2.0-0c2a_2.2.10-0.2 libsigsegv2_2.9-4+b1 libslang2_2.2.4-13 libss2_1.42.4-3 libssl0.9.8_0.9.8o-7+b1 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libsysfs2_2.1.0+repack-1.1 libtasn1-3_2.13-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-23 libuuid1_2.20.1-5 libxapian22_1.2.8-1 libxml2_2.8.0+dfsg1-4 lsb-base_4.1+Debian7 make_3.81-8.2+b1 man-db_2.6.1-2+b1 mawk_1.3.3-17+b1 multiarch-support_2.13-33+b1 ncurses-base_5.9-9 ncurses-bin_5.9-9 netbase_5.0 netcat-traditional_1.10-40 netdde_0.0.20120520-2 original-awk_2011-08-10-2 passwd_1:4.1.5.1-1 patch_2.6.1-3+b1 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 procps_1:3.3.3-2 psmisc_22.18-1 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4+b1 tzdata_2012c-1 util-linux_2.20.1-5 wget_1.13.4-3+b1 whiptail_0.52.14-10 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -286,15 +331,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -304,47 +347,47 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture hurd-i386
/usr/bin/fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
dh_clean
- debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
- dh_auto_build
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+ debian/rules build-arch
+dh build-arch
+ dh_testdir -a
+ dh_auto_configure -a
+ dh_auto_build -a
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
- dh_auto_test
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
+ dh_auto_test -a
/usr/bin/fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
@@ -383,74 +426,71 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org> >../tabix_0.2.5-3_hurd-i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_hurd-i386.deb'.
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org> >../tabix_0.2.6-1_hurd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0737
+Build finished at 20120622-0550
-tabix_0.2.5-3_hurd-i386.changes:
+tabix_0.2.6-1_hurd-i386.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: hurd-i386
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-bach at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-rossini at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 31b0d55c11d09f80640d2627fc9810fd523de451 61666 tabix_0.2.5-3_hurd-i386.deb
+ 968d4d5167e56b748f1f605a685f2af491425a10 64110 tabix_0.2.6-1_hurd-i386.deb
Checksums-Sha256:
- ee9d0295fde10ef9a6c3c9c79dd1c3fe274e80ebc24400de74e5fc19e25bb79c 61666 tabix_0.2.5-3_hurd-i386.deb
+ 2aca9ec43d0b51780308449133cac9702ab470b326c608bff651c294516d382d 64110 tabix_0.2.6-1_hurd-i386.deb
Files:
- 649961b52dbb90db5b97843c181f8117 61666 science optional tabix_0.2.5-3_hurd-i386.deb
+ 63f4c0e50362e0c8bb90b11c37821944 64110 science optional tabix_0.2.6-1_hurd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_hurd-i386.deb
+tabix_0.2.6-1_hurd-i386.deb
───────────────────────────
new debian package, version 2.0.
- size 61666 bytes: control archive= 998 bytes.
+ size 64110 bytes: control archive= 997 bytes.
786 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: hurd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 154
+ Installed-Size: 159
Depends: libc0.3 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -463,26 +503,26 @@ tabix_0.2.5-3_hurd-i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/bin/
--rwxr-xr-x root/root 71408 2012-05-12 07:36 ./usr/bin/tabix
--rwxr-xr-x root/root 30288 2012-05-12 07:36 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:36 ./usr/share/man/man1/tabix.1.gz
-lrwxr-xr-x root/root 0 2012-05-12 07:36 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:50 ./
+drwxr-xr-x root/root 0 2012-06-22 05:49 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:50 ./usr/bin/
+-rwxr-xr-x root/root 75508 2012-06-22 05:50 ./usr/bin/tabix
+-rwxr-xr-x root/root 30296 2012-06-22 05:50 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:49 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:49 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:50 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:49 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-06-22 05:49 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:50 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:49 ./usr/share/man/man1/tabix.1.gz
+lrwxr-xr-x root/root 0 2012-06-22 05:50 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -496,34 +536,29 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.5-3-hurd-i386-8OtprR
+Purging /home/buildd/build/chroot-sid/build/buildd-tabix_0.2.6-1-hurd-i386-36U8M0
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 88 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
- libcwidget3 libsigc++-2.0-0c2a libboost-iostreams1.48.0
- libboost-iostreams1.49.0
+ libboost-iostreams1.48.0 libcwidget3 libsigc++-2.0-0c2a libusb-0.1-4
+ libxapian22
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
- build-essential* cpp* cpp-4.7* debhelper* file* g++* g++-4.7* gcc* gcc-4.7*
- gettext* gettext-base* html2text* intltool-debian* libasprintf0c2*
- libcroco3* libexpat1* libgettextpo0* libmagic1* libstdc++6-4.7-dev*
- libunistring0* po-debconf*
-0 upgraded, 0 newly installed, 21 to remove and 88 not upgraded.
-After this operation, 62.8 MB disk space will be freed.
-(Reading database ... 18383 files and directories currently installed.)
-Removing build-essential ...
-Removing g++ ...
-Removing gcc ...
-Removing cpp ...
+ debhelper* file* gettext* gettext-base* html2text* intltool-debian*
+ libasprintf0c2* libcroco3* libexpat1* libffi5* libgettextpo0* libglib2.0-0*
+ libmagic1* libunistring0* libxml2* po-debconf* zlib1g-dev*
+0 upgraded, 0 newly installed, 17 to remove and 10 not upgraded.
+After this operation, 20.2 MB disk space will be freed.
+(Reading database ... 15131 files and directories currently installed.)
Removing debhelper ...
Removing file ...
Removing po-debconf ...
@@ -532,20 +567,23 @@ Removing gettext ...
Removing gettext-base ...
Removing html2text ...
Purging configuration files for html2text ...
-Removing libasprintf0c2 ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libgettextpo0 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing g++-4.7 ...
-Removing libstdc++6-4.7-dev ...
-Removing gcc-4.7 ...
-Removing cpp-4.7 ...
+Removing libasprintf0c2:hurd-i386 ...
+Removing libcroco3:hurd-i386 ...
+Purging configuration files for libcroco3:hurd-i386 ...
+Removing libexpat1:hurd-i386 ...
+Purging configuration files for libexpat1:hurd-i386 ...
+Removing libglib2.0-0:hurd-i386 ...
+Purging configuration files for libglib2.0-0:hurd-i386 ...
+Removing libffi5:hurd-i386 ...
+Purging configuration files for libffi5:hurd-i386 ...
+Removing libgettextpo0:hurd-i386 ...
+Removing libmagic1:hurd-i386 ...
+Purging configuration files for libmagic1:hurd-i386 ...
+Removing libunistring0:hurd-i386 ...
+Purging configuration files for libunistring0:hurd-i386 ...
+Removing libxml2:hurd-i386 ...
+Purging configuration files for libxml2:hurd-i386 ...
+Removing zlib1g-dev:hurd-i386 ...
Processing triggers for man-db ...
Processing triggers for install-info ...
@@ -554,17 +592,17 @@ Processing triggers for install-info ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: hurd-i386
-Build-Space: 1684
-Build-Time: 120
+Build-Space: 1668
+Build-Time: 91
Distribution: sid
-Install-Time: 209
-Job: tabix_0.2.5-3
+Install-Time: 88
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 431
-Source-Version: 0.2.5-3
-Space: 1684
+Package-Time: 344
+Source-Version: 0.2.6-1
+Space: 1668
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0737
-Build needed 00:07:11, 1684k disc space
+Finished at 20120622-0550
+Build needed 00:05:44, 1668k disc space
diff --git a/i386.log b/i386.log
index 65ee555..9ab1d22 100644
--- a/i386.log
+++ b/i386.log
@@ -1,65 +1,61 @@
-From buildd at murphy.debian.org Sat May 12 07:28:37 2012
-Return-path: <buildd at murphy.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at biber.debian.org Fri Jun 22 05:02:48 2012
+Return-path: <buildd at biber.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1ST6kn-0001eP-DG
- for logs at buildd.debian.org; Sat, 12 May 2012 07:28:37 +0000
-Received: from murphy.debian.org ([70.103.162.31])
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1Shw1A-0005TR-Oo
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:02:48 +0000
+Received: from biber.debian.org ([2001:648:2ffc:deb:214:22ff:feb2:1268])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
- id 1ST6kl-0004gY-E9
- for logs at buildd.debian.org; Sat, 12 May 2012 07:28:35 +0000
-Received: from buildd by murphy.debian.org with local (Exim 4.72)
- (envelope-from <buildd at murphy.debian.org>)
- id 1ST6kj-0005Aq-VD; Sat, 12 May 2012 07:28:33 +0000
-Message-Id: <E1ST6kj-0005Aq-VD at murphy.debian.org>
+ CN=biber.debian.org, EMAIL=hostmaster at biber.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at biber.debian.org>)
+ id 1Shw19-0001a6-Lm; Fri, 22 Jun 2012 05:02:47 +0000
+Received: from buildd by biber.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at biber.debian.org>)
+ id 1Shw17-0000Bl-37; Fri, 22 Jun 2012 05:02:45 +0000
+Message-Id: <E1Shw17-0000Bl-37 at biber.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:28:33 +0000
-From: buildd on murphy <buildd at murphy.debian.org>
-To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on i386 (dist=sid)
-Key-Id: 2B54027C
+Date: Fri, 22 Jun 2012 05:02:45 +0000
+From: buildd on biber <buildd at biber.debian.org>
+To: kurt at roeckx.be,logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on i386 (dist=sid)
+Key-Id: 6EBCB100
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on biber.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (i386) 12 May 2012 07:27 ║
+║ tabix 0.2.6-1 (i386) 22 Jun 2012 05:01 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: i386
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://ftp.gr.debian.org unstable InRelease [234 kB]
+Get:2 http://ftp.gr.debian.org unstable/main Sources [6326 kB]
+Get:3 http://incoming.debian.org unstable InRelease [234 kB]
+Get:4 http://ftp.gr.debian.org unstable/contrib Sources [55.2 kB]
+Get:5 http://ftp.gr.debian.org unstable/non-free Sources [97.5 kB]
+Get:6 http://ftp.gr.debian.org unstable/main i386 Packages [6098 kB]
+Get:7 http://ftp.gr.debian.org unstable/contrib i386 Packages [47.1 kB]
Ign http://incoming.debian.org InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/main i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Get:2 http://incoming.debian.org Release [1601 B]
-Get:3 http://incoming.debian.org Sources [43.6 kB]
-Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Get:4 http://incoming.debian.org Packages [767 kB]
-Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.us.debian.org sid/main Translation-en/DiffIndex
-Ign http://incoming.debian.org Translation-en
-Fetched 813 kB in 6s (132 kB/s)
+Get:8 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main i386 Packages [6098 kB]
+Get:12 http://incoming.debian.org unstable/contrib i386 Packages [47.1 kB]
+Get:13 http://incoming.debian.org Release.gpg [836 B]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 26.6 MB in 17s (1484 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -80,11 +76,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (176 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 1s (48.4 kB/s)
Download complete and in download only mode
Check arch
@@ -98,18 +94,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -118,37 +114,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.11)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
+debianutils: already installed (4.3.1)
diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
+dpkg: already installed (1.16.4.3)
+e2fsprogs: already installed (1.42.4-3)
findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-10)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
+ncurses-base: already installed (5.9-9)
+ncurses-bin: already installed (5.9-9)
+perl-base: already installed (5.14.2-11)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-33)
gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.4.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -158,7 +154,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -170,87 +166,116 @@ The following NEW packages will be installed:
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
zlib1g-dev
+The following packages will be upgraded:
+ zlib1g
+1 upgraded, 21 newly installed, 0 to remove and 9 not upgraded.
+Need to get 10.1 MB of archives.
+After this operation, 26.1 MB of additional disk space will be used.
+Get:1 http://ftp.gr.debian.org/debian/ unstable/main zlib1g i386 1:1.2.7.dfsg-12 [91.1 kB]
+Get:2 http://ftp.gr.debian.org/debian/ unstable/main libpipeline1 i386 1.2.1-1 [38.6 kB]
+Get:3 http://ftp.gr.debian.org/debian/ unstable/main libasprintf0c2 i386 0.18.1.1-9 [26.7 kB]
+Get:4 http://ftp.gr.debian.org/debian/ unstable/main libmagic1 i386 5.11-1 [250 kB]
+Get:5 http://ftp.gr.debian.org/debian/ unstable/main libpcre3 i386 1:8.30-5 [240 kB]
+Get:6 http://ftp.gr.debian.org/debian/ unstable/main libxml2 i386 2.8.0+dfsg1-4 [892 kB]
+Get:7 http://ftp.gr.debian.org/debian/ unstable/main libffi5 i386 3.0.10-3 [21.0 kB]
+Get:8 http://ftp.gr.debian.org/debian/ unstable/main libglib2.0-0 i386 2.32.3-1 [2074 kB]
+Get:9 http://ftp.gr.debian.org/debian/ unstable/main libcroco3 i386 0.6.5-1 [151 kB]
+Get:10 http://ftp.gr.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-5 [442 kB]
+Get:11 http://ftp.gr.debian.org/debian/ unstable/main libgettextpo0 i386 0.18.1.1-9 [140 kB]
+Get:12 http://ftp.gr.debian.org/debian/ unstable/main bsdmainutils i386 9.0.3 [205 kB]
+Get:13 http://ftp.gr.debian.org/debian/ unstable/main groff-base i386 1.21-7 [1128 kB]
+Get:14 http://ftp.gr.debian.org/debian/ unstable/main man-db i386 2.6.2-1 [1055 kB]
+Get:15 http://ftp.gr.debian.org/debian/ unstable/main file i386 5.11-1 [52.7 kB]
+Get:16 http://ftp.gr.debian.org/debian/ unstable/main gettext-base i386 0.18.1.1-9 [131 kB]
+Get:17 http://ftp.gr.debian.org/debian/ unstable/main html2text i386 1.3.2a-15 [101 kB]
+Get:18 http://ftp.gr.debian.org/debian/ unstable/main gettext i386 0.18.1.1-9 [1916 kB]
+Get:19 http://ftp.gr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:20 http://ftp.gr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:21 http://ftp.gr.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.gr.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.7.dfsg-12 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 21 newly installed, 0 to remove and 4 not upgraded.
-Need to get 0 B/10.0 MB of archives.
-After this operation, 26.0 MB of additional disk space will be used.
+Fetched 10.1 MB in 1s (7467 kB/s)
+(Reading database ... 10791 files and directories currently installed.)
+Preparing to replace zlib1g:i386 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_i386.deb) ...
+Unpacking replacement zlib1g:i386 ...
+Setting up zlib1g:i386 (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:i386.
-(Reading database ... 10990 files and directories currently installed.)
+(Reading database ... 10791 files and directories currently installed.)
Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.1-1_i386.deb) ...
Selecting previously unselected package libasprintf0c2:i386.
-Unpacking libasprintf0c2:i386 (from .../libasprintf0c2_0.18.1.1-7_i386.deb) ...
+Unpacking libasprintf0c2:i386 (from .../libasprintf0c2_0.18.1.1-9_i386.deb) ...
Selecting previously unselected package libmagic1:i386.
Unpacking libmagic1:i386 (from .../libmagic1_5.11-1_i386.deb) ...
Selecting previously unselected package libpcre3:i386.
Unpacking libpcre3:i386 (from .../libpcre3_1%3a8.30-5_i386.deb) ...
Selecting previously unselected package libxml2:i386.
-Unpacking libxml2:i386 (from .../libxml2_2.7.8.dfsg-9_i386.deb) ...
+Unpacking libxml2:i386 (from .../libxml2_2.8.0+dfsg1-4_i386.deb) ...
Selecting previously unselected package libffi5:i386.
Unpacking libffi5:i386 (from .../libffi5_3.0.10-3_i386.deb) ...
Selecting previously unselected package libglib2.0-0:i386.
-Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.32.2-1_i386.deb) ...
+Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.32.3-1_i386.deb) ...
Selecting previously unselected package libcroco3:i386.
Unpacking libcroco3:i386 (from .../libcroco3_0.6.5-1_i386.deb) ...
Selecting previously unselected package libunistring0:i386.
Unpacking libunistring0:i386 (from .../libunistring0_0.9.3-5_i386.deb) ...
Selecting previously unselected package libgettextpo0:i386.
-Unpacking libgettextpo0:i386 (from .../libgettextpo0_0.18.1.1-7_i386.deb) ...
+Unpacking libgettextpo0:i386 (from .../libgettextpo0_0.18.1.1-9_i386.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_i386.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_i386.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_i386.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_i386.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_i386.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:i386.
-Unpacking zlib1g-dev:i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_i386.deb) ...
+Unpacking zlib1g-dev:i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_i386.deb) ...
Setting up libpipeline1:i386 (1.2.1-1) ...
-Setting up libasprintf0c2:i386 (0.18.1.1-7) ...
+Setting up libasprintf0c2:i386 (0.18.1.1-9) ...
Setting up libmagic1:i386 (5.11-1) ...
Setting up libpcre3:i386 (1:8.30-5) ...
-Setting up libxml2:i386 (2.7.8.dfsg-9) ...
+Setting up libxml2:i386 (2.8.0+dfsg1-4) ...
Setting up libffi5:i386 (3.0.10-3) ...
-Setting up libglib2.0-0:i386 (2.32.2-1) ...
+Setting up libglib2.0-0:i386 (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:i386 (0.6.5-1) ...
Setting up libunistring0:i386 (0.9.3-5) ...
-Setting up libgettextpo0:i386 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:i386 (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:i386 (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:i386 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.7_4.7.0-8 libc6-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.7_4.7.0-8 gawk_1:4.0.1+dfsg-1 gcc_4:4.7.0-6 gcc-4.7_4.7.0-8 gcc-4.7-base_4.7.0-8 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.3 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-7 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-2 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-8 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-8 libitm1_4.7.0-8 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.0-8 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libsigsegv2_2.9-4 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.16-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-10 perl-base_5.14.2-10 perl-modules_5.14.2-10 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Kernel: Linux 2.6.32-5-amd64 i386 (x86_64)
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.7_4.7.1-1 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1
+Package versions: apt_0.9.6 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.6 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libitm1_4.7.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -261,15 +286,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -279,46 +302,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -358,9 +381,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-i386-g_XrMR/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -368,64 +391,62 @@ make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-i386-WngUvJ/tabix-0.2.5'
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../tabix_0.2.5-3_i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_i386.deb'.
+ dpkg-genchanges -B -mi386 Build Daemon <buildd_i386-biber at buildd.debian.org> >../tabix_0.2.6-1_i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0728
+Build finished at 20120622-0502
-tabix_0.2.5-3_i386.changes:
+tabix_0.2.6-1_i386.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: i386
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: i386 Build Daemon <buildd_i386-biber at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 81a272ed0b738452aa13c4bbc01174f250ec8b1e 57276 tabix_0.2.5-3_i386.deb
+ 36ed9679e16480e66e052ae6343bc187d53bdfba 63828 tabix_0.2.6-1_i386.deb
Checksums-Sha256:
- 0500f0486c92b3d98ad444b02f158430bdf553328d1830fcb46a7c70be9cab87 57276 tabix_0.2.5-3_i386.deb
+ eef99f24a8d996a80520f0cbd7a118077afe2b577d5fa3f4b126686e50580040 63828 tabix_0.2.6-1_i386.deb
Files:
- 53bfec634fc246b17de5f9b60a0dba04 57276 science optional tabix_0.2.5-3_i386.deb
+ 4fd2f7d2ef8e113fe0f2c5f5dc0a574f 63828 science optional tabix_0.2.6-1_i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_i386.deb
+tabix_0.2.6-1_i386.deb
──────────────────────
new debian package, version 2.0.
- size 57276 bytes: control archive= 994 bytes.
+ size 63828 bytes: control archive= 995 bytes.
779 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 150
+ Installed-Size: 159
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -438,26 +459,26 @@ tabix_0.2.5-3_i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/bin/
--rwxr-xr-x root/root 26192 2012-05-12 07:28 ./usr/bin/bgzip
--rwxr-xr-x root/root 71408 2012-05-12 07:28 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:28 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/doc/tabix/
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2012-05-12 07:28 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-lrwxrwxrwx root/root 0 2012-05-12 07:28 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/bin/
+-rwxr-xr-x root/root 75508 2012-06-22 05:02 ./usr/bin/tabix
+-rwxr-xr-x root/root 30296 2012-06-22 05:02 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:02 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2012-06-22 05:02 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -471,73 +492,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-i386-sbuild-88d0e2d0-05e2-43a6-8127-72df96738c1f/build/buildd-tabix_0.2.5-3-i386-WngUvJ
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text*
- intltool-debian* libasprintf0c2* libcroco3* libffi5* libgettextpo0*
- libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2*
- man-db* po-debconf* zlib1g-dev*
-0 upgraded, 0 newly installed, 21 to remove and 4 not upgraded.
-After this operation, 26.0 MB disk space will be freed.
-(Reading database ... 12402 files and directories currently installed.)
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:i386 ...
-Removing libcroco3:i386 ...
-Purging configuration files for libcroco3:i386 ...
-Removing libglib2.0-0:i386 ...
-Purging configuration files for libglib2.0-0:i386 ...
-Removing libffi5:i386 ...
-Purging configuration files for libffi5:i386 ...
-Removing libgettextpo0:i386 ...
-Removing libmagic1:i386 ...
-Purging configuration files for libmagic1:i386 ...
-Removing libpcre3:i386 ...
-Purging configuration files for libpcre3:i386 ...
-Removing libpipeline1:i386 ...
-Purging configuration files for libpipeline1:i386 ...
-Removing libunistring0:i386 ...
-Purging configuration files for libunistring0:i386 ...
-Removing libxml2:i386 ...
-Purging configuration files for libxml2:i386 ...
-Removing zlib1g-dev:i386 ...
+Purging /var/lib/schroot/mount/sid-i386-sbuild-013b5993-b3b3-42e4-8080-b8aa0aab2bd2/build/buildd-tabix_0.2.6-1-i386-g_XrMR
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: i386
-Build-Space: 1668
-Build-Time: 13
+Build-Space: 1660
+Build-Time: 12
Distribution: sid
-Install-Time: 11
-Job: tabix_0.2.5-3
+Install-Time: 39
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 37
-Source-Version: 0.2.5-3
-Space: 1668
+Package-Time: 81
+Source-Version: 0.2.6-1
+Space: 1660
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0728
-Build needed 00:00:37, 1668k disc space
-Signature with key '2B54027C' requested:
+Finished at 20120622-0502
+Build needed 00:01:21, 1660k disc space
+Signature with key '6EBCB100' requested:
diff --git a/ia64.log b/ia64.log
index 8012d7b..bd2f625 100644
--- a/ia64.log
+++ b/ia64.log
@@ -1,27 +1,27 @@
-From buildd at mundy.debian.org Sat May 12 07:31:01 2012
+From buildd at mundy.debian.org Fri Jun 22 05:01:14 2012
Return-path: <buildd at mundy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
- id 1ST6n7-00023F-Oe
- for logs at buildd.debian.org; Sat, 12 May 2012 07:31:01 +0000
+ id 1Shvzd-0005IQ-Rs
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:01:14 +0000
Received: from mundy.debian.org ([192.25.206.62])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=mundy.debian.org, EMAIL=hostmaster at mundy.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at mundy.debian.org>)
- id 1ST6n6-0005wK-Fg; Sat, 12 May 2012 07:31:01 +0000
+ id 1Shvzb-00060F-9Q; Fri, 22 Jun 2012 05:01:11 +0000
Received: from buildd by mundy.debian.org with local (Exim 4.72)
(envelope-from <buildd at mundy.debian.org>)
- id 1ST6n3-0000Sq-QW; Sat, 12 May 2012 07:30:57 +0000
-Date: Sat, 12 May 2012 07:30:57 +0000
-Message-Id: <E1ST6n3-0000Sq-QW at mundy.debian.org>
+ id 1ShvzZ-0006I0-0z; Fri, 22 Jun 2012 05:01:09 +0000
+Date: Fri, 22 Jun 2012 05:01:09 +0000
+Message-Id: <E1ShvzZ-0006I0-0z at mundy.debian.org>
From: buildd on mundy <buildd at mundy.debian.org>
To: dannf at master.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on ia64 (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on ia64 (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -29,40 +29,31 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mundy.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (ia64) 12 May 2012 07:28 ║
+║ tabix 0.2.6-1 (ia64) 22 Jun 2012 04:58 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: ia64
-Get:1 http://spohr.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://spohr.debian.org unstable/main Sources [6282 kB]
-Get:4 http://spohr.debian.org unstable/contrib Sources [54.7 kB]
-Get:5 http://spohr.debian.org unstable/non-free Sources [96.6 kB]
-Get:6 http://spohr.debian.org unstable/main ia64 Packages [5705 kB]
+Get:1 http://spohr.debian.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://spohr.debian.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
+Get:4 http://spohr.debian.org unstable/contrib Sources [55.2 kB]
+Get:5 http://spohr.debian.org unstable/non-free Sources [97.5 kB]
+Get:6 http://spohr.debian.org unstable/main ia64 Packages [5797 kB]
Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [37.6 kB]
-Ign http://spohr.debian.org unstable/contrib TranslationIndex
-Get:10 http://spohr.debian.org unstable/main TranslationIndex [2295 B]
-Get:11 http://spohr.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://spohr.debian.org unstable/main Translation-en [3953 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:15 http://incoming.debian.org unstable/main ia64 Packages [5705 kB]
-Get:16 http://incoming.debian.org unstable/contrib ia64 Packages [37.6 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:21 http://incoming.debian.org Sources [43.6 kB]
-Get:22 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.6 MB in 22s (1491 kB/s)
+Get:8 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:9 http://spohr.debian.org unstable/contrib ia64 Packages [38.3 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:12 http://incoming.debian.org unstable/main ia64 Packages [5797 kB]
+Get:13 http://incoming.debian.org unstable/contrib ia64 Packages [38.3 kB]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 26.0 MB in 23s (1091 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +74,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (117 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (105 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +92,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.3-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 64 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 64 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 60 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -121,37 +112,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+bash: already installed (4.2-2)
+coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.1-2)
+debianutils: already installed (4.3)
+diffutils: already installed (1:3.2-6)
+dpkg: already installed (1.16.3)
+e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-9)
+ncurses-base: already installed (5.9-7)
+ncurses-bin: already installed (5.9-7)
+perl-base: already installed (5.14.2-11)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
+login: already installed (1:4.1.5.1-1)
sysvinit-utils: already installed (2.88dsf-22.1)
sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6.1-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6.1-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -174,110 +165,110 @@ The following NEW packages will be installed:
libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 20 newly installed, 0 to remove and 63 not upgraded.
+1 upgraded, 20 newly installed, 0 to remove and 59 not upgraded.
Need to get 11.6 MB of archives.
After this operation, 34.3 MB of additional disk space will be used.
-Get:1 http://spohr.debian.org/debian/ unstable/main zlib1g ia64 1:1.2.7.dfsg-1 [118 kB]
+Get:1 http://spohr.debian.org/debian/ unstable/main zlib1g ia64 1:1.2.7.dfsg-12 [117 kB]
Get:2 http://spohr.debian.org/debian/ unstable/main libpipeline1 ia64 1.2.1-1 [48.2 kB]
-Get:3 http://spohr.debian.org/debian/ unstable/main libasprintf0c2 ia64 0.18.1.1-7 [27.2 kB]
+Get:3 http://spohr.debian.org/debian/ unstable/main libasprintf0c2 ia64 0.18.1.1-9 [27.3 kB]
Get:4 http://spohr.debian.org/debian/ unstable/main libmagic1 ia64 5.11-1 [275 kB]
-Get:5 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.7.8.dfsg-9 [1179 kB]
+Get:5 http://spohr.debian.org/debian/ unstable/main libxml2 ia64 2.8.0+dfsg1-4 [1184 kB]
Get:6 http://spohr.debian.org/debian/ unstable/main libffi5 ia64 3.0.10-3 [35.5 kB]
-Get:7 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.32.2-1 [2433 kB]
+Get:7 http://spohr.debian.org/debian/ unstable/main libglib2.0-0 ia64 2.32.3-1 [2434 kB]
Get:8 http://spohr.debian.org/debian/ unstable/main libcroco3 ia64 0.6.5-1 [175 kB]
Get:9 http://spohr.debian.org/debian/ unstable/main libunistring0 ia64 0.9.3-5 [463 kB]
-Get:10 http://spohr.debian.org/debian/ unstable/main libgettextpo0 ia64 0.18.1.1-7 [205 kB]
-Get:11 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.1 [240 kB]
+Get:10 http://spohr.debian.org/debian/ unstable/main libgettextpo0 ia64 0.18.1.1-9 [206 kB]
+Get:11 http://spohr.debian.org/debian/ unstable/main bsdmainutils ia64 9.0.3 [240 kB]
Get:12 http://spohr.debian.org/debian/ unstable/main groff-base ia64 1.21-7 [1376 kB]
-Get:13 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.1-2 [1156 kB]
+Get:13 http://spohr.debian.org/debian/ unstable/main man-db ia64 2.6.2-1 [1160 kB]
Get:14 http://spohr.debian.org/debian/ unstable/main file ia64 5.11-1 [55.3 kB]
-Get:15 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-7 [172 kB]
+Get:15 http://spohr.debian.org/debian/ unstable/main gettext-base ia64 0.18.1.1-9 [173 kB]
Get:16 http://spohr.debian.org/debian/ unstable/main html2text ia64 1.3.2a-15 [134 kB]
-Get:17 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-7 [2264 kB]
+Get:17 http://spohr.debian.org/debian/ unstable/main gettext ia64 0.18.1.1-9 [2265 kB]
Get:18 http://spohr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:19 http://spohr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:20 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:21 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.7.dfsg-1 [251 kB]
+Get:20 http://spohr.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:21 http://spohr.debian.org/debian/ unstable/main zlib1g-dev ia64 1:1.2.7.dfsg-12 [248 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 11.6 MB in 1s (10.9 MB/s)
-(Reading database ... 10760 files and directories currently installed.)
-Preparing to replace zlib1g:ia64 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_ia64.deb) ...
+Fetched 11.6 MB in 1s (6593 kB/s)
+(Reading database ... 10720 files and directories currently installed.)
+Preparing to replace zlib1g:ia64 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_ia64.deb) ...
Unpacking replacement zlib1g:ia64 ...
-Setting up zlib1g:ia64 (1:1.2.7.dfsg-1) ...
+Setting up zlib1g:ia64 (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:ia64.
-(Reading database ... 10760 files and directories currently installed.)
+(Reading database ... 10720 files and directories currently installed.)
Unpacking libpipeline1:ia64 (from .../libpipeline1_1.2.1-1_ia64.deb) ...
Selecting previously unselected package libasprintf0c2:ia64.
-Unpacking libasprintf0c2:ia64 (from .../libasprintf0c2_0.18.1.1-7_ia64.deb) ...
+Unpacking libasprintf0c2:ia64 (from .../libasprintf0c2_0.18.1.1-9_ia64.deb) ...
Selecting previously unselected package libmagic1:ia64.
Unpacking libmagic1:ia64 (from .../libmagic1_5.11-1_ia64.deb) ...
Selecting previously unselected package libxml2:ia64.
-Unpacking libxml2:ia64 (from .../libxml2_2.7.8.dfsg-9_ia64.deb) ...
+Unpacking libxml2:ia64 (from .../libxml2_2.8.0+dfsg1-4_ia64.deb) ...
Selecting previously unselected package libffi5:ia64.
Unpacking libffi5:ia64 (from .../libffi5_3.0.10-3_ia64.deb) ...
Selecting previously unselected package libglib2.0-0:ia64.
-Unpacking libglib2.0-0:ia64 (from .../libglib2.0-0_2.32.2-1_ia64.deb) ...
+Unpacking libglib2.0-0:ia64 (from .../libglib2.0-0_2.32.3-1_ia64.deb) ...
Selecting previously unselected package libcroco3:ia64.
Unpacking libcroco3:ia64 (from .../libcroco3_0.6.5-1_ia64.deb) ...
Selecting previously unselected package libunistring0:ia64.
Unpacking libunistring0:ia64 (from .../libunistring0_0.9.3-5_ia64.deb) ...
Selecting previously unselected package libgettextpo0:ia64.
-Unpacking libgettextpo0:ia64 (from .../libgettextpo0_0.18.1.1-7_ia64.deb) ...
+Unpacking libgettextpo0:ia64 (from .../libgettextpo0_0.18.1.1-9_ia64.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_ia64.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_ia64.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_ia64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_ia64.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_ia64.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_ia64.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_ia64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_ia64.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_ia64.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_ia64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_ia64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:ia64.
-Unpacking zlib1g-dev:ia64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_ia64.deb) ...
+Unpacking zlib1g-dev:ia64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_ia64.deb) ...
Setting up libpipeline1:ia64 (1.2.1-1) ...
-Setting up libasprintf0c2:ia64 (0.18.1.1-7) ...
+Setting up libasprintf0c2:ia64 (0.18.1.1-9) ...
Setting up libmagic1:ia64 (5.11-1) ...
-Setting up libxml2:ia64 (2.7.8.dfsg-9) ...
+Setting up libxml2:ia64 (2.8.0+dfsg1-4) ...
Setting up libffi5:ia64 (3.0.10-3) ...
-Setting up libglib2.0-0:ia64 (2.32.2-1) ...
+Setting up libglib2.0-0:ia64 (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:ia64 (0.6.5-1) ...
Setting up libunistring0:ia64 (0.9.3-5) ...
-Setting up libgettextpo0:ia64 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:ia64 (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:ia64 (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:ia64 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 63 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6.1-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.12-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6.1_2.13-27 libc6.1-dev_2.13-27 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_8.12-4 libpipeline1_1.2.1-1 libquadmath0_4.6.3-1 libreadline6_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-2 libslang2_2.2.4-7 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.12-1 login_1:4.1.5-1 lsb-base_3.2+Debian31 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu2 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6.1-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6.1_2.13-32 libc6.1-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.0-9 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libunwind7_0.99-0.3 libunwind7-dev_0.99-0.3 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -288,15 +279,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -306,46 +295,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture ia64
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -385,9 +374,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-ia64-BToQaC/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -397,62 +386,59 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../tabix_0.2.5-3_ia64.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_ia64.deb'.
+ dpkg-genchanges -B -mia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org> >../tabix_0.2.6-1_ia64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0730
+Build finished at 20120622-0501
-tabix_0.2.5-3_ia64.changes:
+tabix_0.2.6-1_ia64.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: ia64
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: ia64 Build Daemon (mundy) <buildd_ia64-mundy at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 5756a3d3c618e09bcf8d49e51f2b247bc27b274a 88656 tabix_0.2.5-3_ia64.deb
+ f9a501462c7b00a28c3d5577be01cdd5924f69a7 88950 tabix_0.2.6-1_ia64.deb
Checksums-Sha256:
- dd5034ee2846492838933f8a341ddb2fae2e3e3caa1d76ea674f7616c5a477f6 88656 tabix_0.2.5-3_ia64.deb
+ 4d87cf386513d6ac5e2e7d1dd52fc0faa87c590518517077b2a122024782c87e 88950 tabix_0.2.6-1_ia64.deb
Files:
- 67c9a3683673cc5b6258275efdf52a0f 88656 science optional tabix_0.2.5-3_ia64.deb
+ de8969312f9cab8a77137af76d950907 88950 science optional tabix_0.2.6-1_ia64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_ia64.deb
+tabix_0.2.6-1_ia64.deb
──────────────────────
new debian package, version 2.0.
- size 88656 bytes: control archive= 992 bytes.
+ size 88950 bytes: control archive= 992 bytes.
781 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: ia64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 244
+ Installed-Size: 246
Depends: libc6.1 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -465,26 +451,26 @@ tabix_0.2.5-3_ia64.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:30 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:30 ./usr/bin/
--rwxr-xr-x root/root 51936 2012-05-12 07:30 ./usr/bin/bgzip
--rwxr-xr-x root/root 141784 2012-05-12 07:30 ./usr/bin/tabix
-lrwxrwxrwx root/root 0 2012-05-12 07:30 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:00 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/bin/
+-rwxr-xr-x root/root 52560 2012-06-22 05:00 ./usr/bin/bgzip
+-rwxr-xr-x root/root 143192 2012-06-22 05:00 ./usr/bin/tabix
+lrwxrwxrwx root/root 0 2012-06-22 05:00 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -498,7 +484,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-540e374e-6f55-4314-9a16-8a1c4140fab0/build/buildd-tabix_0.2.5-3-ia64-Q7K_ds
+Purging /var/lib/schroot/mount/sid-ia64-sbuild-443be21d-fe2a-4a4f-88ed-303c73f808f4/build/buildd-tabix_0.2.6-1-ia64-BToQaC
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -506,19 +492,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: ia64
-Build-Space: 2276
-Build-Time: 31
+Build-Space: 2228
+Build-Time: 30
Distribution: sid
-Install-Time: 65
-Job: tabix_0.2.5-3
+Install-Time: 63
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 160
-Source-Version: 0.2.5-3
-Space: 2276
+Package-Time: 144
+Source-Version: 0.2.6-1
+Space: 2228
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0730
-Build needed 00:02:40, 2276k disc space
+Finished at 20120622-0501
+Build needed 00:02:24, 2228k disc space
Signature with key 'A2605B34' requested:
diff --git a/info b/info
index 190db76..e7f42bf 100644
--- a/info
+++ b/info
@@ -1,13 +1,13 @@
-i386~1336807718~sid~successful
-powerpc~1336807840~sid~successful
-ia64~1336807862~sid~successful
-s390x~1336807920~sid~successful
-s390~1336807950~sid~successful
-armhf~1336807971~sid~successful
-sparc~1336807976~sid~successful
-kfreebsd-i386~1336808042~sid~successful
-kfreebsd-amd64~1336808085~sid~successful
-mipsel~1336808144~sid~successful
-hurd-i386~1336808269~sid~successful
-mips~1336813335~sid~successful
-armel~1336814138~sid~successful
+ia64~1340341274~sid~successful
+powerpc~1340341276~sid~successful
+s390~1340341308~sid~successful
+i386~1340341369~sid~successful
+s390x~1340341389~sid~successful
+kfreebsd-i386~1340341414~sid~successful
+armhf~1340341436~sid~successful
+kfreebsd-amd64~1340341559~sid~successful
+sparc~1340341794~sid~successful
+mips~1340342411~sid~successful
+armel~1340342642~sid~successful
+hurd-i386~1340344267~sid~successful
+mipsel~1340344620~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index 3b55b46..3e63a5f 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,4 +1,4 @@
-From buildd at fano.debian.org Sat May 12 07:34:45 2012
+From buildd at fano.debian.org Fri Jun 22 05:05:59 2012
Return-path: <buildd at fano.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,59 +6,56 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1ST6qi-0002Wm-Uz
- for logs at buildd.debian.org; Sat, 12 May 2012 07:34:45 +0000
+ id 1Shw4F-0005nY-1v
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:05:59 +0000
Received: from fano.debian.org ([206.12.19.110])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
- id 1ST6qg-0006Lu-3J; Sat, 12 May 2012 07:34:42 +0000
+ id 1Shw4D-0001hM-9H; Fri, 22 Jun 2012 05:05:57 +0000
Received: from buildd by fano.debian.org with local (Exim 4.72)
(envelope-from <buildd at fano.debian.org>)
- id 1ST6qd-000Lcj-MT; Sat, 12 May 2012 07:34:39 +0000
-Message-Id: <E1ST6qd-000Lcj-MT at fano.debian.org>
+ id 1Shw47-000HQU-T8; Fri, 22 Jun 2012 05:05:51 +0000
+Message-Id: <E1Shw47-000HQU-T8 at fano.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:34:39 +0000
+Date: Fri, 22 Jun 2012 05:05:51 +0000
From: buildd on fano <buildd at fano.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on kfreebsd-amd64 (dist=sid)
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on kfreebsd-amd64 (dist=sid)
Key-Id: 4584BE29
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (kfreebsd-amd64) 12 May 2012 07:33 ║
+║ tabix 0.2.6-1 (kfreebsd-amd64) 22 Jun 2012 05:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: kfreebsd-amd64
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://incoming.debian.org unstable InRelease [234 kB]
+Get:2 http://mirror-ubc.debian.org unstable InRelease [234 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6326 kB]
+Get:4 http://mirror-ubc.debian.org unstable/contrib Sources [55.2 kB]
+Get:5 http://mirror-ubc.debian.org unstable/non-free Sources [97.5 kB]
+Get:6 http://mirror-ubc.debian.org unstable/main kfreebsd-amd64 Packages [5611 kB]
Ign http://incoming.debian.org InRelease
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main kfreebsd-amd64 Packages
-Hit http://incoming.debian.org sid/contrib kfreebsd-amd64 Packages
-Hit http://incoming.debian.org sid/contrib Translation-en
-Hit http://incoming.debian.org sid/main Translation-en
-Get:2 http://incoming.debian.org Release [1601 B]
-Get:3 http://incoming.debian.org Sources [43.6 kB]
-Get:4 http://incoming.debian.org Packages [767 kB]
-Hit http://mirror-ubc.debian.org sid InRelease
-Hit http://mirror-ubc.debian.org sid/main Sources
-Hit http://mirror-ubc.debian.org sid/contrib Sources
-Hit http://mirror-ubc.debian.org sid/main kfreebsd-amd64 Packages
-Hit http://mirror-ubc.debian.org sid/contrib kfreebsd-amd64 Packages
-Hit http://mirror-ubc.debian.org sid/contrib Translation-en
-Hit http://mirror-ubc.debian.org sid/main Translation-en
-Ign http://incoming.debian.org Translation-en
-Fetched 813 kB in 2s (321 kB/s)
+Get:7 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:8 http://mirror-ubc.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main kfreebsd-amd64 Packages [5611 kB]
+Get:12 http://incoming.debian.org unstable/contrib kfreebsd-amd64 Packages [36.7 kB]
+Get:13 http://incoming.debian.org Release.gpg [836 B]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 25.6 MB in 1min 9s (367 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,11 +76,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (104 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (92.9 kB/s)
Download complete and in download only mode
Check arch
@@ -97,7 +94,7 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
@@ -117,37 +114,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.11)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
+debianutils: already installed (4.3.1)
diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
+dpkg: already installed (1.16.4.3)
+e2fsprogs: already installed (1.42.4-3)
findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-4)
-grep: already installed (2.12-1)
-gzip: already installed (1.4-5)
+freebsd-utils: already installed (9.0+ds1-5)
+grep: already installed (2.12-2)
+gzip: already installed (1.5-1.1)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
+ncurses-base: already installed (5.9-9)
+ncurses-bin: already installed (5.9-9)
+perl-base: already installed (5.14.2-12)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
+bsdutils: already installed (1:2.20.1-5)
+util-linux: already installed (2.20.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.4.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -155,92 +152,102 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
+ file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
- libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils debhelper file gettext gettext-base groff-base html2text
- intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
- libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
- zlib1g-dev
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
+ libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
+0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
+Need to get 9661 kB of archives.
+After this operation, 23.8 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-amd64 1.2.1-1 [39.0 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-amd64 0.18.1.1-9 [26.8 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-amd64 5.11-1 [249 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-amd64 2.8.0+dfsg1-4 [913 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 kfreebsd-amd64 3.0.10-3 [23.9 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-amd64 2.32.3-1 [2071 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 kfreebsd-amd64 0.6.5-1 [150 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-amd64 0.9.3-5 [434 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-amd64 0.18.1.1-9 [145 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-amd64 1.21-7 [1113 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-amd64 2.6.2-1 [1052 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-amd64 5.11-1 [53.3 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-amd64 0.18.1.1-9 [153 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-amd64 1.3.2a-15 [104 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-amd64 0.18.1.1-9 [1965 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-amd64 1:1.2.7.dfsg-12 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/10.1 MB of archives.
-After this operation, 24.7 MB of additional disk space will be used.
+Fetched 9661 kB in 1s (5179 kB/s)
Selecting previously unselected package libpipeline1:kfreebsd-amd64.
-(Reading database ... 11477 files and directories currently installed.)
+(Reading database ... 11544 files and directories currently installed.)
Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.1-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libasprintf0c2:kfreebsd-amd64.
-Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-7_kfreebsd-amd64.deb) ...
+Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-9_kfreebsd-amd64.deb) ...
Selecting previously unselected package libmagic1:kfreebsd-amd64.
Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_5.11-1_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libpcre3:kfreebsd-amd64.
-Unpacking libpcre3:kfreebsd-amd64 (from .../libpcre3_1%3a8.30-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package libxml2:kfreebsd-amd64.
-Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.7.8.dfsg-9_kfreebsd-amd64.deb) ...
+Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.8.0+dfsg1-4_kfreebsd-amd64.deb) ...
Selecting previously unselected package libffi5:kfreebsd-amd64.
Unpacking libffi5:kfreebsd-amd64 (from .../libffi5_3.0.10-3_kfreebsd-amd64.deb) ...
Selecting previously unselected package libglib2.0-0:kfreebsd-amd64.
-Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.32.2-1_kfreebsd-amd64.deb) ...
+Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.32.3-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libcroco3:kfreebsd-amd64.
Unpacking libcroco3:kfreebsd-amd64 (from .../libcroco3_0.6.5-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package libunistring0:kfreebsd-amd64.
Unpacking libunistring0:kfreebsd-amd64 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
Selecting previously unselected package libgettextpo0:kfreebsd-amd64.
-Unpacking libgettextpo0:kfreebsd-amd64 (from .../libgettextpo0_0.18.1.1-7_kfreebsd-amd64.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_kfreebsd-amd64.deb) ...
+Unpacking libgettextpo0:kfreebsd-amd64 (from .../libgettextpo0_0.18.1.1-9_kfreebsd-amd64.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_kfreebsd-amd64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_kfreebsd-amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_kfreebsd-amd64.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_kfreebsd-amd64.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_kfreebsd-amd64.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_kfreebsd-amd64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:kfreebsd-amd64.
-Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_kfreebsd-amd64.deb) ...
+Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_kfreebsd-amd64.deb) ...
Setting up libpipeline1:kfreebsd-amd64 (1.2.1-1) ...
-Setting up libasprintf0c2:kfreebsd-amd64 (0.18.1.1-7) ...
+Setting up libasprintf0c2:kfreebsd-amd64 (0.18.1.1-9) ...
Setting up libmagic1:kfreebsd-amd64 (5.11-1) ...
-Setting up libpcre3:kfreebsd-amd64 (1:8.30-5) ...
-Setting up libxml2:kfreebsd-amd64 (2.7.8.dfsg-9) ...
+Setting up libxml2:kfreebsd-amd64 (2.8.0+dfsg1-4) ...
Setting up libffi5:kfreebsd-amd64 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-amd64 (2.32.2-1) ...
+Setting up libglib2.0-0:kfreebsd-amd64 (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:kfreebsd-amd64 (0.6.5-1) ...
Setting up libunistring0:kfreebsd-amd64 (0.9.3-5) ...
-Setting up libgettextpo0:kfreebsd-amd64 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
+Setting up libgettextpo0:kfreebsd-amd64 (0.18.1.1-9) ...
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
@@ -248,8 +255,8 @@ Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.7_4.7.0-8 kfreebsd-kernel-headers_0.79 libc0.1-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8
-Package versions: apt_0.9.3 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 freebsd-utils_9.0+ds1-4 g++_4:4.7.0-6 g++-4.7_4.7.0-8 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6-base_4.6.3-5 gcc-4.7_4.7.0-8 gcc-4.7-base_4.7.0-8 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-4 kfreebsd-kernel-headers_0.79 libacl1_2.2.51-7 libapt-pkg4.12_0.9.3 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-7 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc0.1_2.13-32 libc0.1-dev_2.13-32 libcam6_9.0+ds1-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-2 libdpkg-perl_1.16.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-8 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-2 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-8 libgssglue1_0.4-1 libjail1_9.0+ds1-2 libkiconv4_9.0+ds1-2 libkvm0_9.0+ds1-2 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.0-8 libreadline6_6.2-8 libsbuf6_9.0+ds1-2 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 login_1:4.1.5-1 lsb-base_4.1+Debian3 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.7_4.7.1-1 gcc-4.7_4.7.1-1 kfreebsd-kernel-headers_0.81 libc0.1-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1
+Package versions: apt_0.9.7 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 freebsd-utils_9.0+ds1-5 g++_4:4.7.0-6 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-5 kfreebsd-kernel-headers_0.81 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libblkid1_2.20.1-5 libbsd0_0.4.0-1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc0.1_2.13-33 libc0.1-dev_2.13-33 libcam6_9.0+ds1-3 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgeom1_9.0+ds1-3 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libgssglue1_0.4-2 libjail1_9.0+ds1-3 libkiconv4_9.0+ds1-3 libkvm0_9.0+ds1-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libsbuf6_9.0+ds1-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -260,15 +267,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -278,46 +283,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture kfreebsd-amd64
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -357,9 +362,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -369,59 +374,56 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../tabix_0.2.5-3_kfreebsd-amd64.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../tabix_0.2.6-1_kfreebsd-amd64.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0734
+Build finished at 20120622-0505
-tabix_0.2.5-3_kfreebsd-amd64.changes:
+tabix_0.2.6-1_kfreebsd-amd64.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: kfreebsd-amd64
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- ea7f7020c38b8310cdd623a3c4d8c51806b686c8 59812 tabix_0.2.5-3_kfreebsd-amd64.deb
+ e29690a311a07344cdacd9beb565cd09caabd451 60650 tabix_0.2.6-1_kfreebsd-amd64.deb
Checksums-Sha256:
- 6d504303efe43248882539c8aeb63e3e3b30bb461e5c12561a8f93795d78a916 59812 tabix_0.2.5-3_kfreebsd-amd64.deb
+ ed5b0324492471ffcabe3f5cc884002d47776b099ed0abb7e1956cb2232b5e6b 60650 tabix_0.2.6-1_kfreebsd-amd64.deb
Files:
- 6a29681493ea2ad07d99675ad2d704ee 59812 science optional tabix_0.2.5-3_kfreebsd-amd64.deb
+ 2074189619d4ee6b9084b5847864f1d0 60650 science optional tabix_0.2.6-1_kfreebsd-amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_kfreebsd-amd64.deb
+tabix_0.2.6-1_kfreebsd-amd64.deb
────────────────────────────────
new debian package, version 2.0.
- size 59812 bytes: control archive= 998 bytes.
+ size 60650 bytes: control archive= 1001 bytes.
791 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: kfreebsd-amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 113
@@ -437,26 +439,26 @@ tabix_0.2.5-3_kfreebsd-amd64.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/bin/
--rwxr-xr-x root/root 68280 2012-05-12 07:34 ./usr/bin/tabix
--rwxr-xr-x root/root 27088 2012-05-12 07:34 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:34 ./usr/share/man/man1/tabix.1.gz
-lrwxr-xr-x root/root 0 2012-05-12 07:34 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/bin/
+-rwxr-xr-x root/root 68296 2012-06-22 05:05 ./usr/bin/tabix
+-rwxr-xr-x root/root 27104 2012-06-22 05:05 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:05 ./usr/share/man/man1/tabix.1.gz
+lrwxr-xr-x root/root 0 2012-06-22 05:05 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -470,73 +472,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1336807989-81882/build/buildd-tabix_0.2.5-3-kfreebsd-amd64-yFW6tz
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- bsdmainutils* debhelper* file* gettext* gettext-base* groff-base* html2text*
- intltool-debian* libasprintf0c2* libcroco3* libffi5* libgettextpo0*
- libglib2.0-0* libmagic1* libpcre3* libpipeline1* libunistring0* libxml2*
- man-db* po-debconf* zlib1g-dev*
-0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded.
-After this operation, 24.7 MB disk space will be freed.
-(Reading database ... 12889 files and directories currently installed.)
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:kfreebsd-amd64 ...
-Removing libcroco3:kfreebsd-amd64 ...
-Purging configuration files for libcroco3:kfreebsd-amd64 ...
-Removing libglib2.0-0:kfreebsd-amd64 ...
-Purging configuration files for libglib2.0-0:kfreebsd-amd64 ...
-Removing libffi5:kfreebsd-amd64 ...
-Purging configuration files for libffi5:kfreebsd-amd64 ...
-Removing libgettextpo0:kfreebsd-amd64 ...
-Removing libmagic1:kfreebsd-amd64 ...
-Purging configuration files for libmagic1:kfreebsd-amd64 ...
-Removing libpcre3:kfreebsd-amd64 ...
-Purging configuration files for libpcre3:kfreebsd-amd64 ...
-Removing libpipeline1:kfreebsd-amd64 ...
-Purging configuration files for libpipeline1:kfreebsd-amd64 ...
-Removing libunistring0:kfreebsd-amd64 ...
-Purging configuration files for libunistring0:kfreebsd-amd64 ...
-Removing libxml2:kfreebsd-amd64 ...
-Purging configuration files for libxml2:kfreebsd-amd64 ...
-Removing zlib1g-dev:kfreebsd-amd64 ...
+Purging /var/lib/schroot/mount/sid-ka-sbuild-1340341252-65846/build/buildd-tabix_0.2.6-1-kfreebsd-amd64-fJADn3
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-amd64
-Build-Space: 1924
+Build-Space: 1904
Build-Time: 16
Distribution: sid
-Install-Time: 41
-Job: tabix_0.2.5-3
+Install-Time: 40
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 69
-Source-Version: 0.2.5-3
-Space: 1924
+Package-Time: 297
+Source-Version: 0.2.6-1
+Space: 1904
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0734
-Build needed 00:01:09, 1924k disc space
+Finished at 20120622-0505
+Build needed 00:04:57, 1904k disc space
Signature with key '4584BE29' requested:
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index 1ab765b..bf8f4b2 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,69 +1,61 @@
-From buildd at field.debian.org Sat May 12 07:34:01 2012
-Return-path: <buildd at field.debian.org>
+From buildd at finzi.debian.org Fri Jun 22 05:03:34 2012
+Return-path: <buildd at finzi.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=merikanto.debian.org,
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1ST6q1-0002Tr-Fm
- for logs at buildd.debian.org; Sat, 12 May 2012 07:34:01 +0000
-Received: from field.debian.org ([194.177.211.210])
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1Shw1u-0005WU-7H
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:03:34 +0000
+Received: from finzi.debian.org ([206.12.19.111])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=field.debian.org, EMAIL=hostmaster at field.debian.org (verified)
+ CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at field.debian.org>)
- id 1ST6q0-0006Kk-Kk; Sat, 12 May 2012 07:34:00 +0000
-Received: from buildd by field.debian.org with local (Exim 4.72)
- (envelope-from <buildd at field.debian.org>)
- id 1ST6pz-000MRw-Pb; Sat, 12 May 2012 07:33:59 +0000
-Message-Id: <E1ST6pz-000MRw-Pb at field.debian.org>
+ (Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
+ id 1Shw1s-0001aH-J5; Fri, 22 Jun 2012 05:03:32 +0000
+Received: from buildd by finzi.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at finzi.debian.org>)
+ id 1Shw1q-000G2W-CL; Fri, 22 Jun 2012 05:03:30 +0000
+Message-Id: <E1Shw1q-000G2W-CL at finzi.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:33:59 +0000
-From: buildd on field <buildd at field.debian.org>
-To: logs at buildd.debian.org,aurelien at aurel32.net,christoph at debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on kfreebsd-i386 (dist=sid)
-Key-Id: B2824833
+Date: Fri, 22 Jun 2012 05:03:30 +0000
+From: buildd on finzi <buildd at finzi.debian.org>
+To: logs at buildd.debian.org,christoph at debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on kfreebsd-i386 (dist=sid)
+Key-Id: B3DA9773
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on field.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (kfreebsd-i386) 12 May 2012 07:31 ║
+║ tabix 0.2.6-1 (kfreebsd-i386) 22 Jun 2012 04:59 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: kfreebsd-i386
-Hit http://ftp.gr.debian.org sid InRelease
-Hit http://ftp.gr.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
+Get:1 http://incoming.debian.org unstable InRelease [234 kB]
+Get:2 http://mirror-ubc.debian.org unstable InRelease [234 kB]
Ign http://incoming.debian.org InRelease
-Hit http://ftp.gr.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.gr.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Hit http://ftp.gr.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.gr.debian.org sid/main Translation-en/DiffIndex
-Hit http://ftp.gr.debian.org sid/non-free Translation-en/DiffIndex
-Hit http://incoming.debian.org Release.gpg
-Hit http://incoming.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
-Hit http://incoming.debian.org sid/main kfreebsd-i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib kfreebsd-i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/non-free kfreebsd-i386 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/non-free Translation-en/DiffIndex
-Hit http://incoming.debian.org Release
-Hit http://incoming.debian.org Sources
-Hit http://incoming.debian.org Packages
-Ign http://incoming.debian.org Translation-en
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6326 kB]
+Get:4 http://incoming.debian.org Release.gpg [836 B]
+Get:5 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [55.2 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [97.5 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main kfreebsd-i386 Packages [5606 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib kfreebsd-i386 Packages [36.4 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:12 http://incoming.debian.org unstable/main kfreebsd-i386 Packages [5606 kB]
+Get:13 http://incoming.debian.org unstable/contrib kfreebsd-i386 Packages [36.4 kB]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 25.6 MB in 24s (1034 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +76,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 1s (56.3 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (91.2 kB/s)
Download complete and in download only mode
Check arch
@@ -102,7 +94,7 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
@@ -122,37 +114,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.11)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
+debianutils: already installed (4.3.1)
diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
+dpkg: already installed (1.16.4.3)
+e2fsprogs: already installed (1.42.4-3)
findutils: already installed (4.4.2-4)
-freebsd-utils: already installed (9.0+ds1-4)
-grep: already installed (2.12-1)
-gzip: already installed (1.4-5)
+freebsd-utils: already installed (9.0+ds1-6)
+grep: already installed (2.12-2)
+gzip: already installed (1.5-1.1)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
+ncurses-base: already installed (5.9-9)
+ncurses-bin: already installed (5.9-9)
+perl-base: already installed (5.14.2-12)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-util-linux: already installed (2.20.1-4)
+bsdutils: already installed (1:2.20.1-5)
+util-linux: already installed (2.20.1-5)
libc6-dev: already installed (~*=PROVIDED=*=)
gcc: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
g++: already installed (4:4.7.0-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.4.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -160,82 +152,114 @@ Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
- file gettext gettext-base groff-base html2text intltool-debian
+ bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpipeline1 libunistring0 libxml2 man-db po-debconf
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
- dh-make gettext-doc groff less www-browser libmail-box-perl
+ wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
+ libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
- debhelper file gettext gettext-base groff-base html2text intltool-debian
- libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
+ bsdmainutils debhelper file gettext gettext-base groff-base html2text
+ intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
+ libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ zlib1g-dev
+0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
+Need to get 9950 kB of archives.
+After this operation, 24.2 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-i386 1.2.1-1 [38.4 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-i386 0.18.1.1-9 [26.7 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-i386 5.11-1 [248 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 kfreebsd-i386 1:8.30-5 [241 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-i386 2.8.0+dfsg1-4 [904 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 kfreebsd-i386 3.0.10-3 [20.3 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-i386 2.32.3-1 [2060 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 kfreebsd-i386 0.6.5-1 [151 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-i386 0.9.3-5 [440 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-i386 0.18.1.1-9 [140 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils kfreebsd-i386 9.0.3 [204 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-i386 1.21-7 [1094 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-i386 2.6.2-1 [1038 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-i386 5.11-1 [52.8 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-i386 0.18.1.1-9 [131 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-i386 1.3.2a-15 [101 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-i386 0.18.1.1-9 [1894 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-i386 1:1.2.7.dfsg-12 [213 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/9485 kB of archives.
-After this operation, 23.2 MB of additional disk space will be used.
+Fetched 9950 kB in 3s (2889 kB/s)
Selecting previously unselected package libpipeline1:kfreebsd-i386.
-(Reading database ... 11613 files and directories currently installed.)
+(Reading database ... 11212 files and directories currently installed.)
Unpacking libpipeline1:kfreebsd-i386 (from .../libpipeline1_1.2.1-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libasprintf0c2:kfreebsd-i386.
-Unpacking libasprintf0c2:kfreebsd-i386 (from .../libasprintf0c2_0.18.1.1-7_kfreebsd-i386.deb) ...
+Unpacking libasprintf0c2:kfreebsd-i386 (from .../libasprintf0c2_0.18.1.1-9_kfreebsd-i386.deb) ...
Selecting previously unselected package libmagic1:kfreebsd-i386.
Unpacking libmagic1:kfreebsd-i386 (from .../libmagic1_5.11-1_kfreebsd-i386.deb) ...
+Selecting previously unselected package libpcre3:kfreebsd-i386.
+Unpacking libpcre3:kfreebsd-i386 (from .../libpcre3_1%3a8.30-5_kfreebsd-i386.deb) ...
Selecting previously unselected package libxml2:kfreebsd-i386.
-Unpacking libxml2:kfreebsd-i386 (from .../libxml2_2.7.8.dfsg-9_kfreebsd-i386.deb) ...
+Unpacking libxml2:kfreebsd-i386 (from .../libxml2_2.8.0+dfsg1-4_kfreebsd-i386.deb) ...
Selecting previously unselected package libffi5:kfreebsd-i386.
Unpacking libffi5:kfreebsd-i386 (from .../libffi5_3.0.10-3_kfreebsd-i386.deb) ...
Selecting previously unselected package libglib2.0-0:kfreebsd-i386.
-Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.32.2-1_kfreebsd-i386.deb) ...
+Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.32.3-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libcroco3:kfreebsd-i386.
Unpacking libcroco3:kfreebsd-i386 (from .../libcroco3_0.6.5-1_kfreebsd-i386.deb) ...
Selecting previously unselected package libunistring0:kfreebsd-i386.
Unpacking libunistring0:kfreebsd-i386 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
Selecting previously unselected package libgettextpo0:kfreebsd-i386.
-Unpacking libgettextpo0:kfreebsd-i386 (from .../libgettextpo0_0.18.1.1-7_kfreebsd-i386.deb) ...
+Unpacking libgettextpo0:kfreebsd-i386 (from .../libgettextpo0_0.18.1.1-9_kfreebsd-i386.deb) ...
+Selecting previously unselected package bsdmainutils.
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_kfreebsd-i386.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_kfreebsd-i386.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_kfreebsd-i386.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_kfreebsd-i386.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_kfreebsd-i386.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_kfreebsd-i386.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_kfreebsd-i386.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_kfreebsd-i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:kfreebsd-i386.
-Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_kfreebsd-i386.deb) ...
+Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_kfreebsd-i386.deb) ...
Setting up libpipeline1:kfreebsd-i386 (1.2.1-1) ...
-Setting up libasprintf0c2:kfreebsd-i386 (0.18.1.1-7) ...
+Setting up libasprintf0c2:kfreebsd-i386 (0.18.1.1-9) ...
Setting up libmagic1:kfreebsd-i386 (5.11-1) ...
-Setting up libxml2:kfreebsd-i386 (2.7.8.dfsg-9) ...
+Setting up libpcre3:kfreebsd-i386 (1:8.30-5) ...
+Setting up libxml2:kfreebsd-i386 (2.8.0+dfsg1-4) ...
Setting up libffi5:kfreebsd-i386 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-i386 (2.32.2-1) ...
+Setting up libglib2.0-0:kfreebsd-i386 (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:kfreebsd-i386 (0.6.5-1) ...
Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
-Setting up libgettextpo0:kfreebsd-i386 (0.18.1.1-7) ...
+Setting up libgettextpo0:kfreebsd-i386 (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
@@ -243,8 +267,8 @@ Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.7_4.7.0-8 gcc-4.7_4.7.0-8 kfreebsd-kernel-headers_0.79 libc0.1-dev_2.13-32 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8
-Package versions: apt_0.9.3 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.0-8 dash_0.5.7-3 debconf_1.5.43 debconf-english_1.5.38 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 freebsd-utils_9.0+ds1-4 g++_4:4.7.0-6 g++-4.7_4.7.0-8 gcc_4:4.7.0-6 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6-base_4.6.3-5 gcc-4.7_4.7.0-8 gcc-4.7-base_4.7.0-8 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-4 kfreebsd-kernel-headers_0.79 libacl1_2.2.51-7 libapt-pkg4.12_0.9.3 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-7 libblkid1_2.20.1-4 libbsd0_0.3.0-2 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc0.1_2.13-32 libc0.1-dev_2.13-32 libcam6_9.0+ds1-2 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-2 libdpkg-perl_1.16.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-8 libgdbm3_1.8.3-10 libgeom1_9.0+ds1-2 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-8 libgssglue1_0.4-1 libjail1_9.0+ds1-2 libkiconv4_9.0+ds1-2 libkvm0_9.0+ds1-2 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libncursesw5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpng12-0_1.2.49-1 libprocps0_1:3.3.2-3 libquadmath0_4.7.0-8 libreadline6_6.2-8 libsbuf6_9.0+ds1-2 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-8 libstdc++6-4.7-dev_4.7.0-8 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 login_1:4.1.5-1 lsb-base_4.1+Debian3 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 netbase_4.47 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 procps_1:3.3.2-3 psmisc_22.16-1 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 type-handling_0.2.23 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.7_4.7.1-1 gcc-4.7_4.7.1-1 kfreebsd-kernel-headers_0.81 libc0.1-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1
+Package versions: apt_0.9.7 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debconf-i18n_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 freebsd-utils_9.0+ds1-6 g++_4:4.7.0-6 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 kbdcontrol_9.0+ds1-6 kfreebsd-kernel-headers_0.81 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libblkid1_2.20.1-5 libbsd0_0.4.0-1 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc0.1_2.13-33 libc0.1-dev_2.13-33 libcam6_9.0+ds1-3 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgeom1_9.0+ds1-3 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libgssglue1_0.4-2 libjail1_9.0+ds1-3 libkiconv4_9.0+ds1-3 libkvm0_9.0+ds1-3 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libsbuf6_9.0+ds1-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libtirpc1_0.2.2-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -255,15 +279,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -273,46 +295,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture kfreebsd-i386
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -352,9 +374,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -364,62 +386,59 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org> >../tabix_0.2.5-3_kfreebsd-i386.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../tabix_0.2.6-1_kfreebsd-i386.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0733
+Build finished at 20120622-0503
-tabix_0.2.5-3_kfreebsd-i386.changes:
+tabix_0.2.6-1_kfreebsd-i386.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: kfreebsd-i386
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (field) <buildd_kfreebsd-i386-field at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 5c8841729b232c2aff44b568a0a299df4f8cac2c 61254 tabix_0.2.5-3_kfreebsd-i386.deb
+ 6aed8619bb039d54765fc26ceab27a53b33762b8 63686 tabix_0.2.6-1_kfreebsd-i386.deb
Checksums-Sha256:
- 5db56cbab63d0a5e2c79bc274b57bfaea6f4f123947e86e9e222ed9ab5c24c6e 61254 tabix_0.2.5-3_kfreebsd-i386.deb
+ 3141a5f2b4f737a49520b1edd87bb3e1c96f1103aff4ae5087729ad9a463ad57 63686 tabix_0.2.6-1_kfreebsd-i386.deb
Files:
- d7b3dd754cab707f769b15f59fd20773 61254 science optional tabix_0.2.5-3_kfreebsd-i386.deb
+ da051f08c6d3dfeb797876710b335d82 63686 science optional tabix_0.2.6-1_kfreebsd-i386.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_kfreebsd-i386.deb
+tabix_0.2.6-1_kfreebsd-i386.deb
───────────────────────────────
new debian package, version 2.0.
- size 61254 bytes: control archive= 999 bytes.
+ size 63686 bytes: control archive= 1003 bytes.
790 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: kfreebsd-i386
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 115
+ Installed-Size: 124
Depends: libc0.1 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -432,26 +451,26 @@ tabix_0.2.5-3_kfreebsd-i386.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/bin/
--rwxr-xr-x root/root 71408 2012-05-12 07:33 ./usr/bin/tabix
--rwxr-xr-x root/root 26192 2012-05-12 07:33 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/doc/tabix/
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:33 ./usr/share/man/man1/tabix.1.gz
-lrwxr-xr-x root/root 0 2012-05-12 07:33 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/bin/
+-rwxr-xr-x root/root 75508 2012-06-22 05:03 ./usr/bin/tabix
+-rwxr-xr-x root/root 30296 2012-06-22 05:03 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:03 ./usr/share/man/man1/tabix.1.gz
+lrwxr-xr-x root/root 0 2012-06-22 05:03 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -465,69 +484,26 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1336807871-85002/build/buildd-tabix_0.2.5-3-kfreebsd-i386-XdtEHC
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- debhelper* file* gettext* gettext-base* groff-base* html2text*
- intltool-debian* libasprintf0c2* libcroco3* libffi5* libgettextpo0*
- libglib2.0-0* libmagic1* libpipeline1* libunistring0* libxml2* man-db*
- po-debconf* zlib1g-dev*
-0 upgraded, 0 newly installed, 19 to remove and 0 not upgraded.
-After this operation, 23.2 MB disk space will be freed.
-(Reading database ... 12905 files and directories currently installed.)
-Removing debhelper ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:kfreebsd-i386 ...
-Removing libcroco3:kfreebsd-i386 ...
-Purging configuration files for libcroco3:kfreebsd-i386 ...
-Removing libglib2.0-0:kfreebsd-i386 ...
-Purging configuration files for libglib2.0-0:kfreebsd-i386 ...
-Removing libffi5:kfreebsd-i386 ...
-Purging configuration files for libffi5:kfreebsd-i386 ...
-Removing libgettextpo0:kfreebsd-i386 ...
-Removing libmagic1:kfreebsd-i386 ...
-Purging configuration files for libmagic1:kfreebsd-i386 ...
-Removing libpipeline1:kfreebsd-i386 ...
-Purging configuration files for libpipeline1:kfreebsd-i386 ...
-Removing libunistring0:kfreebsd-i386 ...
-Purging configuration files for libunistring0:kfreebsd-i386 ...
-Removing libxml2:kfreebsd-i386 ...
-Purging configuration files for libxml2:kfreebsd-i386 ...
-Removing zlib1g-dev:kfreebsd-i386 ...
+Purging /var/lib/schroot/mount/sid-ki-sbuild-1340341144-59850/build/buildd-tabix_0.2.6-1-kfreebsd-i386-yFQwP8
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: kfreebsd-i386
-Build-Space: 1518
-Build-Time: 14
+Build-Space: 1526
+Build-Time: 20
Distribution: sid
Install-Time: 83
-Job: tabix_0.2.5-3
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 114
-Source-Version: 0.2.5-3
-Space: 1518
+Package-Time: 261
+Source-Version: 0.2.6-1
+Space: 1526
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0733
-Build needed 00:01:54, 1518k disc space
-Signature with key 'B2824833' requested:
+Finished at 20120622-0503
+Build needed 00:04:21, 1526k disc space
+Signature with key 'B3DA9773' requested:
diff --git a/mips.log b/mips.log
index a8a4d75..2ce022a 100644
--- a/mips.log
+++ b/mips.log
@@ -1,69 +1,61 @@
-From buildd at ball.debian.org Sat May 12 09:02:14 2012
-Return-path: <buildd at ball.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd2 at lucatelli.debian.org Fri Jun 22 05:20:11 2012
+Return-path: <buildd2 at lucatelli.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1ST8DO-0006NO-Id
- for logs at buildd.debian.org; Sat, 12 May 2012 09:02:14 +0000
-Received: from ball.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d09])
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1ShwHy-0007H4-Sa
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:20:11 +0000
+Received: from lucatelli.debian.org ([2607:f8f0:610:4000:2e0:98ff:fe00:4141])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at ball.debian.org>)
- id 1ST8DN-0001au-FB
- for logs at buildd.debian.org; Sat, 12 May 2012 09:02:13 +0000
-Received: from buildd by ball.debian.org with local (Exim 4.72)
- (envelope-from <buildd at ball.debian.org>)
- id 1ST8DM-0005ec-UI; Sat, 12 May 2012 09:02:13 +0000
-Date: Sat, 12 May 2012 09:02:12 +0000
-Message-Id: <E1ST8DM-0005ec-UI at ball.debian.org>
-From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on mips (dist=sid)
+ CN=lucatelli.debian.org,
+ EMAIL=hostmaster at lucatelli.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd2 at lucatelli.debian.org>)
+ id 1ShwHx-0002VC-IY
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:20:09 +0000
+Received: from buildd2 by lucatelli.debian.org with local (Exim 4.72)
+ (envelope-from <buildd2 at lucatelli.debian.org>) id 1Shw6B-0004sK-P1
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:07:59 +0000
+Date: Fri, 22 Jun 2012 05:07:59 +0000
+Message-Id: <E1Shw6B-0004sK-P1 at lucatelli.debian.org>
+From: buildd on lucatelli <buildd2 at lucatelli.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of tabix_0.2.6-1 on mips (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ball.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lucatelli.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (mips) 12 May 2012 08:56 ║
+║ tabix 0.2.6-1 (mips) 22 Jun 2012 05:00 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: mips
-Get:1 http://ftp.de.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6282 kB]
+Get:1 http://mirror-ubc.debian.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6280 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [54.7 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [96.6 kB]
-Get:8 http://ftp.de.debian.org unstable/main mips Packages [5799 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:11 http://incoming.debian.org unstable/main mips Packages [5802 kB]
-Get:12 http://incoming.debian.org unstable/contrib mips Packages [37.5 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:13 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
+Get:5 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:6 http://mirror-ubc.debian.org unstable/contrib Sources [55.2 kB]
+Get:7 http://mirror-ubc.debian.org unstable/non-free Sources [97.5 kB]
+Get:8 http://mirror-ubc.debian.org unstable/main mips Packages [5899 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main mips Packages [5899 kB]
+Get:12 http://mirror-ubc.debian.org unstable/contrib mips Packages [38.1 kB]
+Get:13 http://incoming.debian.org unstable/contrib mips Packages [38.1 kB]
Get:14 http://incoming.debian.org Release [1601 B]
-Get:15 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://incoming.debian.org unstable/main Translation-en [3952 kB]
-Get:17 http://incoming.debian.org Sources [43.1 kB]
-Get:18 http://incoming.debian.org Packages [713 kB]
-Get:19 http://ftp.de.debian.org unstable/contrib mips Packages [37.5 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:20 http://ftp.de.debian.org unstable/main TranslationIndex [2295 B]
-Get:21 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Ign http://incoming.debian.org Translation-en
-Get:22 http://ftp.de.debian.org unstable/main Translation-en [3952 kB]
-Fetched 33.7 MB in 1min 26s (392 kB/s)
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 26.2 MB in 1min 53s (231 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +76,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/debian/ unstable/main tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/debian/ unstable/main tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/debian/ unstable/main tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (105 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (89.0 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +94,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 79 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 79 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -122,37 +114,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
+base-files: already installed (6.10)
base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
+bash: already installed (4.2-2)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3.1)
+diffutils: already installed (1:3.2-6)
+dpkg: already installed (1.16.4.2)
+e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-6)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-18)
-sysvinit: already installed (2.88dsf-18)
+grep: already installed (2.12-2)
+gzip: already installed (1.4-5)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-8)
+ncurses-bin: already installed (5.9-8)
+perl-base: already installed (5.14.2-11)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-24)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-33)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.4.2 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -176,114 +168,114 @@ The following NEW packages will be installed:
zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 78 not upgraded.
-Need to get 9964 kB of archives.
-After this operation, 26.8 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main zlib1g mips 1:1.2.7.dfsg-1 [86.6 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mips 1.2.1-1 [36.7 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-7 [26.6 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mips 5.11-1 [253 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libpcre3 mips 1:8.30-5 [245 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libxml2 mips 2.7.8.dfsg-9 [860 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mips 2.32.2-1 [1988 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mips 0.6.5-1 [140 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-7 [139 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mips 9.0.1 [207 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main groff-base mips 1.21-7 [1154 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main man-db mips 2.6.1-2 [1024 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main file mips 5.11-1 [53.2 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-7 [134 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main gettext mips 0.18.1.1-7 [1919 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.7.dfsg-1 [213 kB]
+1 upgraded, 21 newly installed, 0 to remove and 34 not upgraded.
+Need to get 9997 kB of archives.
+After this operation, 26.9 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g mips 1:1.2.7.dfsg-12 [87.5 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 mips 1.2.1-1 [36.7 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-9 [26.7 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 mips 5.11-1 [253 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 mips 1:8.30-5 [245 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 mips 2.8.0+dfsg1-4 [869 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 mips 2.32.3-1 [1991 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 mips 0.6.5-1 [140 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-9 [139 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils mips 9.0.3 [208 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main groff-base mips 1.21-7 [1154 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main man-db mips 2.6.2-1 [1029 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main file mips 5.11-1 [53.2 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-9 [141 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main gettext mips 0.18.1.1-9 [1918 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.7.dfsg-12 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9964 kB in 3s (2675 kB/s)
-(Reading database ... 10640 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.7.dfsg-1_mips.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.7.dfsg-1) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10640 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mips.deb) ...
-Selecting previously unselected package libasprintf0c2.
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_mips.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mips.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-5_mips.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-9_mips.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_mips.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.2-1_mips.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_mips.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mips.deb) ...
-Selecting previously unselected package libgettextpo0.
-Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-7_mips.deb) ...
+Fetched 9997 kB in 4s (2182 kB/s)
+(Reading database ... 10710 files and directories currently installed.)
+Preparing to replace zlib1g:mips 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_mips.deb) ...
+Unpacking replacement zlib1g:mips ...
+Setting up zlib1g:mips (1:1.2.7.dfsg-12) ...
+Selecting previously unselected package libpipeline1:mips.
+(Reading database ... 10710 files and directories currently installed.)
+Unpacking libpipeline1:mips (from .../libpipeline1_1.2.1-1_mips.deb) ...
+Selecting previously unselected package libasprintf0c2:mips.
+Unpacking libasprintf0c2:mips (from .../libasprintf0c2_0.18.1.1-9_mips.deb) ...
+Selecting previously unselected package libmagic1:mips.
+Unpacking libmagic1:mips (from .../libmagic1_5.11-1_mips.deb) ...
+Selecting previously unselected package libpcre3:mips.
+Unpacking libpcre3:mips (from .../libpcre3_1%3a8.30-5_mips.deb) ...
+Selecting previously unselected package libxml2:mips.
+Unpacking libxml2:mips (from .../libxml2_2.8.0+dfsg1-4_mips.deb) ...
+Selecting previously unselected package libffi5:mips.
+Unpacking libffi5:mips (from .../libffi5_3.0.10-3_mips.deb) ...
+Selecting previously unselected package libglib2.0-0:mips.
+Unpacking libglib2.0-0:mips (from .../libglib2.0-0_2.32.3-1_mips.deb) ...
+Selecting previously unselected package libcroco3:mips.
+Unpacking libcroco3:mips (from .../libcroco3_0.6.5-1_mips.deb) ...
+Selecting previously unselected package libunistring0:mips.
+Unpacking libunistring0:mips (from .../libunistring0_0.9.3-5_mips.deb) ...
+Selecting previously unselected package libgettextpo0:mips.
+Unpacking libgettextpo0:mips (from .../libgettextpo0_0.18.1.1-9_mips.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_mips.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_mips.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_mips.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_mips.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_mips.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_mips.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_mips.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mips.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_mips.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_mips.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_mips.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libasprintf0c2 (0.18.1.1-7) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-5) ...
-Setting up libxml2 (2.7.8.dfsg-9) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.2-1) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Selecting previously unselected package zlib1g-dev:mips.
+Unpacking zlib1g-dev:mips (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_mips.deb) ...
+Setting up libpipeline1:mips (1.2.1-1) ...
+Setting up libasprintf0c2:mips (0.18.1.1-9) ...
+Setting up libmagic1:mips (5.11-1) ...
+Setting up libpcre3:mips (1:8.30-5) ...
+Setting up libxml2:mips (2.8.0+dfsg1-4) ...
+Setting up libffi5:mips (3.0.10-3) ...
+Setting up libglib2.0-0:mips (2.32.3-1) ...
No schema files found: doing nothing.
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libgettextpo0 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libcroco3:mips (0.6.5-1) ...
+Setting up libunistring0:mips (0.9.3-5) ...
+Setting up libgettextpo0:mips (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:mips (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 78 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 34 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mips (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-12 gcc-4.6_4.6.2-12 libc6-dev_2.13-24 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 linux-libc-dev_3.2.1-2
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-12 gcc_4:4.6.2-4 gcc-4.6_4.6.2-12 gcc-4.6-base_4.6.2-12 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-18 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libc-bin_2.13-24 libc-dev-bin_2.13-24 libc6_2.13-24 libc6-dev_2.13-24 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-12 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-12 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-5 libss2_1.42-1 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.1-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-24 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-6 perl-base_5.14.2-6 perl-modules_5.14.2-6 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p1-3 sysv-rc_2.88dsf-18 sysvinit_2.88dsf-18 sysvinit-utils_2.88dsf-18 tar_1.26-4 tzdata_2011n-2 util-linux_2.20.1-1.2 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Kernel: Linux 3.2.0-0.bpo.1-octeon mips (mips64)
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.2 g++-4.6_4.6.3-7 gcc-4.6_4.6.3-7 libc6-dev_2.13-33 libstdc++6_4.7.0-12 libstdc++6-4.6-dev_4.6.3-7 linux-libc-dev_3.2.19-1
+Package versions: apt_0.9.5.1 base-files_6.10 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-7 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.2 dpkg-dev_1.16.4.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-7 gcc_4:4.6.3-6 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7-base_4.7.0-12 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.2 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-12 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.0-12 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-8 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.2-2 libstdc++6_4.7.0-12 libstdc++6-4.6-dev_4.6.3-7 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-8 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.19-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian6 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-8 ncurses-bin_5.9-8 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-26 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -293,16 +285,14 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binu
Unpack source
─────────────
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: keyblock resource `/home/buildd2/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -312,47 +302,47 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture mips
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
dh_clean
- debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
- dh_auto_build
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+ debian/rules build-arch
+dh build-arch
+ dh_testdir -a
+ dh_auto_configure -a
+ dh_auto_build -a
+make[1]: Entering directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
- dh_auto_test
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
+ dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
@@ -391,71 +381,68 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mips-IwEQVB/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd2-tabix_0.2.6-1-mips-dX_h1z/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../tabix_0.2.5-3_mips.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_mips.deb'.
+ dpkg-genchanges -B -mmips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org> >../tabix_0.2.6-1_mips.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0902
+Build finished at 20120622-0507
-tabix_0.2.5-3_mips.changes:
+tabix_0.2.6-1_mips.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: mips
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: mips Build Daemon (lucatelli) <buildd_mips-lucatelli2 at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- d36d564c3c21d5fa84c0901d86c8fa4f4bb775aa 66542 tabix_0.2.5-3_mips.deb
+ 58e6c406e080c2a9f125fdbc9551af6790fc582f 66916 tabix_0.2.6-1_mips.deb
Checksums-Sha256:
- 2935f05cb5c802220c916f23c94923b055e2fe14cc99a37e8415a281defd4cad 66542 tabix_0.2.5-3_mips.deb
+ 5bf9893224f4b146621936d8e3a8b46fa81d5262782a3c7cbb87e0dbdfcacd1d 66916 tabix_0.2.6-1_mips.deb
Files:
- 05bbf6116ba6da4d4330fe57c33f55bc 66542 science optional tabix_0.2.5-3_mips.deb
+ b0cfac73485e92f67ebb9ddb8bb61c6b 66916 science optional tabix_0.2.6-1_mips.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_mips.deb
+tabix_0.2.6-1_mips.deb
──────────────────────
new debian package, version 2.0.
- size 66542 bytes: control archive= 993 bytes.
+ size 66916 bytes: control archive= 997 bytes.
779 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: mips
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 167
@@ -471,26 +458,26 @@ tabix_0.2.5-3_mips.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 09:01 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 09:01 ./usr/bin/
--rwxr-xr-x root/root 31820 2012-05-12 09:01 ./usr/bin/bgzip
--rwxr-xr-x root/root 82816 2012-05-12 09:01 ./usr/bin/tabix
-lrwxrwxrwx root/root 0 2012-05-12 09:01 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:07 ./usr/bin/
+-rwxr-xr-x root/root 31828 2012-06-22 05:07 ./usr/bin/bgzip
+-rwxr-xr-x root/root 82824 2012-06-22 05:07 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:07 ./usr/share/doc/tabix/
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+drwxr-xr-x root/root 0 2012-06-22 05:06 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:07 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:06 ./usr/share/man/man1/tabix.1.gz
+lrwxrwxrwx root/root 0 2012-06-22 05:07 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -504,31 +491,33 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mips-sbuild-9e98c605-4f18-49ab-b710-27364a8c595c/build/buildd-tabix_0.2.5-3-mips-IwEQVB
+Purging /var/lib/schroot/mount/sid-mips-sbuild-96bb355a-7fa4-4b55-8ace-04b113ebd762/build/buildd2-tabix_0.2.6-1-mips-dX_h1z
Not cleaning session: cloned chroot in use
+Can't open average time db /var/lib/sbuild/avg-build-times
+Can't open average space db /var/lib/sbuild/avg-build-space
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mips
-Build-Space: 1636
-Build-Time: 63
+Build-Space: 1600
+Build-Time: 165
Distribution: sid
-Install-Time: 114
-Job: tabix_0.2.5-3
+Install-Time: 85
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 347
-Source-Version: 0.2.5-3
-Space: 1636
+Package-Time: 417
+Source-Version: 0.2.6-1
+Space: 1600
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0902
-Build needed 00:05:47, 1636k disc space
-Signature with key 'E348DA45' requested:
+Finished at 20120622-0507
+Build needed 00:06:57, 1600k disc space
+Signature with key '86ADA8B4' requested:
-From buildd at rem.debian.org Sat May 12 07:35:38 2012
+From buildd at rem.debian.org Fri Jun 22 05:57:00 2012
Return-path: <buildd at rem.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -536,23 +525,23 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1ST6rZ-0002iW-Qt
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:38 +0000
+ id 1Shwrc-0003Zj-5d
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:57:00 +0000
Received: from rem.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d06])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=rem.debian.org, EMAIL=hostmaster at rem.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1ST6rY-0006PI-Sr
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:37 +0000
+ id 1Shwrb-00049C-2v
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:56:59 +0000
Received: from buildd by rem.debian.org with local (Exim 4.72)
- (envelope-from <buildd at rem.debian.org>) id 1ST6rW-0005ad-Ro
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:34 +0000
-Date: Sat, 12 May 2012 07:35:34 +0000
-Message-Id: <E1ST6rW-0005ad-Ro at rem.debian.org>
+ (envelope-from <buildd at rem.debian.org>) id 1Shwra-0002ON-96
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:56:58 +0000
+Date: Fri, 22 Jun 2012 05:56:58 +0000
+Message-Id: <E1Shwra-0002ON-96 at rem.debian.org>
From: buildd on rem <buildd at rem.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on mipsel (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -560,40 +549,31 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on rem.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (mipsel) 12 May 2012 07:31 ║
+║ tabix 0.2.6-1 (mipsel) 22 Jun 2012 05:53 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: mipsel
-Get:1 http://mirror.ayous.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://mirror.ayous.org unstable/main Sources [6282 kB]
+Get:1 http://mirror.ayous.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://mirror.ayous.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://mirror.ayous.org unstable/contrib Sources [54.7 kB]
-Get:5 http://mirror.ayous.org unstable/non-free Sources [96.6 kB]
-Get:6 http://mirror.ayous.org unstable/main mipsel Packages [5818 kB]
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:9 http://mirror.ayous.org unstable/contrib mipsel Packages [37.5 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:10 http://mirror.ayous.org unstable/main TranslationIndex [2295 B]
-Get:11 http://mirror.ayous.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://mirror.ayous.org unstable/main Translation-en [3953 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:15 http://incoming.debian.org unstable/main mipsel Packages [5818 kB]
-Get:16 http://incoming.debian.org unstable/contrib mipsel Packages [37.5 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:21 http://incoming.debian.org Sources [43.6 kB]
-Get:22 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 1min 1s (550 kB/s)
+Get:4 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:5 http://mirror.ayous.org unstable/contrib Sources [55.2 kB]
+Get:6 http://mirror.ayous.org unstable/non-free Sources [97.5 kB]
+Get:7 http://mirror.ayous.org unstable/main mipsel Packages [5908 kB]
+Get:8 http://mirror.ayous.org unstable/contrib mipsel Packages [38.1 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main mipsel Packages [5908 kB]
+Get:12 http://incoming.debian.org unstable/contrib mipsel Packages [38.1 kB]
+Get:13 http://incoming.debian.org Release.gpg [836 B]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [65.4 kB]
+Get:16 http://incoming.debian.org Packages [843 kB]
+Fetched 26.2 MB in 1min 12s (360 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -614,11 +594,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (104 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (79.0 kB/s)
Download complete and in download only mode
Check arch
@@ -632,18 +612,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.3-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 80 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 80 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -652,37 +632,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
+bash: already installed (4.2-2)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3)
+diffutils: already installed (1:3.2-6)
+dpkg: already installed (1.16.3)
+e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
+grep: already installed (2.12-2)
+gzip: already installed (1.4-5)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-7)
+ncurses-bin: already installed (5.9-7)
+perl-base: already installed (5.14.2-11)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-22.1)
+sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -706,114 +686,114 @@ The following NEW packages will be installed:
zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 79 not upgraded.
-Need to get 9911 kB of archives.
-After this operation, 26.8 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main zlib1g mipsel 1:1.2.7.dfsg-1 [87.2 kB]
+1 upgraded, 21 newly installed, 0 to remove and 58 not upgraded.
+Need to get 9932 kB of archives.
+After this operation, 26.9 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main zlib1g mipsel 1:1.2.7.dfsg-12 [87.9 kB]
Get:2 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.1-1 [36.7 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-7 [26.4 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-9 [26.8 kB]
Get:4 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.11-1 [251 kB]
Get:5 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 1:8.30-5 [245 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-9 [860 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-4 [867 kB]
Get:7 http://mirror.ayous.org/debian/ unstable/main libffi5 mipsel 3.0.10-3 [22.8 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.2-1 [1982 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.3-1 [1985 kB]
Get:9 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.5-1 [139 kB]
Get:10 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-7 [139 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.1 [206 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-9 [139 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.3 [207 kB]
Get:13 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-7 [1106 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.1-2 [1026 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.2-1 [1029 kB]
Get:15 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.11-1 [53.0 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-7 [140 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-9 [140 kB]
Get:17 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-7 [1917 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-9 [1918 kB]
Get:19 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:20 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.7.dfsg-1 [215 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.7.dfsg-12 [214 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9911 kB in 1s (8589 kB/s)
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.7.dfsg-1_mipsel.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.7.dfsg-1) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10676 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
-Selecting previously unselected package libasprintf0c2.
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-5_mipsel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-9_mipsel.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_mipsel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.2-1_mipsel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_mipsel.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
-Selecting previously unselected package libgettextpo0.
-Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-7_mipsel.deb) ...
+Fetched 9932 kB in 3s (3115 kB/s)
+(Reading database ... 10751 files and directories currently installed.)
+Preparing to replace zlib1g:mipsel 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_mipsel.deb) ...
+Unpacking replacement zlib1g:mipsel ...
+Setting up zlib1g:mipsel (1:1.2.7.dfsg-12) ...
+Selecting previously unselected package libpipeline1:mipsel.
+(Reading database ... 10751 files and directories currently installed.)
+Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
+Selecting previously unselected package libasprintf0c2:mipsel.
+Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-9_mipsel.deb) ...
+Selecting previously unselected package libmagic1:mipsel.
+Unpacking libmagic1:mipsel (from .../libmagic1_5.11-1_mipsel.deb) ...
+Selecting previously unselected package libpcre3:mipsel.
+Unpacking libpcre3:mipsel (from .../libpcre3_1%3a8.30-5_mipsel.deb) ...
+Selecting previously unselected package libxml2:mipsel.
+Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-4_mipsel.deb) ...
+Selecting previously unselected package libffi5:mipsel.
+Unpacking libffi5:mipsel (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0:mipsel.
+Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.32.3-1_mipsel.deb) ...
+Selecting previously unselected package libcroco3:mipsel.
+Unpacking libcroco3:mipsel (from .../libcroco3_0.6.5-1_mipsel.deb) ...
+Selecting previously unselected package libunistring0:mipsel.
+Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libgettextpo0:mipsel.
+Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_mipsel.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_mipsel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_mipsel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_mipsel.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_mipsel.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1_mipsel.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_mipsel.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_mipsel.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_mipsel.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libasprintf0c2 (0.18.1.1-7) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-5) ...
-Setting up libxml2 (2.7.8.dfsg-9) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.2-1) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Selecting previously unselected package zlib1g-dev:mipsel.
+Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_mipsel.deb) ...
+Setting up libpipeline1:mipsel (1.2.1-1) ...
+Setting up libasprintf0c2:mipsel (0.18.1.1-9) ...
+Setting up libmagic1:mipsel (5.11-1) ...
+Setting up libpcre3:mipsel (1:8.30-5) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-4) ...
+Setting up libffi5:mipsel (3.0.10-3) ...
+Setting up libglib2.0-0:mipsel (2.32.3-1) ...
No schema files found: doing nothing.
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libgettextpo0 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libcroco3:mipsel (0.6.5-1) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:mipsel (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 79 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-12 gcc-4.6_4.6.2-12 libc6-dev_2.13-26 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 linux-libc-dev_3.2.4-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-12 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.6_4.6.2-12 gcc-4.6-base_4.6.2-12 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-12 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.6.2-12 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libss2_1.42-1 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tzdata_2011n-2 ucf_3.0025+nmu2 util-linux_2.20.1-1.2 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-12 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -824,15 +804,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -842,47 +820,47 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_clean
- debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
- dh_auto_build
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+ debian/rules build-arch
+dh build-arch
+ dh_testdir -a
+ dh_auto_configure -a
+ dh_auto_build -a
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
- dh_auto_test
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+ dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
@@ -921,71 +899,68 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../tabix_0.2.5-3_mipsel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../tabix_0.2.6-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0735
+Build finished at 20120622-0556
-tabix_0.2.5-3_mipsel.changes:
+tabix_0.2.6-1_mipsel.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: mipsel
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 098dba7b3fdb19c314b8574872d545b070b25a2e 66850 tabix_0.2.5-3_mipsel.deb
+ b067cde7c903b4bdf0d40e672ba134bd5fffb9dc 67596 tabix_0.2.6-1_mipsel.deb
Checksums-Sha256:
- 343715b81c09ac0be3a5f2a685d2e37d178fdca70970656ab78e9129ca82aba6 66850 tabix_0.2.5-3_mipsel.deb
+ 8603088d7b827d191bfdfb7b91ddcade96236d66ecc0ecc9cfd94a2a86506803 67596 tabix_0.2.6-1_mipsel.deb
Files:
- d3b2f07bb304fd233aa2c7880c430443 66850 science optional tabix_0.2.5-3_mipsel.deb
+ dc33fb7acb8066902e37fbe5b4e347e7 67596 science optional tabix_0.2.6-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_mipsel.deb
+tabix_0.2.6-1_mipsel.deb
────────────────────────
new debian package, version 2.0.
- size 66850 bytes: control archive= 995 bytes.
+ size 67596 bytes: control archive= 998 bytes.
781 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 167
@@ -1001,26 +976,26 @@ tabix_0.2.5-3_mipsel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:35 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/tabix/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/bin/
--rwxr-xr-x root/root 31820 2012-05-12 07:35 ./usr/bin/bgzip
--rwxr-xr-x root/root 82816 2012-05-12 07:35 ./usr/bin/tabix
-lrwxrwxrwx root/root 0 2012-05-12 07:35 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:56 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/tabix/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/bin/
+-rwxr-xr-x root/root 31828 2012-06-22 05:56 ./usr/bin/bgzip
+-rwxr-xr-x root/root 82824 2012-06-22 05:56 ./usr/bin/tabix
+lrwxrwxrwx root/root 0 2012-06-22 05:56 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1034,7 +1009,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-09596c2d-93c7-4599-9150-0b703e00ac77/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-722db500-da8a-4854-8c36-e8c77b8235b4/build/buildd-tabix_0.2.6-1-mipsel-yohTm0
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1042,19 +1017,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 1632
+Build-Space: 1596
Build-Time: 63
Distribution: sid
-Install-Time: 55
-Job: tabix_0.2.5-3
+Install-Time: 62
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 214
-Source-Version: 0.2.5-3
-Space: 1632
+Package-Time: 227
+Source-Version: 0.2.6-1
+Space: 1596
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0735
-Build needed 00:03:34, 1632k disc space
+Finished at 20120622-0556
+Build needed 00:03:47, 1596k disc space
Signature with key 'BDA682F0' requested:
diff --git a/mipsel.log b/mipsel.log
index ebe6702..b6161ae 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,4 +1,4 @@
-From buildd at rem.debian.org Sat May 12 07:35:38 2012
+From buildd at rem.debian.org Fri Jun 22 05:57:00 2012
Return-path: <buildd at rem.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,23 +6,23 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1ST6rZ-0002iW-Qt
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:38 +0000
+ id 1Shwrc-0003Zj-5d
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:57:00 +0000
Received: from rem.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d06])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=rem.debian.org, EMAIL=hostmaster at rem.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at rem.debian.org>)
- id 1ST6rY-0006PI-Sr
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:37 +0000
+ id 1Shwrb-00049C-2v
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:56:59 +0000
Received: from buildd by rem.debian.org with local (Exim 4.72)
- (envelope-from <buildd at rem.debian.org>) id 1ST6rW-0005ad-Ro
- for logs at buildd.debian.org; Sat, 12 May 2012 07:35:34 +0000
-Date: Sat, 12 May 2012 07:35:34 +0000
-Message-Id: <E1ST6rW-0005ad-Ro at rem.debian.org>
+ (envelope-from <buildd at rem.debian.org>) id 1Shwra-0002ON-96
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:56:58 +0000
+Date: Fri, 22 Jun 2012 05:56:58 +0000
+Message-Id: <E1Shwra-0002ON-96 at rem.debian.org>
From: buildd on rem <buildd at rem.debian.org>
To: logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on mipsel (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on mipsel (dist=sid)
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
Delivered-To: logs at buildd.debian.org
@@ -30,40 +30,31 @@ Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on rem.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (mipsel) 12 May 2012 07:31 ║
+║ tabix 0.2.6-1 (mipsel) 22 Jun 2012 05:53 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: mipsel
-Get:1 http://mirror.ayous.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://mirror.ayous.org unstable/main Sources [6282 kB]
+Get:1 http://mirror.ayous.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://mirror.ayous.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
-Get:4 http://mirror.ayous.org unstable/contrib Sources [54.7 kB]
-Get:5 http://mirror.ayous.org unstable/non-free Sources [96.6 kB]
-Get:6 http://mirror.ayous.org unstable/main mipsel Packages [5818 kB]
-Get:7 http://incoming.debian.org Release.gpg [836 B]
-Get:8 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:9 http://mirror.ayous.org unstable/contrib mipsel Packages [37.5 kB]
-Ign http://mirror.ayous.org unstable/contrib TranslationIndex
-Get:10 http://mirror.ayous.org unstable/main TranslationIndex [2295 B]
-Get:11 http://mirror.ayous.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://mirror.ayous.org unstable/main Translation-en [3953 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:15 http://incoming.debian.org unstable/main mipsel Packages [5818 kB]
-Get:16 http://incoming.debian.org unstable/contrib mipsel Packages [37.5 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:17 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:21 http://incoming.debian.org Sources [43.6 kB]
-Get:22 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 1min 1s (550 kB/s)
+Get:4 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:5 http://mirror.ayous.org unstable/contrib Sources [55.2 kB]
+Get:6 http://mirror.ayous.org unstable/non-free Sources [97.5 kB]
+Get:7 http://mirror.ayous.org unstable/main mipsel Packages [5908 kB]
+Get:8 http://mirror.ayous.org unstable/contrib mipsel Packages [38.1 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main mipsel Packages [5908 kB]
+Get:12 http://incoming.debian.org unstable/contrib mipsel Packages [38.1 kB]
+Get:13 http://incoming.debian.org Release.gpg [836 B]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [65.4 kB]
+Get:16 http://incoming.debian.org Packages [843 kB]
+Fetched 26.2 MB in 1min 12s (360 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -84,11 +75,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (104 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (79.0 kB/s)
Download complete and in download only mode
Check arch
@@ -102,18 +93,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.3-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 80 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 80 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -122,37 +113,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.5)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3)
-dash: already installed (0.5.7-2)
-debianutils: already installed (4.2.1)
-diffutils: already installed (1:3.2-1)
-dpkg: already installed (1.16.1.2)
-e2fsprogs: already installed (1.42-1)
+bash: already installed (4.2-2)
+coreutils: already installed (8.13-3.2)
+dash: already installed (0.5.7-3)
+debianutils: already installed (4.3)
+diffutils: already installed (1:3.2-6)
+dpkg: already installed (1.16.3)
+e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
-gzip: already installed (1.4-2)
-hostname: already installed (3.10)
-ncurses-base: already installed (5.9-4)
-ncurses-bin: already installed (5.9-4)
-perl-base: already installed (5.14.2-7)
+grep: already installed (2.12-2)
+gzip: already installed (1.4-5)
+hostname: already installed (3.11)
+ncurses-base: already installed (5.9-7)
+ncurses-bin: already installed (5.9-7)
+perl-base: already installed (5.14.2-11)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.4.2+svn3283-3)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-22.1)
+sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-1.2)
-mount: already installed (2.20.1-1.2)
-util-linux: already installed (2.20.1-1.2)
-libc6-dev: already installed (2.13-26)
-gcc: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.2-4 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.1.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -176,114 +167,114 @@ The following NEW packages will be installed:
zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 79 not upgraded.
-Need to get 9911 kB of archives.
-After this operation, 26.8 MB of additional disk space will be used.
-Get:1 http://mirror.ayous.org/debian/ unstable/main zlib1g mipsel 1:1.2.7.dfsg-1 [87.2 kB]
+1 upgraded, 21 newly installed, 0 to remove and 58 not upgraded.
+Need to get 9932 kB of archives.
+After this operation, 26.9 MB of additional disk space will be used.
+Get:1 http://mirror.ayous.org/debian/ unstable/main zlib1g mipsel 1:1.2.7.dfsg-12 [87.9 kB]
Get:2 http://mirror.ayous.org/debian/ unstable/main libpipeline1 mipsel 1.2.1-1 [36.7 kB]
-Get:3 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-7 [26.4 kB]
+Get:3 http://mirror.ayous.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.1.1-9 [26.8 kB]
Get:4 http://mirror.ayous.org/debian/ unstable/main libmagic1 mipsel 5.11-1 [251 kB]
Get:5 http://mirror.ayous.org/debian/ unstable/main libpcre3 mipsel 1:8.30-5 [245 kB]
-Get:6 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.7.8.dfsg-9 [860 kB]
+Get:6 http://mirror.ayous.org/debian/ unstable/main libxml2 mipsel 2.8.0+dfsg1-4 [867 kB]
Get:7 http://mirror.ayous.org/debian/ unstable/main libffi5 mipsel 3.0.10-3 [22.8 kB]
-Get:8 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.2-1 [1982 kB]
+Get:8 http://mirror.ayous.org/debian/ unstable/main libglib2.0-0 mipsel 2.32.3-1 [1985 kB]
Get:9 http://mirror.ayous.org/debian/ unstable/main libcroco3 mipsel 0.6.5-1 [139 kB]
Get:10 http://mirror.ayous.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
-Get:11 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-7 [139 kB]
-Get:12 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.1 [206 kB]
+Get:11 http://mirror.ayous.org/debian/ unstable/main libgettextpo0 mipsel 0.18.1.1-9 [139 kB]
+Get:12 http://mirror.ayous.org/debian/ unstable/main bsdmainutils mipsel 9.0.3 [207 kB]
Get:13 http://mirror.ayous.org/debian/ unstable/main groff-base mipsel 1.21-7 [1106 kB]
-Get:14 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.1-2 [1026 kB]
+Get:14 http://mirror.ayous.org/debian/ unstable/main man-db mipsel 2.6.2-1 [1029 kB]
Get:15 http://mirror.ayous.org/debian/ unstable/main file mipsel 5.11-1 [53.0 kB]
-Get:16 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-7 [140 kB]
+Get:16 http://mirror.ayous.org/debian/ unstable/main gettext-base mipsel 0.18.1.1-9 [140 kB]
Get:17 http://mirror.ayous.org/debian/ unstable/main html2text mipsel 1.3.2a-15 [103 kB]
-Get:18 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-7 [1917 kB]
+Get:18 http://mirror.ayous.org/debian/ unstable/main gettext mipsel 0.18.1.1-9 [1918 kB]
Get:19 http://mirror.ayous.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:20 http://mirror.ayous.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.7.dfsg-1 [215 kB]
+Get:21 http://mirror.ayous.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://mirror.ayous.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.7.dfsg-12 [214 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9911 kB in 1s (8589 kB/s)
-(Reading database ... 10676 files and directories currently installed.)
-Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.7.dfsg-1_mipsel.deb) ...
-Unpacking replacement zlib1g ...
-Setting up zlib1g (1:1.2.7.dfsg-1) ...
-Selecting previously unselected package libpipeline1.
-(Reading database ... 10676 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
-Selecting previously unselected package libasprintf0c2.
-Unpacking libasprintf0c2 (from .../libasprintf0c2_0.18.1.1-7_mipsel.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.11-1_mipsel.deb) ...
-Selecting previously unselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_1%3a8.30-5_mipsel.deb) ...
-Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-9_mipsel.deb) ...
-Selecting previously unselected package libffi5.
-Unpacking libffi5 (from .../libffi5_3.0.10-3_mipsel.deb) ...
-Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.32.2-1_mipsel.deb) ...
-Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.5-1_mipsel.deb) ...
-Selecting previously unselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-5_mipsel.deb) ...
-Selecting previously unselected package libgettextpo0.
-Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-7_mipsel.deb) ...
+Fetched 9932 kB in 3s (3115 kB/s)
+(Reading database ... 10751 files and directories currently installed.)
+Preparing to replace zlib1g:mipsel 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_mipsel.deb) ...
+Unpacking replacement zlib1g:mipsel ...
+Setting up zlib1g:mipsel (1:1.2.7.dfsg-12) ...
+Selecting previously unselected package libpipeline1:mipsel.
+(Reading database ... 10751 files and directories currently installed.)
+Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.1-1_mipsel.deb) ...
+Selecting previously unselected package libasprintf0c2:mipsel.
+Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-9_mipsel.deb) ...
+Selecting previously unselected package libmagic1:mipsel.
+Unpacking libmagic1:mipsel (from .../libmagic1_5.11-1_mipsel.deb) ...
+Selecting previously unselected package libpcre3:mipsel.
+Unpacking libpcre3:mipsel (from .../libpcre3_1%3a8.30-5_mipsel.deb) ...
+Selecting previously unselected package libxml2:mipsel.
+Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-4_mipsel.deb) ...
+Selecting previously unselected package libffi5:mipsel.
+Unpacking libffi5:mipsel (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Selecting previously unselected package libglib2.0-0:mipsel.
+Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.32.3-1_mipsel.deb) ...
+Selecting previously unselected package libcroco3:mipsel.
+Unpacking libcroco3:mipsel (from .../libcroco3_0.6.5-1_mipsel.deb) ...
+Selecting previously unselected package libunistring0:mipsel.
+Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
+Selecting previously unselected package libgettextpo0:mipsel.
+Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_mipsel.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_mipsel.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_mipsel.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_mipsel.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_mipsel.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1_mipsel.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_mipsel.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_mipsel.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_mipsel.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
-Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_mipsel.deb) ...
-Setting up libpipeline1 (1.2.1-1) ...
-Setting up libasprintf0c2 (0.18.1.1-7) ...
-Setting up libmagic1 (5.11-1) ...
-Setting up libpcre3 (1:8.30-5) ...
-Setting up libxml2 (2.7.8.dfsg-9) ...
-Setting up libffi5 (3.0.10-3) ...
-Setting up libglib2.0-0 (2.32.2-1) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Selecting previously unselected package zlib1g-dev:mipsel.
+Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_mipsel.deb) ...
+Setting up libpipeline1:mipsel (1.2.1-1) ...
+Setting up libasprintf0c2:mipsel (0.18.1.1-9) ...
+Setting up libmagic1:mipsel (5.11-1) ...
+Setting up libpcre3:mipsel (1:8.30-5) ...
+Setting up libxml2:mipsel (2.8.0+dfsg1-4) ...
+Setting up libffi5:mipsel (3.0.10-3) ...
+Setting up libglib2.0-0:mipsel (2.32.3-1) ...
No schema files found: doing nothing.
-Setting up libcroco3 (0.6.5-1) ...
-Setting up libunistring0 (0.9.3-5) ...
-Setting up libgettextpo0 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libcroco3:mipsel (0.6.5-1) ...
+Setting up libunistring0:mipsel (0.9.3-5) ...
+Setting up libgettextpo0:mipsel (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:mipsel (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 79 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-12 gcc-4.6_4.6.2-12 libc6-dev_2.13-26 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 linux-libc-dev_3.2.4-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.2-4 g++-4.6_4.6.2-12 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.6_4.6.2-12 gcc-4.6-base_4.6.2-12 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-7 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-1.2 libbz2-1.0_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libclass-isa-perl_0.36-3 libcomerr2_1.42-1 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-12 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.3+dfsg-1 libgomp1_4.6.2-12 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libss2_1.42-1 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.4-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-16 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tzdata_2011n-2 ucf_3.0025+nmu2 util-linux_2.20.1-1.2 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-12 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -294,15 +285,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -312,47 +301,47 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture mipsel
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_clean
- debian/rules build
-dh build
- dh_testdir
- dh_auto_configure
- dh_auto_build
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+ debian/rules build-arch
+dh build-arch
+ dh_testdir -a
+ dh_auto_configure -a
+ dh_auto_build -a
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
- dh_auto_test
+gcc -g -O2 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
+ dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
@@ -391,71 +380,68 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-mipsel-yohTm0/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../tabix_0.2.5-3_mipsel.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../tabix_0.2.6-1_mipsel.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0735
+Build finished at 20120622-0556
-tabix_0.2.5-3_mipsel.changes:
+tabix_0.2.6-1_mipsel.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: mipsel
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 098dba7b3fdb19c314b8574872d545b070b25a2e 66850 tabix_0.2.5-3_mipsel.deb
+ b067cde7c903b4bdf0d40e672ba134bd5fffb9dc 67596 tabix_0.2.6-1_mipsel.deb
Checksums-Sha256:
- 343715b81c09ac0be3a5f2a685d2e37d178fdca70970656ab78e9129ca82aba6 66850 tabix_0.2.5-3_mipsel.deb
+ 8603088d7b827d191bfdfb7b91ddcade96236d66ecc0ecc9cfd94a2a86506803 67596 tabix_0.2.6-1_mipsel.deb
Files:
- d3b2f07bb304fd233aa2c7880c430443 66850 science optional tabix_0.2.5-3_mipsel.deb
+ dc33fb7acb8066902e37fbe5b4e347e7 67596 science optional tabix_0.2.6-1_mipsel.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_mipsel.deb
+tabix_0.2.6-1_mipsel.deb
────────────────────────
new debian package, version 2.0.
- size 66850 bytes: control archive= 995 bytes.
+ size 67596 bytes: control archive= 998 bytes.
781 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: mipsel
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 167
@@ -471,26 +457,26 @@ tabix_0.2.5-3_mipsel.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:35 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/tabix/
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2012-05-12 07:35 ./usr/bin/
--rwxr-xr-x root/root 31820 2012-05-12 07:35 ./usr/bin/bgzip
--rwxr-xr-x root/root 82816 2012-05-12 07:35 ./usr/bin/tabix
-lrwxrwxrwx root/root 0 2012-05-12 07:35 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:56 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/tabix/
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+drwxr-xr-x root/root 0 2012-06-22 05:56 ./usr/bin/
+-rwxr-xr-x root/root 31828 2012-06-22 05:56 ./usr/bin/bgzip
+-rwxr-xr-x root/root 82824 2012-06-22 05:56 ./usr/bin/tabix
+lrwxrwxrwx root/root 0 2012-06-22 05:56 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -504,7 +490,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-09596c2d-93c7-4599-9150-0b703e00ac77/build/buildd-tabix_0.2.5-3-mipsel-5mxuXR
+Purging /var/lib/schroot/mount/sid-mipsel-sbuild-722db500-da8a-4854-8c36-e8c77b8235b4/build/buildd-tabix_0.2.6-1-mipsel-yohTm0
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -512,19 +498,19 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: mipsel
-Build-Space: 1632
+Build-Space: 1596
Build-Time: 63
Distribution: sid
-Install-Time: 55
-Job: tabix_0.2.5-3
+Install-Time: 62
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 214
-Source-Version: 0.2.5-3
-Space: 1632
+Package-Time: 227
+Source-Version: 0.2.6-1
+Space: 1596
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0735
-Build needed 00:03:34, 1632k disc space
+Finished at 20120622-0556
+Build needed 00:03:47, 1596k disc space
Signature with key 'BDA682F0' requested:
diff --git a/powerpc.log b/powerpc.log
index 514bb01..48874a1 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,64 +1,62 @@
-From buildd at parry.debian.org Sat May 12 07:30:39 2012
-Return-path: <buildd at parry.debian.org>
+From buildd at porpora.debian.org Fri Jun 22 05:01:15 2012
+Return-path: <buildd at porpora.debian.org>
Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=kokkonen.debian.org,
EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at parry.debian.org>)
- id 1ST6ml-0001wG-Ht
- for logs at buildd.debian.org; Sat, 12 May 2012 07:30:39 +0000
-Received: from parry.debian.org ([140.211.15.153])
+ (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
+ id 1Shvzf-0005JS-Fn
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:01:15 +0000
+Received: from porpora.ynic.york.ac.uk ([144.32.168.78]
+ helo=porpora.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=parry.debian.org, EMAIL=hostmaster at parry.debian.org (verified)
+ CN=porpora.debian.org, EMAIL=hostmaster at porpora.debian.org (verified)
by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at parry.debian.org>)
- id 1ST6mk-0004nm-0I; Sat, 12 May 2012 07:30:38 +0000
-Received: from buildd by parry.debian.org with local (Exim 4.72)
- (envelope-from <buildd at parry.debian.org>)
- id 1ST6mh-0004sU-Ow; Sat, 12 May 2012 07:30:35 +0000
-Date: Sat, 12 May 2012 07:30:35 +0000
-Message-Id: <E1ST6mh-0004sU-Ow at parry.debian.org>
-From: buildd on parry <buildd at parry.debian.org>
+ (Exim 4.72) (envelope-from <buildd at porpora.debian.org>)
+ id 1Shvze-00060J-2b; Fri, 22 Jun 2012 05:01:14 +0000
+Received: from buildd by porpora.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at porpora.debian.org>)
+ id 1Shvzd-0004CE-Jo; Fri, 22 Jun 2012 05:01:13 +0000
+Message-Id: <E1Shvzd-0004CE-Jo at porpora.debian.org>
+MIME-Version: 1.0
+Content-Transfer-Encoding: binary
+X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
+Date: Fri, 22 Jun 2012 05:01:13 +0000
+From: buildd on porpora <buildd at porpora.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on powerpc (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+Subject: Log for successful build of tabix_0.2.6-1 on powerpc (dist=sid)
+Key-Id: 06275D87
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on parry.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on porpora.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (powerpc) 12 May 2012 07:28 ║
+║ tabix 0.2.6-1 (powerpc) 22 Jun 2012 04:59 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: powerpc
-Get:1 http://debian.osuosl.org unstable InRelease [233 kB]
-Get:2 http://debian.osuosl.org unstable/main Sources [6282 kB]
-Get:3 http://incoming.debian.org unstable InRelease [233 kB]
-Get:4 http://debian.osuosl.org unstable/contrib Sources [54.7 kB]
-Get:5 http://debian.osuosl.org unstable/non-free Sources [96.6 kB]
-Get:6 http://debian.osuosl.org unstable/main powerpc Packages [5892 kB]
-Get:7 http://debian.osuosl.org unstable/contrib powerpc Packages [37.4 kB]
-Get:8 http://debian.osuosl.org unstable/contrib Translation-en [37.0 kB]
-Get:9 http://debian.osuosl.org unstable/main Translation-en [3953 kB]
+Get:1 http://ftp.uk.debian.org unstable InRelease [234 kB]
+Get:2 http://ftp.uk.debian.org unstable/main Sources [6326 kB]
+Get:3 http://incoming.debian.org unstable InRelease [234 kB]
Ign http://incoming.debian.org InRelease
-Get:10 http://incoming.debian.org Release.gpg [836 B]
-Get:11 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:12 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:13 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:14 http://incoming.debian.org unstable/main powerpc Packages [5892 kB]
-Get:15 http://incoming.debian.org unstable/contrib powerpc Packages [37.4 kB]
-Get:16 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:17 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:18 http://incoming.debian.org Release [1601 B]
-Get:19 http://incoming.debian.org Sources [43.6 kB]
-Get:20 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 34.0 MB in 12s (2747 kB/s)
+Get:4 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:5 http://ftp.uk.debian.org unstable/contrib Sources [55.2 kB]
+Get:6 http://ftp.uk.debian.org unstable/non-free Sources [97.5 kB]
+Get:7 http://ftp.uk.debian.org unstable/main powerpc Packages [5984 kB]
+Get:8 http://ftp.uk.debian.org unstable/contrib powerpc Packages [37.7 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:11 http://incoming.debian.org unstable/main powerpc Packages [5984 kB]
+Get:12 http://incoming.debian.org unstable/contrib powerpc Packages [37.7 kB]
+Get:13 http://incoming.debian.org Release.gpg [836 B]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [839 kB]
+Fetched 26.4 MB in 29s (894 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -79,11 +77,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (123 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (68.8 kB/s)
Download complete and in download only mode
Check arch
@@ -103,12 +101,12 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -117,37 +115,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.1)
+coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
+diffutils: already installed (1:3.2-6)
dpkg: already installed (1.16.3)
e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-6)
-ncurses-bin: already installed (5.9-6)
-perl-base: already installed (5.14.2-9)
+ncurses-base: already installed (5.9-7)
+ncurses-bin: already installed (5.9-7)
+perl-base: already installed (5.14.2-11)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
+login: already installed (1:4.1.5.1-1)
sysvinit-utils: already installed (2.88dsf-22.1)
sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-30)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -157,7 +155,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -167,113 +165,118 @@ Recommended packages:
The following NEW packages will be installed:
bsdmainutils debhelper file gettext gettext-base groff-base html2text
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
- libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
+ libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 20 newly installed, 0 to remove and 46 not upgraded.
-Need to get 9826 kB of archives.
-After this operation, 26.0 MB of additional disk space will be used.
-Get:1 http://debian.osuosl.org/debian/ unstable/main zlib1g powerpc 1:1.2.7.dfsg-1 [86.2 kB]
-Get:2 http://debian.osuosl.org/debian/ unstable/main libpipeline1 powerpc 1.2.1-1 [38.5 kB]
-Get:3 http://debian.osuosl.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-7 [26.8 kB]
-Get:4 http://debian.osuosl.org/debian/ unstable/main libmagic1 powerpc 5.11-1 [257 kB]
-Get:5 http://debian.osuosl.org/debian/ unstable/main libxml2 powerpc 2.7.8.dfsg-9 [843 kB]
-Get:6 http://debian.osuosl.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
-Get:7 http://debian.osuosl.org/debian/ unstable/main libglib2.0-0 powerpc 2.32.2-1 [2040 kB]
-Get:8 http://debian.osuosl.org/debian/ unstable/main libcroco3 powerpc 0.6.5-1 [143 kB]
-Get:9 http://debian.osuosl.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
-Get:10 http://debian.osuosl.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-7 [137 kB]
-Get:11 http://debian.osuosl.org/debian/ unstable/main bsdmainutils powerpc 9.0.1 [208 kB]
-Get:12 http://debian.osuosl.org/debian/ unstable/main groff-base powerpc 1.21-7 [1179 kB]
-Get:13 http://debian.osuosl.org/debian/ unstable/main man-db powerpc 2.6.1-2 [1054 kB]
-Get:14 http://debian.osuosl.org/debian/ unstable/main file powerpc 5.11-1 [53.1 kB]
-Get:15 http://debian.osuosl.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-7 [130 kB]
-Get:16 http://debian.osuosl.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:17 http://debian.osuosl.org/debian/ unstable/main gettext powerpc 0.18.1.1-7 [1920 kB]
-Get:18 http://debian.osuosl.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:19 http://debian.osuosl.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:20 http://debian.osuosl.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:21 http://debian.osuosl.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.7.dfsg-1 [212 kB]
+1 upgraded, 21 newly installed, 0 to remove and 58 not upgraded.
+Need to get 10.1 MB of archives.
+After this operation, 26.6 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main zlib1g powerpc 1:1.2.7.dfsg-12 [87.0 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.1-1 [38.5 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-9 [27.0 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 powerpc 5.11-1 [257 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 powerpc 1:8.30-5 [240 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main libxml2 powerpc 2.8.0+dfsg1-4 [851 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.32.3-1 [2044 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.5-1 [143 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-9 [137 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils powerpc 9.0.3 [208 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main groff-base powerpc 1.21-7 [1179 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main man-db powerpc 2.6.2-1 [1062 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main file powerpc 5.11-1 [53.1 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-9 [131 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main gettext powerpc 0.18.1.1-9 [1929 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.7.dfsg-12 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9826 kB in 1s (8533 kB/s)
-(Reading database ... 10913 files and directories currently installed.)
-Preparing to replace zlib1g:powerpc 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_powerpc.deb) ...
+Fetched 10.1 MB in 3s (2942 kB/s)
+(Reading database ... 10746 files and directories currently installed.)
+Preparing to replace zlib1g:powerpc 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_powerpc.deb) ...
Unpacking replacement zlib1g:powerpc ...
-Setting up zlib1g:powerpc (1:1.2.7.dfsg-1) ...
+Setting up zlib1g:powerpc (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:powerpc.
-(Reading database ... 10913 files and directories currently installed.)
+(Reading database ... 10746 files and directories currently installed.)
Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.1-1_powerpc.deb) ...
Selecting previously unselected package libasprintf0c2:powerpc.
-Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-7_powerpc.deb) ...
+Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-9_powerpc.deb) ...
Selecting previously unselected package libmagic1:powerpc.
Unpacking libmagic1:powerpc (from .../libmagic1_5.11-1_powerpc.deb) ...
+Selecting previously unselected package libpcre3:powerpc.
+Unpacking libpcre3:powerpc (from .../libpcre3_1%3a8.30-5_powerpc.deb) ...
Selecting previously unselected package libxml2:powerpc.
-Unpacking libxml2:powerpc (from .../libxml2_2.7.8.dfsg-9_powerpc.deb) ...
+Unpacking libxml2:powerpc (from .../libxml2_2.8.0+dfsg1-4_powerpc.deb) ...
Selecting previously unselected package libffi5:powerpc.
Unpacking libffi5:powerpc (from .../libffi5_3.0.10-3_powerpc.deb) ...
Selecting previously unselected package libglib2.0-0:powerpc.
-Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.32.2-1_powerpc.deb) ...
+Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.32.3-1_powerpc.deb) ...
Selecting previously unselected package libcroco3:powerpc.
Unpacking libcroco3:powerpc (from .../libcroco3_0.6.5-1_powerpc.deb) ...
Selecting previously unselected package libunistring0:powerpc.
Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5_powerpc.deb) ...
Selecting previously unselected package libgettextpo0:powerpc.
-Unpacking libgettextpo0:powerpc (from .../libgettextpo0_0.18.1.1-7_powerpc.deb) ...
+Unpacking libgettextpo0:powerpc (from .../libgettextpo0_0.18.1.1-9_powerpc.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_powerpc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_powerpc.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_powerpc.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_powerpc.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_powerpc.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../file_5.11-1_powerpc.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_powerpc.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_powerpc.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_powerpc.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_powerpc.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:powerpc.
-Unpacking zlib1g-dev:powerpc (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_powerpc.deb) ...
+Unpacking zlib1g-dev:powerpc (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_powerpc.deb) ...
Setting up libpipeline1:powerpc (1.2.1-1) ...
-Setting up libasprintf0c2:powerpc (0.18.1.1-7) ...
+Setting up libasprintf0c2:powerpc (0.18.1.1-9) ...
Setting up libmagic1:powerpc (5.11-1) ...
-Setting up libxml2:powerpc (2.7.8.dfsg-9) ...
+Setting up libpcre3:powerpc (1:8.30-5) ...
+Setting up libxml2:powerpc (2.8.0+dfsg1-4) ...
Setting up libffi5:powerpc (3.0.10-3) ...
-Setting up libglib2.0-0:powerpc (2.32.2-1) ...
+Setting up libglib2.0-0:powerpc (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:powerpc (0.6.5-1) ...
Setting up libunistring0:powerpc (0.9.3-5) ...
-Setting up libgettextpo0:powerpc (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:powerpc (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:powerpc (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:powerpc (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-4 gcc-4.6_4.6.3-4 libc6-dev_2.13-30 libstdc++6_4.7.0-4 libstdc++6-4.6-dev_4.6.3-4 linux-libc-dev_3.2.15-1
-Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-4 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-4 g++-4.6_4.6.3-4 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-4 gcc-4.6-base_4.6.3-4 gcc-4.7-base_4.7.0-4 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.2 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-4 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-4 liblocale-gettext-perl_1.05-7+b1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-4 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-9 libss2_1.42.2-2 libstdc++6_4.7.0-4 libstdc++6-4.6-dev_4.6.3-4 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.15-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -284,15 +287,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -302,46 +303,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture powerpc
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -381,9 +382,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-powerpc-fWugLi/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -393,59 +394,56 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org> >../tabix_0.2.5-3_powerpc.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org> >../tabix_0.2.6-1_powerpc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0730
+Build finished at 20120622-0501
-tabix_0.2.5-3_powerpc.changes:
+tabix_0.2.6-1_powerpc.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: powerpc
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: powerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: powerpc Build Daemon (porpora) <buildd_powerpc-porpora at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 25dbb1e4e8c265ad935f0234de976792570e82e0 62180 tabix_0.2.5-3_powerpc.deb
+ a5b2df19be4cf66de70cd5b549b4faf7385d5b9a 62598 tabix_0.2.6-1_powerpc.deb
Checksums-Sha256:
- d6cb6612d84f496e2b1fb10cf07b0a8c34369f81837abcb0b6caec96309dd688 62180 tabix_0.2.5-3_powerpc.deb
+ 9303c225a3923f2aedb517d750a676cdbfe2db08bc7ba8b43fa0ed0725e67e51 62598 tabix_0.2.6-1_powerpc.deb
Files:
- 6e251943ae547150c0d0f817864e697a 62180 science optional tabix_0.2.5-3_powerpc.deb
+ 155790225f2be893cc89db9d11c7a35a 62598 science optional tabix_0.2.6-1_powerpc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_powerpc.deb
+tabix_0.2.6-1_powerpc.deb
─────────────────────────
new debian package, version 2.0.
- size 62180 bytes: control archive= 993 bytes.
+ size 62598 bytes: control archive= 992 bytes.
782 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: powerpc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 151
@@ -461,26 +459,26 @@ tabix_0.2.5-3_powerpc.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/bin/
--rwxr-xr-x root/root 71480 2012-05-12 07:29 ./usr/bin/tabix
--rwxr-xr-x root/root 26264 2012-05-12 07:29 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:29 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/doc/tabix/
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:29 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
-lrwxrwxrwx root/root 0 2012-05-12 07:29 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/bin/
+-rwxr-xr-x root/root 71484 2012-06-22 05:01 ./usr/bin/tabix
+-rwxr-xr-x root/root 26272 2012-06-22 05:01 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:00 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2012-06-22 05:00 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2012-06-22 05:01 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -494,7 +492,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-4ccbfdca-2324-46af-913c-449146180e6a/build/buildd-tabix_0.2.5-3-powerpc-fWugLi
+Purging /var/lib/schroot/mount/sid-powerpc-sbuild-4a669ee2-5084-4d2a-b302-123cc891cdbc/build/buildd-tabix_0.2.6-1-powerpc-AJE8pe
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -502,19 +500,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: powerpc
-Build-Space: 1564
-Build-Time: 10
+Build-Space: 1536
+Build-Time: 21
Distribution: sid
-Install-Time: 61
-Job: tabix_0.2.5-3
+Install-Time: 47
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 94
-Source-Version: 0.2.5-3
-Space: 1564
+Package-Time: 112
+Source-Version: 0.2.6-1
+Space: 1536
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0730
-Build needed 00:01:34, 1564k disc space
-Signature with key '9811BFE6' requested:
-
+Finished at 20120622-0501
+Build needed 00:01:52, 1536k disc space
+Signature with key '06275D87' requested:
diff --git a/s390.log b/s390.log
index a521b4d..dbbf78e 100644
--- a/s390.log
+++ b/s390.log
@@ -1,71 +1,62 @@
-From buildd at zandonai.debian.org Sat May 12 07:32:29 2012
+From buildd at zandonai.debian.org Fri Jun 22 05:01:48 2012
Return-path: <buildd at zandonai.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
+Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
+ CN=kokkonen.debian.org,
+ EMAIL=hostmaster at kokkonen.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1ST6oX-0002IV-KD
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:29 +0000
+ id 1Shw0C-0005Pq-19
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:01:48 +0000
Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=zandonai.debian.org,
EMAIL=hostmaster at zandonai.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1ST6oW-00067y-Nr; Sat, 12 May 2012 07:32:28 +0000
+ id 1Shw0A-00061l-SB; Fri, 22 Jun 2012 05:01:46 +0000
Received: from buildd by zandonai.debian.org with local (Exim 4.72)
(envelope-from <buildd at zandonai.debian.org>)
- id 1ST6oV-0006Oh-K5; Sat, 12 May 2012 07:32:27 +0000
-Message-Id: <E1ST6oV-0006Oh-K5 at zandonai.debian.org>
+ id 1Shw09-000167-35; Fri, 22 Jun 2012 05:01:45 +0000
+Message-Id: <E1Shw09-000167-35 at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:32:27 +0000
+Date: Fri, 22 Jun 2012 05:01:45 +0000
From: buildd on zandonai <buildd at zandonai.debian.org>
To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on s390 (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on s390 (dist=sid)
Key-Id: E7C67939
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (s390) 12 May 2012 07:31 ║
+║ tabix 0.2.6-1 (s390) 22 Jun 2012 04:59 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: s390
-Get:1 http://ftp.de.debian.org unstable InRelease [233 kB]
-Get:2 http://ftp.de.debian.org unstable/main Sources [6282 kB]
-Get:3 http://incoming.debian.org unstable InRelease [233 kB]
+Hit http://incoming.debian.org unstable InRelease
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:6 http://ftp.de.debian.org unstable/contrib Sources [54.7 kB]
-Get:7 http://ftp.de.debian.org unstable/non-free Sources [96.6 kB]
-Get:8 http://ftp.de.debian.org unstable/main s390 Packages [5802 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:11 http://incoming.debian.org unstable/main s390 Packages [5802 kB]
-Get:12 http://incoming.debian.org unstable/contrib s390 Packages [37.1 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:13 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:14 http://incoming.debian.org Release [1601 B]
-Get:15 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://ftp.de.debian.org unstable/contrib s390 Packages [37.1 kB]
-Ign http://ftp.de.debian.org unstable/contrib TranslationIndex
-Get:17 http://ftp.de.debian.org unstable/main TranslationIndex [2295 B]
-Get:18 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:19 http://ftp.de.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:20 http://ftp.de.debian.org unstable/main Translation-en [3953 kB]
-Get:21 http://incoming.debian.org Sources [43.6 kB]
-Get:22 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.8 MB in 12s (2604 kB/s)
+Hit http://incoming.debian.org unstable/main Sources
+Hit http://ftp.de.debian.org unstable InRelease
+Hit http://incoming.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable/non-free Sources
+Hit http://ftp.de.debian.org unstable/main Sources
+Hit http://incoming.debian.org unstable/main s390 Packages
+Hit http://ftp.de.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable/contrib s390 Packages
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Hit http://ftp.de.debian.org unstable/non-free Sources
+Get:2 http://incoming.debian.org Release [1601 B]
+Hit http://ftp.de.debian.org unstable/main s390 Packages
+Get:3 http://incoming.debian.org Sources [63.5 kB]
+Hit http://ftp.de.debian.org unstable/contrib s390 Packages
+Get:4 http://incoming.debian.org Packages [839 kB]
+Fetched 905 kB in 7s (129 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -86,11 +77,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (93.8 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (68.9 kB/s)
Download complete and in download only mode
Check arch
@@ -104,18 +95,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.2-1)
+fakeroot: already installed (1.18.3-1)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -124,37 +115,37 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.9)
base-passwd: already installed (3.5.24)
-bash: already installed (4.2-1)
-coreutils: already installed (8.13-3.1)
+bash: already installed (4.2-2)
+coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
debianutils: already installed (4.3)
-diffutils: already installed (1:3.2-2)
-dpkg: already installed (1.16.2)
-e2fsprogs: already installed (1.42.2-1)
+diffutils: already installed (1:3.2-6)
+dpkg: already installed (1.16.3)
+e2fsprogs: already installed (1.42.2-2)
findutils: already installed (4.4.2-4)
-grep: already installed (2.10-1)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-5)
-ncurses-bin: already installed (5.9-5)
-perl-base: already installed (5.14.2-9)
+ncurses-base: already installed (5.9-7)
+ncurses-bin: already installed (5.9-7)
+perl-base: already installed (5.14.2-11)
sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
+login: already installed (1:4.1.5.1-1)
sysvinit-utils: already installed (2.88dsf-22.1)
sysvinit: already installed (2.88dsf-22.1)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-27)
-gcc: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-3 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.1)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+make: already installed (3.81-8.2)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -178,114 +169,114 @@ The following NEW packages will be installed:
zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 57 not upgraded.
+1 upgraded, 21 newly installed, 0 to remove and 58 not upgraded.
Need to get 10.3 MB of archives.
-After this operation, 26.7 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390 1:1.2.7.dfsg-1 [91.0 kB]
+After this operation, 26.8 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main zlib1g s390 1:1.2.7.dfsg-12 [91.2 kB]
Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.1-1 [40.0 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-7 [26.4 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-9 [26.8 kB]
Get:4 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.11-1 [260 kB]
Get:5 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 1:8.30-5 [248 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.7.8.dfsg-9 [882 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.8.0+dfsg1-4 [891 kB]
Get:7 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390 3.0.10-3 [25.3 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.32.2-1 [2121 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.32.3-1 [2122 kB]
Get:9 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.5-1 [150 kB]
Get:10 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-7 [146 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.1 [213 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-9 [146 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.3 [213 kB]
Get:13 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-7 [1145 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.1-2 [1068 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.2-1 [1074 kB]
Get:15 http://ftp.de.debian.org/debian/ unstable/main file s390 5.11-1 [53.7 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-7 [141 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-9 [152 kB]
Get:17 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-7 [1950 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-9 [1959 kB]
Get:19 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:20 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.7.dfsg-1 [215 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.7.dfsg-12 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.3 MB in 3s (3022 kB/s)
-(Reading database ... 10731 files and directories currently installed.)
-Preparing to replace zlib1g:s390 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_s390.deb) ...
+Fetched 10.3 MB in 1min 9s (148 kB/s)
+(Reading database ... 10680 files and directories currently installed.)
+Preparing to replace zlib1g:s390 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_s390.deb) ...
Unpacking replacement zlib1g:s390 ...
-Setting up zlib1g:s390 (1:1.2.7.dfsg-1) ...
+Setting up zlib1g:s390 (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:s390.
-(Reading database ... 10731 files and directories currently installed.)
+(Reading database ... 10680 files and directories currently installed.)
Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.1-1_s390.deb) ...
Selecting previously unselected package libasprintf0c2:s390.
-Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-7_s390.deb) ...
+Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-9_s390.deb) ...
Selecting previously unselected package libmagic1:s390.
Unpacking libmagic1:s390 (from .../libmagic1_5.11-1_s390.deb) ...
Selecting previously unselected package libpcre3:s390.
Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.30-5_s390.deb) ...
Selecting previously unselected package libxml2:s390.
-Unpacking libxml2:s390 (from .../libxml2_2.7.8.dfsg-9_s390.deb) ...
+Unpacking libxml2:s390 (from .../libxml2_2.8.0+dfsg1-4_s390.deb) ...
Selecting previously unselected package libffi5:s390.
Unpacking libffi5:s390 (from .../libffi5_3.0.10-3_s390.deb) ...
Selecting previously unselected package libglib2.0-0:s390.
-Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.32.2-1_s390.deb) ...
+Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.32.3-1_s390.deb) ...
Selecting previously unselected package libcroco3:s390.
Unpacking libcroco3:s390 (from .../libcroco3_0.6.5-1_s390.deb) ...
Selecting previously unselected package libunistring0:s390.
Unpacking libunistring0:s390 (from .../libunistring0_0.9.3-5_s390.deb) ...
Selecting previously unselected package libgettextpo0:s390.
-Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-7_s390.deb) ...
+Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-9_s390.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_s390.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_s390.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_s390.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_s390.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_s390.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_s390.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_s390.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_s390.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_s390.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:s390.
-Unpacking zlib1g-dev:s390 (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_s390.deb) ...
+Unpacking zlib1g-dev:s390 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_s390.deb) ...
Setting up libpipeline1:s390 (1.2.1-1) ...
-Setting up libasprintf0c2:s390 (0.18.1.1-7) ...
+Setting up libasprintf0c2:s390 (0.18.1.1-9) ...
Setting up libmagic1:s390 (5.11-1) ...
Setting up libpcre3:s390 (1:8.30-5) ...
-Setting up libxml2:s390 (2.7.8.dfsg-9) ...
+Setting up libxml2:s390 (2.8.0+dfsg1-4) ...
Setting up libffi5:s390 (3.0.10-3) ...
-Setting up libglib2.0-0:s390 (2.32.2-1) ...
+Setting up libglib2.0-0:s390 (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:s390 (0.6.5-1) ...
Setting up libunistring0:s390 (0.9.3-5) ...
-Setting up libgettextpo0:s390 (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:s390 (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:s390 (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:s390 (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 57 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 58 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.7.0-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.13-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-3 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-2 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-1 e2fsprogs_1.42.2-1 fakeroot_1.18.2-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-3 g++-4.6_4.6.3-1 gcc_4:4.6.3-3 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gcc-4.7-base_4.7.0-1 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.10-1 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-1 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-1 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-5 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-2 libslang2_2.2.4-7 libss2_1.42.2-1 libstdc++6_4.7.0-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.13-1 login_1:4.1.5-1 lsb-base_4.1+Debian0 make_3.81-8.1 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-5 ncurses-bin_5.9-5 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu2 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.4-base_4.4.7-1 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -296,15 +287,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -314,46 +303,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture s390
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -393,9 +382,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390-BCca0L/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390-VucYy9/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -405,62 +394,59 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_s390.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.5-3_s390.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_s390.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.6-1_s390.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0732
+Build finished at 20120622-0501
-tabix_0.2.5-3_s390.changes:
+tabix_0.2.6-1_s390.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: s390
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- c8f1e7756da3f7d44bd32760b52e0b197ce98b4d 67430 tabix_0.2.5-3_s390.deb
+ 7a6867ec2e908f2afa8eaf0b5e250806d0ac536b 68248 tabix_0.2.6-1_s390.deb
Checksums-Sha256:
- e1c4b3394e05d4c367fc05fc37db958cd57278e568dec4d850fbf29356aa92ec 67430 tabix_0.2.5-3_s390.deb
+ 658064960a42841b439e2e94b93f44408113d58cb94f09c653b3f5e779399648 68248 tabix_0.2.6-1_s390.deb
Files:
- e2809a97ce9d4fd7aa2cdabd8051daf9 67430 science optional tabix_0.2.5-3_s390.deb
+ 0db764208fbde037fb4c51c36c44a889 68248 science optional tabix_0.2.6-1_s390.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_s390.deb
+tabix_0.2.6-1_s390.deb
──────────────────────
new debian package, version 2.0.
- size 67430 bytes: control archive= 990 bytes.
+ size 68248 bytes: control archive= 992 bytes.
779 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: s390
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 162
+ Installed-Size: 163
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -473,26 +459,26 @@ tabix_0.2.5-3_s390.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/bin/
--rwxr-xr-x root/root 30244 2012-05-12 07:32 ./usr/bin/bgzip
--rwxr-xr-x root/root 79572 2012-05-12 07:32 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:32 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-lrwxrwxrwx root/root 0 2012-05-12 07:32 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/bin/
+-rwxr-xr-x root/root 30252 2012-06-22 05:01 ./usr/bin/bgzip
+-rwxr-xr-x root/root 79576 2012-06-22 05:01 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:01 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2012-06-22 05:01 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2012-06-22 05:01 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -506,7 +492,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390-sbuild-2ba4606b-e935-4db9-a090-af944e27e31b/build/buildd-tabix_0.2.5-3-s390-BCca0L
+Purging /var/lib/schroot/mount/sid-s390-sbuild-55170790-a27d-41ce-8c70-3edd307481e3/build/buildd-tabix_0.2.6-1-s390-VucYy9
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -514,88 +500,80 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390
-Build-Space: 1724
-Build-Time: 9
+Build-Space: 1672
+Build-Time: 14
Distribution: sid
-Install-Time: 9
-Job: tabix_0.2.5-3
+Install-Time: 78
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 44
-Source-Version: 0.2.5-3
-Space: 1724
+Package-Time: 113
+Source-Version: 0.2.6-1
+Space: 1672
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0732
-Build needed 00:00:44, 1724k disc space
+Finished at 20120622-0501
+Build needed 00:01:53, 1672k disc space
Signature with key 'E7C67939' requested:
-From buildd at zappa.debian.org Sat May 12 07:32:00 2012
-Return-path: <buildd at zappa.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at zandonai.debian.org Fri Jun 22 05:03:08 2012
+Return-path: <buildd at zandonai.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o4-0002ES-8M
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:00 +0000
-Received: from [148.100.96.103] (helo=zappa.debian.org)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1U-0005Uh-DY
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:03:08 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=zappa.debian.org, EMAIL=hostmaster at zappa.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o3-0004xE-32; Sat, 12 May 2012 07:31:59 +0000
-Received: from buildd by zappa.debian.org with local (Exim 4.72)
- (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o1-00055e-1w; Sat, 12 May 2012 07:31:57 +0000
-Message-Id: <E1ST6o1-00055e-1w at zappa.debian.org>
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1S-0001aA-9V; Fri, 22 Jun 2012 05:03:06 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1Q-0001Nu-U7; Fri, 22 Jun 2012 05:03:04 +0000
+Message-Id: <E1Shw1Q-0001Nu-U7 at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:31:56 +0000
-From: buildd on zappa <buildd at zappa.debian.org>
+Date: Fri, 22 Jun 2012 05:03:04 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on s390x (dist=sid)
-Key-Id: D1955623
+Subject: Log for successful build of tabix_0.2.6-1 on s390x (dist=sid)
+Key-Id: BE1C5586
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zappa.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (s390x) 12 May 2012 07:28 ║
+║ tabix 0.2.6-1 (s390x) 22 Jun 2012 05:01 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: s390x
-Get:1 http://ftp.us.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.us.debian.org unstable/main Sources [6282 kB]
+Hit http://ftp.de.debian.org unstable InRelease
+Hit http://ftp.de.debian.org unstable/main Sources
+Hit http://ftp.de.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable InRelease
+Hit http://ftp.de.debian.org unstable/non-free Sources
+Hit http://ftp.de.debian.org unstable/main s390x Packages
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:7 http://ftp.us.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.us.debian.org unstable/non-free Sources [96.6 kB]
-Get:9 http://ftp.us.debian.org unstable/main s390x Packages [5725 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:12 http://incoming.debian.org unstable/main s390x Packages [5725 kB]
-Get:13 http://ftp.us.debian.org unstable/contrib s390x Packages [36.6 kB]
-Ign http://ftp.us.debian.org unstable/contrib TranslationIndex
-Get:14 http://ftp.us.debian.org unstable/main TranslationIndex [2295 B]
-Get:15 http://ftp.us.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://ftp.us.debian.org unstable/main Translation-en [3953 kB]
-Get:17 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:18 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:19 http://incoming.debian.org Sources [43.6 kB]
-Get:20 http://incoming.debian.org Packages [767 kB]
-Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:22 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.7 MB in 1min 28s (381 kB/s)
+Hit http://ftp.de.debian.org unstable/contrib s390x Packages
+Hit http://incoming.debian.org unstable/main Sources
+Hit http://incoming.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable/non-free Sources
+Hit http://incoming.debian.org unstable/main s390x Packages
+Hit http://incoming.debian.org unstable/contrib s390x Packages
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Get:2 http://incoming.debian.org Release [1601 B]
+Get:3 http://incoming.debian.org Sources [63.5 kB]
+Get:4 http://incoming.debian.org Packages [839 kB]
+Fetched 905 kB in 4s (202 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -616,11 +594,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (379 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (69.6 kB/s)
Download complete and in download only mode
Check arch
@@ -640,12 +618,12 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -654,13 +632,13 @@ Checking correctness of dependencies...
Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-30)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -670,7 +648,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -682,116 +660,109 @@ The following NEW packages will be installed:
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
zlib1g-dev
-The following packages will be upgraded:
- zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 21 newly installed, 0 to remove and 59 not upgraded.
Need to get 10.4 MB of archives.
-After this operation, 27.9 MB of additional disk space will be used.
-Get:1 http://ftp.us.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.7.dfsg-1 [92.6 kB]
-Get:2 http://ftp.us.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:3 http://ftp.us.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-7 [26.6 kB]
-Get:4 http://ftp.us.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:5 http://ftp.us.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
-Get:6 http://ftp.us.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-9 [895 kB]
-Get:7 http://ftp.us.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:8 http://ftp.us.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.2-1 [2104 kB]
-Get:9 http://ftp.us.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:10 http://ftp.us.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:11 http://ftp.us.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-7 [157 kB]
-Get:12 http://ftp.us.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:13 http://ftp.us.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:14 http://ftp.us.debian.org/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:15 http://ftp.us.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:16 http://ftp.us.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-7 [155 kB]
-Get:17 http://ftp.us.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:18 http://ftp.us.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-7 [2030 kB]
-Get:19 http://ftp.us.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:20 http://ftp.us.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://ftp.us.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://ftp.us.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-1 [219 kB]
+After this operation, 28.0 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-9 [26.8 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-4 [901 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.3-1 [2105 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-9 [158 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.3 [215 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.2-1 [1069 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-9 [156 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-9 [2037 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-2 [220 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.4 MB in 10s (1008 kB/s)
-(Reading database ... 10861 files and directories currently installed.)
-Preparing to replace zlib1g:s390x 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_s390x.deb) ...
-Unpacking replacement zlib1g:s390x ...
-Setting up zlib1g:s390x (1:1.2.7.dfsg-1) ...
+Fetched 10.4 MB in 7s (1312 kB/s)
Selecting previously unselected package libpipeline1:s390x.
-(Reading database ... 10861 files and directories currently installed.)
+(Reading database ... 10804 files and directories currently installed.)
Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.1-1_s390x.deb) ...
Selecting previously unselected package libasprintf0c2:s390x.
-Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-7_s390x.deb) ...
+Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package libmagic1:s390x.
Unpacking libmagic1:s390x (from .../libmagic1_5.11-1_s390x.deb) ...
Selecting previously unselected package libpcre3:s390x.
Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.30-5_s390x.deb) ...
Selecting previously unselected package libxml2:s390x.
-Unpacking libxml2:s390x (from .../libxml2_2.7.8.dfsg-9_s390x.deb) ...
+Unpacking libxml2:s390x (from .../libxml2_2.8.0+dfsg1-4_s390x.deb) ...
Selecting previously unselected package libffi5:s390x.
Unpacking libffi5:s390x (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
Selecting previously unselected package libglib2.0-0:s390x.
-Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.32.2-1_s390x.deb) ...
+Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.32.3-1_s390x.deb) ...
Selecting previously unselected package libcroco3:s390x.
Unpacking libcroco3:s390x (from .../libcroco3_0.6.5-1_s390x.deb) ...
Selecting previously unselected package libunistring0:s390x.
Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
Selecting previously unselected package libgettextpo0:s390x.
-Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-7_s390x.deb) ...
+Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390x.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390x.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_s390x.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_s390x.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_s390x.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_s390x.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_s390x.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_s390x.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:s390x.
-Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_s390x.deb) ...
+Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-2_s390x.deb) ...
Setting up libpipeline1:s390x (1.2.1-1) ...
-Setting up libasprintf0c2:s390x (0.18.1.1-7) ...
+Setting up libasprintf0c2:s390x (0.18.1.1-9) ...
Setting up libmagic1:s390x (5.11-1) ...
Setting up libpcre3:s390x (1:8.30-5) ...
-Setting up libxml2:s390x (2.7.8.dfsg-9) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-4) ...
Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.2-1) ...
+Setting up libglib2.0-0:s390x (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:s390x (0.6.5-1) ...
Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-4 gcc-4.6_4.6.3-4 libc6-dev_2.13-30 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-4 linux-libc-dev_3.2.15-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-4 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-3 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-4 g++-4.6_4.6.3-4 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-4 gcc-4.6-base_4.6.3-4 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-8 libss2_1.42.2-2 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-4 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.15-1 login_1:4.1.5-1 lsb-base_4.1+Debian1 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1+b1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-10 perl-base_5.14.2-10 perl-modules_5.14.2-10 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-2 zlib1g-dev_1:1.2.7.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -802,15 +773,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -820,46 +789,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -899,9 +868,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -911,59 +880,56 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org> >../tabix_0.2.5-3_s390x.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.6-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0731
+Build finished at 20120622-0503
-tabix_0.2.5-3_s390x.changes:
+tabix_0.2.6-1_s390x.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: s390x
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: s390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 93f16c05a556c3ef46908176c21e20869e8433f4 64548 tabix_0.2.5-3_s390x.deb
+ 5868010210f329e235d0cc30389b24259dbb8502 65430 tabix_0.2.6-1_s390x.deb
Checksums-Sha256:
- 6939b8482e986245ac097894a96bf9ee899ceddc648ca5bd41e98405813d6d52 64548 tabix_0.2.5-3_s390x.deb
+ 4aca1c87b2bbb4710fee71dc379da3d8b4da52a610edcf896c1a4c285d590916 65430 tabix_0.2.6-1_s390x.deb
Files:
- ae9e3f2b87131c0f823948b5276ad3d6 64548 science optional tabix_0.2.5-3_s390x.deb
+ 9fee3f6a1f2629071f3a5d5d9d31d4a7 65430 science optional tabix_0.2.6-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_s390x.deb
+tabix_0.2.6-1_s390x.deb
───────────────────────
new debian package, version 2.0.
- size 64548 bytes: control archive= 994 bytes.
+ size 65430 bytes: control archive= 993 bytes.
781 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 168
@@ -979,26 +945,26 @@ tabix_0.2.5-3_s390x.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/bin/
--rwxr-xr-x root/root 31152 2012-05-12 07:31 ./usr/bin/bgzip
--rwxr-xr-x root/root 84680 2012-05-12 07:31 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:31 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/tabix/
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
-lrwxrwxrwx root/root 0 2012-05-12 07:31 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/bin/
+-rwxr-xr-x root/root 31168 2012-06-22 05:02 ./usr/bin/bgzip
+-rwxr-xr-x root/root 84696 2012-06-22 05:02 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:02 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2012-06-22 05:02 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1012,7 +978,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-ae763de0-fb43-4c01-9f39-df27379b7df0/build/buildd-tabix_0.2.5-3-s390x-C5IdGN
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-e0ad626a-ac17-4ff3-bf12-8e26b6561b27/sid-s390x-sbuild/build/buildd-tabix_0.2.6-1-s390x-Ab_5il
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1020,18 +986,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 1984
-Build-Time: 30
+Build-Space: 1968
+Build-Time: 17
Distribution: sid
-Install-Time: 47
-Job: tabix_0.2.5-3
+Install-Time: 20
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 183
-Source-Version: 0.2.5-3
-Space: 1984
+Package-Time: 65
+Source-Version: 0.2.6-1
+Space: 1968
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0731
-Build needed 00:03:03, 1984k disc space
-Signature with key 'D1955623' requested:
+Finished at 20120622-0503
+Build needed 00:01:05, 1968k disc space
+Signature with key 'BE1C5586' requested:
diff --git a/s390x.log b/s390x.log
index 16a859f..5ec628a 100644
--- a/s390x.log
+++ b/s390x.log
@@ -1,70 +1,62 @@
-From buildd at zappa.debian.org Sat May 12 07:32:00 2012
-Return-path: <buildd at zappa.debian.org>
-Received: from kokkonen.debian.org ([2001:41b8:202:deb:1a1a:0:52c3:4b61])
+From buildd at zandonai.debian.org Fri Jun 22 05:03:08 2012
+Return-path: <buildd at zandonai.debian.org>
+Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=kokkonen.debian.org,
- EMAIL=hostmaster at kokkonen.debian.org (verified)
+ CN=merikanto.debian.org,
+ EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o4-0002ES-8M
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:00 +0000
-Received: from [148.100.96.103] (helo=zappa.debian.org)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1U-0005Uh-DY
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:03:08 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=zappa.debian.org, EMAIL=hostmaster at zappa.debian.org (verified)
- by kokkonen.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o3-0004xE-32; Sat, 12 May 2012 07:31:59 +0000
-Received: from buildd by zappa.debian.org with local (Exim 4.72)
- (envelope-from <buildd at zappa.debian.org>)
- id 1ST6o1-00055e-1w; Sat, 12 May 2012 07:31:57 +0000
-Message-Id: <E1ST6o1-00055e-1w at zappa.debian.org>
+ CN=zandonai.debian.org,
+ EMAIL=hostmaster at zandonai.debian.org (verified)
+ by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
+ (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1S-0001aA-9V; Fri, 22 Jun 2012 05:03:06 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.72)
+ (envelope-from <buildd at zandonai.debian.org>)
+ id 1Shw1Q-0001Nu-U7; Fri, 22 Jun 2012 05:03:04 +0000
+Message-Id: <E1Shw1Q-0001Nu-U7 at zandonai.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:31:56 +0000
-From: buildd on zappa <buildd at zappa.debian.org>
+Date: Fri, 22 Jun 2012 05:03:04 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
To: aurelien at aurel32.net,phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on s390x (dist=sid)
-Key-Id: D1955623
+Subject: Log for successful build of tabix_0.2.6-1 on s390x (dist=sid)
+Key-Id: BE1C5586
Delivered-To: logs at buildd.debian.org
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zappa.debian.org
+sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (s390x) 12 May 2012 07:28 ║
+║ tabix 0.2.6-1 (s390x) 22 Jun 2012 05:01 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: s390x
-Get:1 http://ftp.us.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.us.debian.org unstable/main Sources [6282 kB]
+Hit http://ftp.de.debian.org unstable InRelease
+Hit http://ftp.de.debian.org unstable/main Sources
+Hit http://ftp.de.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable InRelease
+Hit http://ftp.de.debian.org unstable/non-free Sources
+Hit http://ftp.de.debian.org unstable/main s390x Packages
Ign http://incoming.debian.org InRelease
-Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:7 http://ftp.us.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.us.debian.org unstable/non-free Sources [96.6 kB]
-Get:9 http://ftp.us.debian.org unstable/main s390x Packages [5725 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:12 http://incoming.debian.org unstable/main s390x Packages [5725 kB]
-Get:13 http://ftp.us.debian.org unstable/contrib s390x Packages [36.6 kB]
-Ign http://ftp.us.debian.org unstable/contrib TranslationIndex
-Get:14 http://ftp.us.debian.org unstable/main TranslationIndex [2295 B]
-Get:15 http://ftp.us.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:16 http://ftp.us.debian.org unstable/main Translation-en [3953 kB]
-Get:17 http://incoming.debian.org unstable/contrib s390x Packages [36.6 kB]
-Ign http://incoming.debian.org unstable/contrib TranslationIndex
-Get:18 http://incoming.debian.org unstable/main TranslationIndex [2295 B]
-Get:19 http://incoming.debian.org Sources [43.6 kB]
-Get:20 http://incoming.debian.org Packages [767 kB]
-Get:21 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:22 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.7 MB in 1min 28s (381 kB/s)
+Hit http://ftp.de.debian.org unstable/contrib s390x Packages
+Hit http://incoming.debian.org unstable/main Sources
+Hit http://incoming.debian.org unstable/contrib Sources
+Hit http://incoming.debian.org unstable/non-free Sources
+Hit http://incoming.debian.org unstable/main s390x Packages
+Hit http://incoming.debian.org unstable/contrib s390x Packages
+Get:1 http://incoming.debian.org Release.gpg [836 B]
+Get:2 http://incoming.debian.org Release [1601 B]
+Get:3 http://incoming.debian.org Sources [63.5 kB]
+Get:4 http://incoming.debian.org Packages [839 kB]
+Fetched 905 kB in 4s (202 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -85,11 +77,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (379 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 0s (69.6 kB/s)
Download complete and in download only mode
Check arch
@@ -109,12 +101,12 @@ Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 48 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -123,13 +115,13 @@ Checking correctness of dependencies...
Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-libc6-dev: already installed (2.13-30)
-gcc: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-4 >= 4:4.4.3 is satisfied)
+libc6-dev: already installed (2.13-32)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.2 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -139,7 +131,7 @@ Reading state information...
The following extra packages will be installed:
bsdmainutils file gettext gettext-base groff-base html2text intltool-debian
libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
- libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
@@ -151,116 +143,109 @@ The following NEW packages will be installed:
intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
libmagic1 libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
zlib1g-dev
-The following packages will be upgraded:
- zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 21 newly installed, 0 to remove and 59 not upgraded.
Need to get 10.4 MB of archives.
-After this operation, 27.9 MB of additional disk space will be used.
-Get:1 http://ftp.us.debian.org/debian/ unstable/main zlib1g s390x 1:1.2.7.dfsg-1 [92.6 kB]
-Get:2 http://ftp.us.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
-Get:3 http://ftp.us.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-7 [26.6 kB]
-Get:4 http://ftp.us.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
-Get:5 http://ftp.us.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
-Get:6 http://ftp.us.debian.org/debian/ unstable/main libxml2 s390x 2.7.8.dfsg-9 [895 kB]
-Get:7 http://ftp.us.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:8 http://ftp.us.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.2-1 [2104 kB]
-Get:9 http://ftp.us.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
-Get:10 http://ftp.us.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:11 http://ftp.us.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-7 [157 kB]
-Get:12 http://ftp.us.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.1 [214 kB]
-Get:13 http://ftp.us.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
-Get:14 http://ftp.us.debian.org/debian/ unstable/main man-db s390x 2.6.1-2 [1070 kB]
-Get:15 http://ftp.us.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
-Get:16 http://ftp.us.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-7 [155 kB]
-Get:17 http://ftp.us.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:18 http://ftp.us.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-7 [2030 kB]
-Get:19 http://ftp.us.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:20 http://ftp.us.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://ftp.us.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://ftp.us.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-1 [219 kB]
+After this operation, 28.0 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.1-1 [40.5 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-9 [26.8 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 5.11-1 [256 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390x 1:8.30-5 [254 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-4 [901 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.32.3-1 [2105 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.5-1 [151 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-9 [158 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.3 [215 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.21-7 [1187 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.2-1 [1069 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main file s390x 5.11-1 [53.9 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.1.1-9 [156 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.1.1-9 [2037 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-2 [220 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 10.4 MB in 10s (1008 kB/s)
-(Reading database ... 10861 files and directories currently installed.)
-Preparing to replace zlib1g:s390x 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_s390x.deb) ...
-Unpacking replacement zlib1g:s390x ...
-Setting up zlib1g:s390x (1:1.2.7.dfsg-1) ...
+Fetched 10.4 MB in 7s (1312 kB/s)
Selecting previously unselected package libpipeline1:s390x.
-(Reading database ... 10861 files and directories currently installed.)
+(Reading database ... 10804 files and directories currently installed.)
Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.1-1_s390x.deb) ...
Selecting previously unselected package libasprintf0c2:s390x.
-Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-7_s390x.deb) ...
+Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package libmagic1:s390x.
Unpacking libmagic1:s390x (from .../libmagic1_5.11-1_s390x.deb) ...
Selecting previously unselected package libpcre3:s390x.
Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.30-5_s390x.deb) ...
Selecting previously unselected package libxml2:s390x.
-Unpacking libxml2:s390x (from .../libxml2_2.7.8.dfsg-9_s390x.deb) ...
+Unpacking libxml2:s390x (from .../libxml2_2.8.0+dfsg1-4_s390x.deb) ...
Selecting previously unselected package libffi5:s390x.
Unpacking libffi5:s390x (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
Selecting previously unselected package libglib2.0-0:s390x.
-Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.32.2-1_s390x.deb) ...
+Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.32.3-1_s390x.deb) ...
Selecting previously unselected package libcroco3:s390x.
Unpacking libcroco3:s390x (from .../libcroco3_0.6.5-1_s390x.deb) ...
Selecting previously unselected package libunistring0:s390x.
Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
Selecting previously unselected package libgettextpo0:s390x.
-Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-7_s390x.deb) ...
+Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_s390x.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390x.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_s390x.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_s390x.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_s390x.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_s390x.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_s390x.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_s390x.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_s390x.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:s390x.
-Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_s390x.deb) ...
+Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-2_s390x.deb) ...
Setting up libpipeline1:s390x (1.2.1-1) ...
-Setting up libasprintf0c2:s390x (0.18.1.1-7) ...
+Setting up libasprintf0c2:s390x (0.18.1.1-9) ...
Setting up libmagic1:s390x (5.11-1) ...
Setting up libpcre3:s390x (1:8.30-5) ...
-Setting up libxml2:s390x (2.7.8.dfsg-9) ...
+Setting up libxml2:s390x (2.8.0+dfsg1-4) ...
Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.32.2-1) ...
+Setting up libglib2.0-0:s390x (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:s390x (0.6.5-1) ...
Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:s390x (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-2) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 47 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 59 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.2 g++-4.6_4.6.3-4 gcc-4.6_4.6.3-4 libc6-dev_2.13-30 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-4 linux-libc-dev_3.2.15-1
-Package versions: apt_0.8.15.10 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-4 cpp-4.6_4.6.3-4 dash_0.5.7-3 debconf_1.5.42 debconf-i18n_1.5.42 debfoster_2.7-1.1+b1 debhelper_9.20120509 debian-archive-keyring_2010.08.28 debianutils_4.3 diffutils_1:3.2-3 dpkg_1.16.2 dpkg-dev_1.16.2 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-4 g++-4.6_4.6.3-4 gcc_4:4.6.3-4 gcc-4.4-base_4.4.7-1 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.3-4 gcc-4.6-base_4.6.3-4 gcc-4.7-base_4.7.0-3 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-30 libc-dev-bin_2.13-30 libc6_2.13-30 libc6-dev_2.13-30 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.2 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-3 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-3 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4+b1 libmpfr4_3.1.0-4 libncurses5_5.9-6 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-8 libss2_1.42.2-2 libstdc++6_4.7.0-3 libstdc++6-4.6-dev_4.6.3-4 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-6 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.15-1 login_1:4.1.5-1 lsb-base_4.1+Debian1 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-30 ncurses-base_5.9-6 ncurses-bin_5.9-6 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012b-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.18-1
+Package versions: apt_0.9.5.1 base-files_6.9 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5+b1 bzip2_1.0.6-1 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.43 debconf-i18n_1.5.43 debfoster_2.7-1.1+b1 debhelper_9.20120608 debian-archive-keyring_2012.3 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-5 gcc_4:4.6.3-6 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-9 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15+b1 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-7 libapt-pkg4.12_0.9.5.1 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-7 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.3 libffi5_3.0.10-3+b1 libfile-fcntllock-perl_0.14-1 libgc1c2_1:7.1-8+b1 libgcc1_1:4.7.0-9 libgdbm3_1.8.3-10+b1 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-1.1 libgomp1_4.7.0-9 liblocale-gettext-perl_1.05-7+b2 liblzma5_5.1.1alpha+20110809-3+b1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4+b1 libmpfr4_3.1.0-5 libncurses5_5.9-7 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8+b1 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libslang2_2.2.4-10 libss2_1.42.2-2 libstdc++6_4.7.0-9 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7+b2 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5+b1 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.18-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian4 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-10 perl-base_5.14.2-10 perl-modules_5.14.2-10 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9+b1 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3+b1 zlib1g_1:1.2.7.dfsg-2 zlib1g-dev_1:1.2.7.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -271,15 +256,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -289,46 +272,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture s390x
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
-gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -368,9 +351,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-s390x-C5IdGN/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-s390x-Ab_5il/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -380,59 +363,56 @@ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabi
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org> >../tabix_0.2.5-3_s390x.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../tabix_0.2.6-1_s390x.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0731
+Build finished at 20120622-0503
-tabix_0.2.5-3_s390x.changes:
+tabix_0.2.6-1_s390x.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: s390x
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
-Maintainer: s390/s390x Build Daemon (zappa) <buildd_s390x-zappa at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 93f16c05a556c3ef46908176c21e20869e8433f4 64548 tabix_0.2.5-3_s390x.deb
+ 5868010210f329e235d0cc30389b24259dbb8502 65430 tabix_0.2.6-1_s390x.deb
Checksums-Sha256:
- 6939b8482e986245ac097894a96bf9ee899ceddc648ca5bd41e98405813d6d52 64548 tabix_0.2.5-3_s390x.deb
+ 4aca1c87b2bbb4710fee71dc379da3d8b4da52a610edcf896c1a4c285d590916 65430 tabix_0.2.6-1_s390x.deb
Files:
- ae9e3f2b87131c0f823948b5276ad3d6 64548 science optional tabix_0.2.5-3_s390x.deb
+ 9fee3f6a1f2629071f3a5d5d9d31d4a7 65430 science optional tabix_0.2.6-1_s390x.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_s390x.deb
+tabix_0.2.6-1_s390x.deb
───────────────────────
new debian package, version 2.0.
- size 64548 bytes: control archive= 994 bytes.
+ size 65430 bytes: control archive= 993 bytes.
781 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: s390x
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 168
@@ -448,26 +428,26 @@ tabix_0.2.5-3_s390x.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/bin/
--rwxr-xr-x root/root 31152 2012-05-12 07:31 ./usr/bin/bgzip
--rwxr-xr-x root/root 84680 2012-05-12 07:31 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:31 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/tabix/
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
-drwxr-xr-x root/root 0 2012-05-12 07:31 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
-lrwxrwxrwx root/root 0 2012-05-12 07:31 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/bin/
+-rwxr-xr-x root/root 31168 2012-06-22 05:02 ./usr/bin/bgzip
+-rwxr-xr-x root/root 84696 2012-06-22 05:02 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:02 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+drwxr-xr-x root/root 0 2012-06-22 05:02 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2012-06-22 05:02 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -481,7 +461,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-ae763de0-fb43-4c01-9f39-df27379b7df0/build/buildd-tabix_0.2.5-3-s390x-C5IdGN
+Purging /var/lib/schroot/mount/sid-s390x-sbuild-e0ad626a-ac17-4ff3-bf12-8e26b6561b27/sid-s390x-sbuild/build/buildd-tabix_0.2.6-1-s390x-Ab_5il
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -489,18 +469,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: s390x
-Build-Space: 1984
-Build-Time: 30
+Build-Space: 1968
+Build-Time: 17
Distribution: sid
-Install-Time: 47
-Job: tabix_0.2.5-3
+Install-Time: 20
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 183
-Source-Version: 0.2.5-3
-Space: 1984
+Package-Time: 65
+Source-Version: 0.2.6-1
+Space: 1968
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0731
-Build needed 00:03:03, 1984k disc space
-Signature with key 'D1955623' requested:
+Finished at 20120622-0503
+Build needed 00:01:05, 1968k disc space
+Signature with key 'BE1C5586' requested:
diff --git a/sparc.log b/sparc.log
index 2404f09..70336bd 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,4 +1,4 @@
-From buildd at schroeder.debian.org Sat May 12 07:32:56 2012
+From buildd at schroeder.debian.org Fri Jun 22 05:09:54 2012
Return-path: <buildd at schroeder.debian.org>
Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
@@ -6,63 +6,58 @@ Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
EMAIL=hostmaster at merikanto.debian.org (verified)
by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1ST6oy-0002M4-14
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:56 +0000
+ id 1Shw82-0006Ec-0y
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:09:54 +0000
Received: from [2001:b68:ff:5:203:baff:fe5a:53a5] (helo=schroeder.debian.org)
from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
CN=schroeder.debian.org,
EMAIL=hostmaster at schroeder.debian.org (verified)
by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
(Exim 4.72) (envelope-from <buildd at schroeder.debian.org>)
- id 1ST6ox-00068j-6c
- for logs at buildd.debian.org; Sat, 12 May 2012 07:32:55 +0000
+ id 1Shw80-0001oG-H0
+ for logs at buildd.debian.org; Fri, 22 Jun 2012 05:09:52 +0000
Received: from buildd by schroeder.debian.org with local (Exim 4.72)
(envelope-from <buildd at schroeder.debian.org>)
- id 1ST6ov-00086f-G4; Sat, 12 May 2012 07:32:53 +0000
-Message-Id: <E1ST6ov-00086f-G4 at schroeder.debian.org>
+ id 1Shw7y-0007q2-Ie; Fri, 22 Jun 2012 05:09:50 +0000
+Message-Id: <E1Shw7y-0007q2-Ie at schroeder.debian.org>
MIME-Version: 1.0
Content-Transfer-Encoding: binary
X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sat, 12 May 2012 07:32:53 +0000
+Date: Fri, 22 Jun 2012 05:09:50 +0000
From: buildd on schroeder <buildd at schroeder.debian.org>
To: logs at buildd.debian.org,buildd-admin at schroeder.debian.org
-Subject: Log for successful build of tabix_0.2.5-3 on sparc (dist=sid)
+Subject: Log for successful build of tabix_0.2.6-1 on sparc (dist=sid)
Key-Id: 24E4F805
Delivered-To: logs at buildd.debian.org
sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on schroeder.debian.org
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-3 (sparc) 12 May 2012 07:29 ║
+║ tabix 0.2.6-1 (sparc) 22 Jun 2012 05:06 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-3
-Source Version: 0.2.5-3
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Architecture: sparc
-Get:1 http://ftp.hr.debian.org unstable InRelease [233 kB]
-Get:2 http://incoming.debian.org unstable InRelease [233 kB]
-Get:3 http://ftp.hr.debian.org unstable/main Sources [6282 kB]
+Get:1 http://ftp.hr.debian.org unstable InRelease [234 kB]
+Get:2 http://incoming.debian.org unstable InRelease [234 kB]
+Get:3 http://ftp.hr.debian.org unstable/main Sources [6326 kB]
Ign http://incoming.debian.org InRelease
Get:4 http://incoming.debian.org Release.gpg [836 B]
-Get:5 http://incoming.debian.org Release [1601 B]
-Get:6 http://incoming.debian.org unstable/main Sources [6282 kB]
-Get:7 http://ftp.hr.debian.org unstable/contrib Sources [54.7 kB]
-Get:8 http://ftp.hr.debian.org unstable/non-free Sources [96.6 kB]
-Get:9 http://ftp.hr.debian.org unstable/main sparc Packages [5852 kB]
-Get:10 http://ftp.hr.debian.org unstable/contrib sparc Packages [37.1 kB]
-Get:11 http://ftp.hr.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:12 http://ftp.hr.debian.org unstable/main Translation-en [3953 kB]
-Get:13 http://incoming.debian.org unstable/contrib Sources [54.7 kB]
-Get:14 http://incoming.debian.org unstable/non-free Sources [96.6 kB]
-Get:15 http://incoming.debian.org unstable/main sparc Packages [5852 kB]
-Get:16 http://incoming.debian.org unstable/contrib sparc Packages [37.1 kB]
-Get:17 http://incoming.debian.org unstable/contrib Translation-en [37.0 kB]
-Get:18 http://incoming.debian.org unstable/main Translation-en [3953 kB]
-Get:19 http://incoming.debian.org Sources [43.6 kB]
-Get:20 http://incoming.debian.org Packages [767 kB]
-Ign http://incoming.debian.org Translation-en
-Fetched 33.9 MB in 1min 19s (429 kB/s)
+Get:5 http://incoming.debian.org unstable/main Sources [6326 kB]
+Get:6 http://ftp.hr.debian.org unstable/contrib Sources [55.2 kB]
+Get:7 http://ftp.hr.debian.org unstable/non-free Sources [97.5 kB]
+Get:8 http://ftp.hr.debian.org unstable/main sparc Packages [5943 kB]
+Get:9 http://ftp.hr.debian.org unstable/contrib sparc Packages [37.5 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [55.2 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [97.5 kB]
+Get:12 http://incoming.debian.org unstable/main sparc Packages [5943 kB]
+Get:13 http://incoming.debian.org unstable/contrib sparc Packages [37.5 kB]
+Get:14 http://incoming.debian.org Release [1601 B]
+Get:15 http://incoming.debian.org Sources [63.5 kB]
+Get:16 http://incoming.debian.org Packages [840 kB]
+Fetched 26.3 MB in 1min 37s (271 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -83,11 +78,11 @@ Building dependency tree...
Reading state information...
NOTICE: 'tabix' packaging is maintained in the 'Git' version control system at:
git://git.debian.org/debian-med/tabix.git
-Need to get 60.5 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (dsc) [1313 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (tar) [54.2 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.5-3 (diff) [4989 B]
-Fetched 60.5 kB in 0s (75.1 kB/s)
+Need to get 61.2 kB of source archives.
+Get:1 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (dsc) [1976 B]
+Get:2 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (tar) [54.4 kB]
+Get:3 http://incoming.debian.org/buildd-unstable/ tabix 0.2.6-1 (diff) [4868 B]
+Fetched 61.2 kB in 1s (53.6 kB/s)
Download complete and in download only mode
Check arch
@@ -101,18 +96,18 @@ Check arch
Build-Depends: build-essential, fakeroot
Checking for already installed dependencies...
build-essential: already installed (11.5)
-fakeroot: already installed (1.18.3-1)
+fakeroot: already installed (1.18.4-2)
Checking for dependency conflicts...
Installing positive dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 26 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 10 not upgraded.
Checking correctness of dependencies...
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -121,38 +116,38 @@ Checking correctness of dependencies...
Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
Checking for already installed dependencies...
-base-files: already installed (6.7)
+base-files: already installed (6.11)
base-passwd: already installed (3.5.24)
bash: already installed (4.2-2)
-coreutils: already installed (8.13-3.1)
+coreutils: already installed (8.13-3.2)
dash: already installed (0.5.7-3)
-debianutils: already installed (4.3)
+debianutils: already installed (4.3.1)
diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.3)
-e2fsprogs: already installed (1.42.2-2)
+dpkg: already installed (1.16.4.3)
+e2fsprogs: already installed (1.42.4-3)
findutils: already installed (4.4.2-4)
-grep: already installed (2.11-3)
+grep: already installed (2.12-2)
gzip: already installed (1.4-5)
hostname: already installed (3.11)
-ncurses-base: already installed (5.9-7)
-ncurses-bin: already installed (5.9-7)
-perl-base: already installed (5.14.2-9)
-sed: already installed (4.2.1-9)
-login: already installed (1:4.1.5-1)
-sysvinit-utils: already installed (2.88dsf-22.1)
-sysvinit: already installed (2.88dsf-22.1)
+ncurses-base: already installed (5.9-9)
+ncurses-bin: already installed (5.9-9)
+perl-base: already installed (5.14.2-11)
+sed: already installed (4.2.1-10)
+login: already installed (1:4.1.5.1-1)
+sysvinit-utils: already installed (2.88dsf-27)
+sysvinit: already installed (2.88dsf-27)
tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-4)
-mount: already installed (2.20.1-4)
-util-linux: already installed (2.20.1-4)
-libc6-dev: already installed (2.13-32)
-libc6-dev-sparc64: already installed (2.13-32)
-gcc: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-5 >= 4:4.4.3 is satisfied)
+bsdutils: already installed (1:2.20.1-5)
+mount: already installed (2.20.1-5)
+util-linux: already installed (2.20.1-5)
+libc6-dev: already installed (2.13-33)
+libc6-dev-sparc64: already installed (2.13-33)
+gcc: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
+g++: already installed (4:4.6.3-6 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.3 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.16.4.3 >= 1.13.5 is satisfied)
debhelper: missing
-Using default version 9.20120509
+Using default version 9.20120608
zlib1g-dev: missing
Checking for dependency conflicts...
Installing positive dependencies: debhelper zlib1g-dev
@@ -176,114 +171,114 @@ The following NEW packages will be installed:
zlib1g-dev
The following packages will be upgraded:
zlib1g
-1 upgraded, 21 newly installed, 0 to remove and 25 not upgraded.
-Need to get 9774 kB of archives.
-After this operation, 25.7 MB of additional disk space will be used.
-Get:1 http://ftp.hr.debian.org/debian/ unstable/main zlib1g sparc 1:1.2.7.dfsg-1 [86.3 kB]
+1 upgraded, 21 newly installed, 0 to remove and 9 not upgraded.
+Need to get 9819 kB of archives.
+After this operation, 25.9 MB of additional disk space will be used.
+Get:1 http://ftp.hr.debian.org/debian/ unstable/main zlib1g sparc 1:1.2.7.dfsg-12 [86.7 kB]
Get:2 http://ftp.hr.debian.org/debian/ unstable/main libpipeline1 sparc 1.2.1-1 [35.8 kB]
-Get:3 http://ftp.hr.debian.org/debian/ unstable/main libasprintf0c2 sparc 0.18.1.1-7 [26.3 kB]
+Get:3 http://ftp.hr.debian.org/debian/ unstable/main libasprintf0c2 sparc 0.18.1.1-9 [26.5 kB]
Get:4 http://ftp.hr.debian.org/debian/ unstable/main libmagic1 sparc 5.11-1 [249 kB]
Get:5 http://ftp.hr.debian.org/debian/ unstable/main libpcre3 sparc 1:8.30-5 [246 kB]
-Get:6 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.7.8.dfsg-9 [820 kB]
+Get:6 http://ftp.hr.debian.org/debian/ unstable/main libxml2 sparc 2.8.0+dfsg1-4 [827 kB]
Get:7 http://ftp.hr.debian.org/debian/ unstable/main libffi5 sparc 3.0.10-3 [22.7 kB]
-Get:8 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.32.2-1 [1924 kB]
+Get:8 http://ftp.hr.debian.org/debian/ unstable/main libglib2.0-0 sparc 2.32.3-1 [1926 kB]
Get:9 http://ftp.hr.debian.org/debian/ unstable/main libcroco3 sparc 0.6.5-1 [135 kB]
Get:10 http://ftp.hr.debian.org/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
-Get:11 http://ftp.hr.debian.org/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-7 [128 kB]
-Get:12 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.1 [205 kB]
+Get:11 http://ftp.hr.debian.org/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-9 [129 kB]
+Get:12 http://ftp.hr.debian.org/debian/ unstable/main bsdmainutils sparc 9.0.3 [206 kB]
Get:13 http://ftp.hr.debian.org/debian/ unstable/main groff-base sparc 1.21-7 [1123 kB]
-Get:14 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.1-2 [1031 kB]
+Get:14 http://ftp.hr.debian.org/debian/ unstable/main man-db sparc 2.6.2-1 [1032 kB]
Get:15 http://ftp.hr.debian.org/debian/ unstable/main file sparc 5.11-1 [52.7 kB]
-Get:16 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-7 [130 kB]
+Get:16 http://ftp.hr.debian.org/debian/ unstable/main gettext-base sparc 0.18.1.1-9 [148 kB]
Get:17 http://ftp.hr.debian.org/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:18 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-7 [1885 kB]
+Get:18 http://ftp.hr.debian.org/debian/ unstable/main gettext sparc 0.18.1.1-9 [1893 kB]
Get:19 http://ftp.hr.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:20 http://ftp.hr.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:21 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20120509 [694 kB]
-Get:22 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.7.dfsg-1 [211 kB]
+Get:21 http://ftp.hr.debian.org/debian/ unstable/main debhelper all 9.20120608 [700 kB]
+Get:22 http://ftp.hr.debian.org/debian/ unstable/main zlib1g-dev sparc 1:1.2.7.dfsg-12 [211 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 9774 kB in 8s (1120 kB/s)
-(Reading database ... 11087 files and directories currently installed.)
-Preparing to replace zlib1g:sparc 1:1.2.6.dfsg-2 (using .../zlib1g_1%3a1.2.7.dfsg-1_sparc.deb) ...
+Fetched 9819 kB in 9s (1080 kB/s)
+(Reading database ... 11059 files and directories currently installed.)
+Preparing to replace zlib1g:sparc 1:1.2.7.dfsg-11 (using .../zlib1g_1%3a1.2.7.dfsg-12_sparc.deb) ...
Unpacking replacement zlib1g:sparc ...
-Setting up zlib1g:sparc (1:1.2.7.dfsg-1) ...
+Setting up zlib1g:sparc (1:1.2.7.dfsg-12) ...
Selecting previously unselected package libpipeline1:sparc.
-(Reading database ... 11087 files and directories currently installed.)
+(Reading database ... 11059 files and directories currently installed.)
Unpacking libpipeline1:sparc (from .../libpipeline1_1.2.1-1_sparc.deb) ...
Selecting previously unselected package libasprintf0c2:sparc.
-Unpacking libasprintf0c2:sparc (from .../libasprintf0c2_0.18.1.1-7_sparc.deb) ...
+Unpacking libasprintf0c2:sparc (from .../libasprintf0c2_0.18.1.1-9_sparc.deb) ...
Selecting previously unselected package libmagic1:sparc.
Unpacking libmagic1:sparc (from .../libmagic1_5.11-1_sparc.deb) ...
Selecting previously unselected package libpcre3:sparc.
Unpacking libpcre3:sparc (from .../libpcre3_1%3a8.30-5_sparc.deb) ...
Selecting previously unselected package libxml2:sparc.
-Unpacking libxml2:sparc (from .../libxml2_2.7.8.dfsg-9_sparc.deb) ...
+Unpacking libxml2:sparc (from .../libxml2_2.8.0+dfsg1-4_sparc.deb) ...
Selecting previously unselected package libffi5:sparc.
Unpacking libffi5:sparc (from .../libffi5_3.0.10-3_sparc.deb) ...
Selecting previously unselected package libglib2.0-0:sparc.
-Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.32.2-1_sparc.deb) ...
+Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.32.3-1_sparc.deb) ...
Selecting previously unselected package libcroco3:sparc.
Unpacking libcroco3:sparc (from .../libcroco3_0.6.5-1_sparc.deb) ...
Selecting previously unselected package libunistring0:sparc.
Unpacking libunistring0:sparc (from .../libunistring0_0.9.3-5_sparc.deb) ...
Selecting previously unselected package libgettextpo0:sparc.
-Unpacking libgettextpo0:sparc (from .../libgettextpo0_0.18.1.1-7_sparc.deb) ...
+Unpacking libgettextpo0:sparc (from .../libgettextpo0_0.18.1.1-9_sparc.deb) ...
Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_sparc.deb) ...
+Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_sparc.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_sparc.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.1-2_sparc.deb) ...
+Unpacking man-db (from .../man-db_2.6.2-1_sparc.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_sparc.deb) ...
Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-7_sparc.deb) ...
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_sparc.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-7_sparc.deb) ...
+Unpacking gettext (from .../gettext_0.18.1.1-9_sparc.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120509_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
Selecting previously unselected package zlib1g-dev:sparc.
-Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.7.dfsg-1_sparc.deb) ...
+Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_sparc.deb) ...
Setting up libpipeline1:sparc (1.2.1-1) ...
-Setting up libasprintf0c2:sparc (0.18.1.1-7) ...
+Setting up libasprintf0c2:sparc (0.18.1.1-9) ...
Setting up libmagic1:sparc (5.11-1) ...
Setting up libpcre3:sparc (1:8.30-5) ...
-Setting up libxml2:sparc (2.7.8.dfsg-9) ...
+Setting up libxml2:sparc (2.8.0+dfsg1-4) ...
Setting up libffi5:sparc (3.0.10-3) ...
-Setting up libglib2.0-0:sparc (2.32.2-1) ...
+Setting up libglib2.0-0:sparc (2.32.3-1) ...
No schema files found: doing nothing.
Setting up libcroco3:sparc (0.6.5-1) ...
Setting up libunistring0:sparc (0.9.3-5) ...
-Setting up libgettextpo0:sparc (0.18.1.1-7) ...
-Setting up bsdmainutils (9.0.1) ...
+Setting up libgettextpo0:sparc (0.18.1.1-9) ...
+Setting up bsdmainutils (9.0.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-7) ...
-Setting up man-db (2.6.1-2) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
-Setting up gettext-base (0.18.1.1-7) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-7) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120509) ...
-Setting up zlib1g-dev:sparc (1:1.2.7.dfsg-1) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:sparc (1:1.2.7.dfsg-12) ...
Removing negative dependencies:
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 25 not upgraded.
+0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
Checking correctness of dependencies...
Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.22-6 dpkg-dev_1.16.3 g++-4.6_4.6.3-5 gcc-4.6_4.6.3-5 libc6-dev_2.13-32 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 linux-libc-dev_3.2.16-1
-Package versions: apt_0.9.2 base-files_6.7 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 coreutils_8.13-3.1 cpp_4:4.6.3-5 cpp-4.6_4.6.3-5 dash_0.5.7-3 debconf_1.5.42 debfoster_2.7-1.1 debhelper_9.20120509 debian-archive-keyring_2012.1 debianutils_4.3 diffutils_1:3.2-6 dpkg_1.16.3 dpkg-dev_1.16.3 e2fslibs_1.42.2-2 e2fsprogs_1.42.2-2 fakeroot_1.18.3-1 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-5 g++-4.6_4.6.3-5 gcc_4:4.6.3-5 gcc-4.6_4.6.3-5 gcc-4.6-base_4.6.3-5 gcc-4.7-base_4.7.0-7 gettext_0.18.1.1-7 gettext-base_0.18.1.1-7 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.11-3 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22.1 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libapt-pkg4.12_0.9.2 libasprintf0c2_0.18.1.1-7 libattr1_1:2.4.46-5 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libc-bin_2.13-32 libc-dev-bin_2.13-32 libc6_2.13-32 libc6-dev_2.13-32 libc6-dev-sparc64_2.13-32 libc6-sparc64_2.13-32 libclass-isa-perl_0.36-3 libcomerr2_1.42.2-2 libcroco3_0.6.5-1 libdb5.1_5.1.29-1 libdpkg-perl_1.16.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-1+b1 libgc1c2_1:7.1-8 libgcc1_1:4.7.0-7 libgdbm3_1.8.3-10 libgettextpo0_0.18.1.1-7 libglib2.0-0_2.32.2-1 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.7.0-7 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-7 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-4 libsemanage-common_2.1.6-5 libsemanage1_2.1.6-5 libsepol1_2.1.4-3 libss2_1.42.2-2 libstdc++6_4.7.0-7 libstdc++6-4.6-dev_4.6.3-5 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-21 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libxml2_2.7.8.dfsg-9 linux-libc-dev_3.2.16-1 login_1:4.1.5-1 lsb-base_4.1+Debian2 make_3.81-8.2 man-db_2.6.1-2 mawk_1.3.3-17 mount_2.20.1-4 multiarch-support_2.13-32 ncurses-base_5.9-7 ncurses-bin_5.9-7 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-9 sensible-utils_0.0.6 sudo_1.8.3p2-1 sysv-rc_2.88dsf-22.1 sysvinit_2.88dsf-22.1 sysvinit-utils_2.88dsf-22.1 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-4 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-1 zlib1g-dev_1:1.2.7.dfsg-1
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 gcc-4.6_4.6.3-7 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 linux-libc-dev_3.2.20-1
+Package versions: apt_0.9.6 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.6.3-6 cpp-4.6_4.6.3-7 dash_0.5.7-3 debconf_1.5.43 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.6.3-6 g++-4.6_4.6.3-7 gcc_4:4.6.3-6 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.6 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libc6-dev-sparc64_2.13-33 libc6-sparc64_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-11 perl-base_5.14.2-11 perl-modules_5.14.2-11 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sed_4.2.1-10 sensible-utils_0.0.7 sudo_1.8.3p2-1.1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -294,15 +289,13 @@ Unpack source
─────────────
gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sat May 12 06:59:29 2012 UTC using DSA key ID C09FD35A
+gpgv: Signature made Fri Jun 22 04:31:27 2012 UTC using RSA key ID 2295D502
gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./tabix_0.2.5-3.dsc
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-3.debian.tar.gz
-dpkg-source: info: applying count-set-but-not-used.patch
+dpkg-source: warning: failed to verify signature on ./tabix_0.2.6-1.dsc
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
dpkg-source: info: applying use-dpkg-buildflags.patch
-dpkg-source: info: applying ld-as-needed.patch
Check disc space
────────────────
@@ -312,46 +305,46 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-3
- dpkg-source --before-build tabix-0.2.5
+dpkg-buildpackage: source version 0.2.6-1
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture sparc
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
-make[2]: Entering directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
+make[2]: Entering directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
knetfile.c: In function 'khttp_connect_file':
knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
knetfile.c: In function 'kftp_send_cmd':
knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
-gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
bgzip.c: In function 'main':
bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
bgzip.c: In function 'write_open':
bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
+make[2]: Leaving directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
@@ -391,9 +384,9 @@ dh binary-arch
dh_usrlocal -a
dh_link -a
debian/rules override_dh_compress
-make[1]: Entering directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
+make[1]: Entering directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
dh_compress --exclude=.tbi
-make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5'
+make[1]: Leaving directory `/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ/tabix-0.2.6'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
@@ -401,64 +394,62 @@ make[1]: Leaving directory `/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u/tabix-0.2.5
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
dh_installdeb -a
dh_gencontrol -a
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-3_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../tabix_0.2.5-3_sparc.changes
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org> >../tabix_0.2.6-1_sparc.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120512-0732
+Build finished at 20120622-0509
-tabix_0.2.5-3_sparc.changes:
+tabix_0.2.6-1_sparc.changes:
Format: 1.8
-Date: Fri, 11 May 2012 13:32:56 +0200
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: sparc
-Version: 0.2.5-3
+Version: 0.2.6-1
Distribution: sid
Urgency: low
Maintainer: sparc Build Daemon (schroeder) <buildd_sparc-schroeder at buildd.debian.org>
-Changed-By: Andreas Tille <tille at debian.org>
+Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
-Closes: 632150 670759
Changes:
- tabix (0.2.5-3) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * debian/patches/use-dpkg-buildflags.patch: Really enable hardening
- build flags (Thanks for the patch to Simon Ruderich <simon at ruderich.org>)
- Closes: #670759
- * debian/patches/ld-as-needed.patch: Enable building with --as-needed
- (Thanks to David Shorten <dpshorten at gmail.com> for the patch)
- Closes: #632150
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
- 47abde1553fc44eecfffd5ddfd6cb02b11b6c1c5 56544 tabix_0.2.5-3_sparc.deb
+ 0df01aacc31a3c466a8cbcb1e19c289e55997c51 56920 tabix_0.2.6-1_sparc.deb
Checksums-Sha256:
- 1f3963f4de4bbb3600695356897ed4b58def814d831523f67480ff71f1a9eabc 56544 tabix_0.2.5-3_sparc.deb
+ 7d9141a7bd85c9ba2e8051a26d6b04f8618fcc6386c479ac4950751486644426 56920 tabix_0.2.6-1_sparc.deb
Files:
- d5d2067f4f113459843d11770c7ecfc5 56544 science optional tabix_0.2.5-3_sparc.deb
+ 7cb8cf4fb592ebb06080722d7a0380de 56920 science optional tabix_0.2.6-1_sparc.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-3_sparc.deb
+tabix_0.2.6-1_sparc.deb
───────────────────────
new debian package, version 2.0.
- size 56544 bytes: control archive= 991 bytes.
+ size 56920 bytes: control archive= 990 bytes.
780 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-3
+ Version: 0.2.6-1
Architecture: sparc
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 147
+ Installed-Size: 156
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
@@ -471,26 +462,26 @@ tabix_0.2.5-3_sparc.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/bin/
--rwxr-xr-x root/root 26668 2012-05-12 07:32 ./usr/bin/bgzip
--rwxr-xr-x root/root 67924 2012-05-12 07:32 ./usr/bin/tabix
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2012-05-12 07:32 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/
--rw-r--r-- root/root 3487 2011-04-10 19:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1507 2012-05-12 06:57 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 2062 2012-05-12 06:57 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 811 2012-05-12 06:57 ./usr/share/doc/tabix/changelog.Debian.gz
--rw-r--r-- root/root 1169 2011-04-10 19:21 ./usr/share/doc/tabix/NEWS.gz
-drwxr-xr-x root/root 0 2012-05-12 07:32 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 3778 2010-12-08 17:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 259 2011-04-10 19:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
-lrwxrwxrwx root/root 0 2012-05-12 07:32 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/bin/
+-rwxr-xr-x root/root 26692 2012-06-22 05:09 ./usr/bin/bgzip
+-rwxr-xr-x root/root 76124 2012-06-22 05:09 ./usr/bin/tabix
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 05:09 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/doc/tabix/
+-rw-r--r-- root/root 3487 2012-06-18 10:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1546 2012-06-22 03:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 2160 2012-06-22 04:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 914 2012-06-22 04:14 ./usr/share/doc/tabix/changelog.Debian.gz
+-rw-r--r-- root/root 1169 2012-06-18 10:38 ./usr/share/doc/tabix/NEWS.gz
+drwxr-xr-x root/root 0 2012-06-22 05:09 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 3778 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 259 2012-06-18 10:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+lrwxrwxrwx root/root 0 2012-06-22 05:09 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -504,7 +495,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-ac17b5a3-fd7e-4752-9202-5527750d228b/build/buildd-tabix_0.2.5-3-sparc-p4lZ7u
+Purging /var/lib/schroot/mount/sid-sparc-sbuild-55aba36b-ca3a-4c9d-bb37-db52c5fd841d/build/buildd-tabix_0.2.6-1-sparc-FM0CKQ
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -512,18 +503,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: sparc
-Build-Space: 1552
+Build-Space: 1516
Build-Time: 36
Distribution: sid
-Install-Time: 60
-Job: tabix_0.2.5-3
+Install-Time: 59
+Job: tabix_0.2.6-1
Package: tabix
-Package-Time: 199
-Source-Version: 0.2.5-3
-Space: 1552
+Package-Time: 212
+Source-Version: 0.2.6-1
+Space: 1516
Status: successful
-Version: 0.2.5-3
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120512-0732
-Build needed 00:03:19, 1552k disc space
+Finished at 20120622-0509
+Build needed 00:03:32, 1516k disc space
Signature with key '24E4F805' requested:
--
Generic indexer for TAB-delimited genome position files.
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