[med-svn] r11813 - trunk/packages/rostlab/predictprotein/trunk/debian

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-07-16 11:32:08 +0000 (Mon, 16 Jul 2012)
New Revision: 11813

Modified:
   trunk/packages/rostlab/predictprotein/trunk/debian/changelog
   trunk/packages/rostlab/predictprotein/trunk/debian/control
   trunk/packages/rostlab/predictprotein/trunk/debian/copyright
Log:
added note about licensing of prosite_scan.pl in d/copyright

Modified: trunk/packages/rostlab/predictprotein/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/predictprotein/trunk/debian/changelog	2012-07-16 10:55:24 UTC (rev 11812)
+++ trunk/packages/rostlab/predictprotein/trunk/debian/changelog	2012-07-16 11:32:08 UTC (rev 11813)
@@ -1,8 +1,5 @@
-predictprotein (1.0.83-1) UNRELEASED; urgency=low
+predictprotein (1.0.84-1) UNRELEASED; urgency=low
 
-  * [lkajan at rostlab.org] PLEASE DO NOT UPLOAD
-    RELEASED FOR ROST LAB (NOT YET FOR THE WORLD)
-
   * Initial release (Closes: #680610)
 
  -- Laszlo Kajan <lkajan at rostlab.org>  Mon, 09 Jul 2012 14:42:39 +0200
@@ -10,13 +7,13 @@
 predictprotein (1.0.80-1) UNRELEASED; urgency=low
 
   * Removed profglobe.
-  * Fixed lowcompseg-renamed-to ncbi-seg issue.
+  * Fixed lowcompseg-renamed-to-ncbi-seg issue.
 
  -- Laszlo Kajan <lkajan at rostlab.org>  Fri, 06 Jul 2012 14:25:47 +0200
 
 predictprotein (1.0.79-1) UNRELEASED; urgency=low
 
-  * reprof integration moved to its own branch while experimental
+  * reprof integration moved to its own branch while experimental.
   * metadisorder a Suggests: because it is non-redistributable for all.
   * Removing disis Suggests per Burkhard's request: we do not trust the
     method any more, Yanay had some funny results with the packaged version.

Modified: trunk/packages/rostlab/predictprotein/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/predictprotein/trunk/debian/control	2012-07-16 10:55:24 UTC (rev 11812)
+++ trunk/packages/rostlab/predictprotein/trunk/debian/control	2012-07-16 11:32:08 UTC (rev 11813)
@@ -24,7 +24,7 @@
   * secondary structure
   * solvent accessibility
   * multiple sequence alignments
-  * PROSITE sequence motifs LOOK OUT LICENSE UNKNOWN
+  * PROSITE sequence motifs
   * low-complexity regions
   * nuclear localisation signals
   * regions lacking regular structure (NORS)

Modified: trunk/packages/rostlab/predictprotein/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/predictprotein/trunk/debian/copyright	2012-07-16 10:55:24 UTC (rev 11812)
+++ trunk/packages/rostlab/predictprotein/trunk/debian/copyright	2012-07-16 11:32:08 UTC (rev 11813)
@@ -9,6 +9,39 @@
            2012 Simon Domke <domkes at in.tum.de>
 License: GPL-3+
 
+Files: helper_apps/prosite_scan.pl
+Copyright:
+	2008 Guy Yachdav <gyachdav at rostlab.org> (modifications)
+	public-domain (original: ftp://lausanne.isb-sib.ch/pub/software/unix/prosite_scan/prosite_scan , author Kay Hofmann <kay.hofmann at uni-koeln.de>)
+License: public-domain and GPL-3+
+    Original source (available at ftp://lausanne.isb-sib.ch/pub/software/unix/prosite_scan/prosite_scan) in public domain:
+      http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-July/016408.html
+    On 14/07/12 21:51, Kay Hofmann wrote:
+    > Dear Lazlo,
+    > 
+    > Like all other software I have made available (so far), the script prosite_scan.pl that you refer to is in the public domain.
+    > Feel free to do with it whatever you like.
+    > 
+    > Best Wishes,
+    > 
+    > Kay
+    .
+    Any modification to this program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+    .
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+    .
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
+    .
+    On Debian systems, the complete text of the GNU General Public
+    License version 3 can be found in "/usr/share/common-licenses/GPL-3".
+
 Files: *
 Copyright: 2010 ROSTLAB
 License: GPL-3+