[med-svn] r11329 - in trunk/packages/circos/tags: . 0.61-1/debian 0.61-1/debian/patches
Olivier Sallou
osallou at alioth.debian.org
Thu Jun 14 11:46:14 UTC 2012
Author: osallou
Date: 2012-06-14 11:46:13 +0000 (Thu, 14 Jun 2012)
New Revision: 11329
Added:
trunk/packages/circos/tags/0.61-1/
trunk/packages/circos/tags/0.61-1/debian/README.Debian
trunk/packages/circos/tags/0.61-1/debian/changelog
trunk/packages/circos/tags/0.61-1/debian/control
trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc
trunk/packages/circos/tags/0.61-1/debian/patches/fix_examples
trunk/packages/circos/tags/0.61-1/debian/patches/series
trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts
Removed:
trunk/packages/circos/tags/0.61-1/debian/README.Debian
trunk/packages/circos/tags/0.61-1/debian/changelog
trunk/packages/circos/tags/0.61-1/debian/control
trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc
trunk/packages/circos/tags/0.61-1/debian/patches/series
trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts
Log:
[svn-buildpackage] Tagging circos 0.61-1
Deleted: trunk/packages/circos/tags/0.61-1/debian/README.Debian
===================================================================
--- trunk/packages/circos/trunk/debian/README.Debian 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/README.Debian 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,10 +0,0 @@
-Circos for Debian
------------------
-
-To test the installation of the package, go to a copy of the directory
-/usr/share/doc/circos/example and execute:
-
- circos -conf circos.conf
-
-The files ‘circos.svg’ and ‘circos.png’ will be regenerated, and can be
-compared to the originals.
Copied: trunk/packages/circos/tags/0.61-1/debian/README.Debian (from rev 11328, trunk/packages/circos/trunk/debian/README.Debian)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/README.Debian (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/README.Debian 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,15 @@
+Circos for Debian
+-----------------
+
+To test the installation of the package, go to a copy of the directory
+/usr/share/doc/circos/example and execute:
+
+ circos -conf circos.conf
+
+The files ‘circos.svg’ and ‘circos.png’ will be regenerated, and can be
+compared to the originals.
+
+Warning: Many example files are compressed in /usr/share/doc/circos/examples/*.
+Running the example program will failed due to the compressed files. To execute
+ the sample program, you should first uncompress those files.
+
Deleted: trunk/packages/circos/tags/0.61-1/debian/changelog
===================================================================
--- trunk/packages/circos/trunk/debian/changelog 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/changelog 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,21 +0,0 @@
-circos (0.55-3) UNRELEASED; urgency=low
-
- [ Charles Plessy ]
- * renamed debian/upstream-metadata.yaml to debian/upstream
-
- [ Andreas Tille ]
- * debian/upstream: enhanced citation information
-
- -- Andreas Tille <tille at debian.org> Sun, 01 Apr 2012 08:08:55 +0200
-
-circos (0.55-2) unstable; urgency=low
-
- * Add pre-depends on dpkg to support xz compression (required for Ubuntu)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 19 Oct 2011 14:16:18 +0200
-
-circos (0.55-1) unstable; urgency=low
-
- * First debian import (Closes: #632174)
-
- -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 29 Jun 2011 12:04:57 +0200
Copied: trunk/packages/circos/tags/0.61-1/debian/changelog (from rev 11328, trunk/packages/circos/trunk/debian/changelog)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/changelog (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/changelog 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,24 @@
+circos (0.61-1) unstable; urgency=low
+
+ [ Olivier Sallou ]
+ * New upstream release
+
+ [ Charles Plessy ]
+ * renamed debian/upstream-metadata.yaml to debian/upstream
+
+ [ Andreas Tille ]
+ * debian/upstream: enhanced citation information
+
+ -- Olivier Sallou <osallou at debian.org> Thu, 14 Jun 2012 12:56:33 +0200
+
+circos (0.55-2) unstable; urgency=low
+
+ * Add pre-depends on dpkg to support xz compression (required for Ubuntu)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 19 Oct 2011 14:16:18 +0200
+
+circos (0.55-1) unstable; urgency=low
+
+ * First debian import (Closes: #632174)
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Wed, 29 Jun 2011 12:04:57 +0200
Deleted: trunk/packages/circos/tags/0.61-1/debian/control
===================================================================
--- trunk/packages/circos/trunk/debian/control 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/control 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,40 +0,0 @@
-Source: circos
-Section: science
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>,
-DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 8.0.0)
-Standards-Version: 3.9.2
-Homepage: http://circos.ca/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/circos/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos/
-
-Package: circos
-Architecture: all
-Pre-Depends: dpkg (>= 1.15.6)
-Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), otf-symbols-circos, fonts-cmu,
- libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5),
- libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl,
- libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl,
- libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl,
- libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl
-Recommends: circos-tools
-Description: Package for visualizing data and information
- Circos visualizes data in a circular layout — this makes Circos
- ideal for exploring relationships between objects or positions.
- Circos is ideal for creating publication-quality infographics
- and illustrations with a high data-to-ink ratio, richly layered
- data and pleasant symmetries. You have fine control each element
- in the figure to tailor its focus points and detail to your audience.
-
-Package: otf-symbols-circos
-Section: fonts
-Architecture: all
-Pre-Depends: dpkg (>= 1.15.6)
-Depends: ${misc:Depends}
-Description: Fonts used by default in Circos
- Circos visualizes data in a circular layout — this makes Circos
- ideal for exploring relationships between objects or positions.
- .
- This package contains a set of font usedby default with Circos.
Copied: trunk/packages/circos/tags/0.61-1/debian/control (from rev 11328, trunk/packages/circos/trunk/debian/control)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/control (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/control 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,41 @@
+Source: circos
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>,
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8.0.0)
+Standards-Version: 3.9.2
+Homepage: http://circos.ca/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/circos/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos/
+
+Package: circos
+Architecture: all
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), otf-symbols-circos, fonts-cmu,
+ libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5),
+ libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl,
+ libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl,
+ libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl,
+ libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl,
+ libtext-format-perl, libfont-ttf-perl
+Recommends: circos-tools
+Description: Package for visualizing data and information
+ Circos visualizes data in a circular layout — this makes Circos
+ ideal for exploring relationships between objects or positions.
+ Circos is ideal for creating publication-quality infographics
+ and illustrations with a high data-to-ink ratio, richly layered
+ data and pleasant symmetries. You have fine control each element
+ in the figure to tailor its focus points and detail to your audience.
+
+Package: otf-symbols-circos
+Section: fonts
+Architecture: all
+Pre-Depends: dpkg (>= 1.15.6)
+Depends: ${misc:Depends}
+Description: Fonts used by default in Circos
+ Circos visualizes data in a circular layout — this makes Circos
+ ideal for exploring relationships between objects or positions.
+ .
+ This package contains a set of font usedby default with Circos.
Deleted: trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc
===================================================================
--- trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,31 +0,0 @@
-Description: Add Debian directories in search path
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Last-Update: 2011-08-01
---- a/lib/Circos/Configuration.pm
-+++ b/lib/Circos/Configuration.pm
-@@ -370,6 +370,7 @@
- #$OPT{configfile} = $file;
-
- my @configpath = (
-+ "/etc/circos",
- dirname($file),
- dirname($file)."/etc",
- "$FindBin::RealBin/etc",
---- a/lib/Circos/Utils.pm
-+++ b/lib/Circos/Utils.pm
-@@ -310,6 +310,7 @@
- } else {
- # look for the file elsewhere
- @dirs = (
-+ "/usr/share/circos",
- "$FindBin::RealBin/../",
- "$FindBin::RealBin/",
- "$FindBin::RealBin/etc",
---- a/etc/makehusteps
-+++ b/etc/makehusteps
-@@ -1,4 +1,4 @@
--#!/bin/env perl
-+#!/usr/bin/env perl
-
- use strict;
- use Math::Round qw(round);
Copied: trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc (from rev 11328, trunk/packages/circos/trunk/debian/patches/configpath_add_etc)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/configpath_add_etc 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,32 @@
+Description: Add Debian directories in search path
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Last-Update: 2011-08-01
+--- a/lib/Circos/Configuration.pm
++++ b/lib/Circos/Configuration.pm
+@@ -569,6 +569,7 @@
+ }
+
+ my @configpath = (
++ "/etc/circos",
+ dirname($file),
+ dirname($file)."/etc",
+ "$FindBin::RealBin/etc",
+--- a/lib/Circos/Utils.pm
++++ b/lib/Circos/Utils.pm
+@@ -429,7 +429,7 @@
+ %params = @_;
+ }
+ # look for the file in various directories
+- my @dir_1 = (getcwd,$FindBin::RealBin);
++ my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos");
+ my @dir_2 = qw(. .. ../..);
+ my @dir_3 = qw(. etc data);
+
+--- a/etc/makehuesteps
++++ b/etc/makehuesteps
+@@ -1,4 +1,4 @@
+-#!/bin/env perl
++#!/usr/bin/env perl
+
+ use strict;
+ use Math::Round qw(round);
Copied: trunk/packages/circos/tags/0.61-1/debian/patches/fix_examples (from rev 11328, trunk/packages/circos/trunk/debian/patches/fix_examples)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/patches/fix_examples (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/fix_examples 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,40 @@
+Subject: change path to conf file for examples
+Description: etc sub directory is hard coded
+ in example conf files. In Debian conf files are
+ in /etc/circos. This path is already added to search
+ path.
+Author: Olivier Sallou <osallou at debian.org>
+Last-Updated: 14/06/12
+--- a/example/etc/circos.conf
++++ b/example/etc/circos.conf
+@@ -246,16 +246,16 @@
+ <<include ticks.conf>>
+
+ <image>
+-<<include etc/image.conf>>
++<<include image.conf>>
+ </image>
+
+-# includes etc/colors.conf
+-# etc/fonts.conf
+-# etc/patterns.conf
+-<<include etc/colors_fonts_patterns.conf>>
++# includes colors.conf
++# fonts.conf
++# patterns.conf
++<<include colors_fonts_patterns.conf>>
+
+ # system and debug settings
+-<<include etc/housekeeping.conf>>
++<<include housekeeping.conf>>
+
+ anti_aliasing* = no
+
+--- a/example/run
++++ b/example/run
+@@ -1,4 +1,4 @@
+ #!/bin/bash
+
+-../bin/circos -conf etc/circos.conf -debug_group summary,timer,textplace > run.out
++circos -conf etc/circos.conf -debug_group summary,timer,textplace > run.out
+
Deleted: trunk/packages/circos/tags/0.61-1/debian/patches/series
===================================================================
--- trunk/packages/circos/trunk/debian/patches/series 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/series 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,3 +0,0 @@
-use_ttf_fonts
-debianpackaging
-configpath_add_etc
Copied: trunk/packages/circos/tags/0.61-1/debian/patches/series (from rev 11328, trunk/packages/circos/trunk/debian/patches/series)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/patches/series (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/series 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,4 @@
+use_ttf_fonts
+debianpackaging
+configpath_add_etc
+fix_examples
Deleted: trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts
===================================================================
--- trunk/packages/circos/trunk/debian/patches/use_ttf_fonts 2012-06-13 18:16:09 UTC (rev 11327)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts 2012-06-14 11:46:13 UTC (rev 11329)
@@ -1,46 +0,0 @@
-Author: Olivier Sallou <olivier.sallou at irisa.fr>
-Description: fonts-cmu use ttf, so update conf accordingly
-Last-Update: 2011-09-08
---- a/etc/fonts.conf
-+++ b/etc/fonts.conf
-@@ -2,24 +2,24 @@
- # Helvetica has been replaced by Computer Modern
- # http://cm-unicode.sourceforge.net/
-
--serif_roman = fonts/modern/cmunrm.otf
--serif_default = fonts/modern/cmunrm.otf
--serif_normal = fonts/modern/cmunrm.otf
--serif_bold = fonts/modern/cmunbx.otf
--serif_italic = fonts/modern/cmunui.otf
-+serif_roman = fonts/modern/cmunrm.ttf
-+serif_default = fonts/modern/cmunrm.ttf
-+serif_normal = fonts/modern/cmunrm.ttf
-+serif_bold = fonts/modern/cmunbx.ttf
-+serif_italic = fonts/modern/cmunui.ttf
-
--light = fonts/modern/cmunss.otf
--normal = fonts/modern/cmunss.otf
--default = fonts/modern/cmunss.otf
--condensed = fonts/modern/cmunss.otf
--semibold = fonts/modern/cmunbsr.otf
--condensedbold = fonts/modern/cmunbsr.otf
--bold = fonts/modern/cmunsx.otf
-+light = fonts/modern/cmunss.ttf
-+normal = fonts/modern/cmunss.ttf
-+default = fonts/modern/cmunss.ttf
-+condensed = fonts/modern/cmunss.ttf
-+semibold = fonts/modern/cmunbsr.ttf
-+condensedbold = fonts/modern/cmunbsr.ttf
-+bold = fonts/modern/cmunsx.ttf
-
--mono = fonts/modern/cmuntt.otf
--fixed = fonts/modern/cmuntt.otf
--mono_light = fonts/modern/cmunbtl.otf
--fixed_light = fonts/modern/cmunbtl.otf
-+mono = fonts/modern/cmuntt.ttf
-+fixed = fonts/modern/cmuntt.ttf
-+mono_light = fonts/modern/cmunbtl.ttf
-+fixed_light = fonts/modern/cmunbtl.ttf
-
- # All wingding and webding fonts have been replaced
- # by a GPL glyph font designed by Martin Krzywinski
Copied: trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts (from rev 11328, trunk/packages/circos/trunk/debian/patches/use_ttf_fonts)
===================================================================
--- trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts (rev 0)
+++ trunk/packages/circos/tags/0.61-1/debian/patches/use_ttf_fonts 2012-06-14 11:46:13 UTC (rev 11329)
@@ -0,0 +1,67 @@
+Author: Olivier Sallou <olivier.sallou at irisa.fr>
+Description: fonts-cmu use ttf, so update conf accordingly
+Last-Update: 2011-09-08
+--- a/etc/fonts.conf
++++ b/etc/fonts.conf
+@@ -27,18 +27,18 @@
+ # CMU Typewriter Regular, when rotated. For this reason, TTF versions
+ # of these fonts are used.
+
+-serif = fonts/modern/cmunrm.otf # CMUSerif-Roman
+-serif_roman = fonts/modern/cmunrm.otf # CMUSerif-Roman
+-serif_default = fonts/modern/cmunrm.otf # CMUSerif-Roman
+-serif_normal = fonts/modern/cmunrm.otf # CMUSerif-Roman
+-serif_light = fonts/modern/cmunrm.otf # CMUSerif-Roman
+-serif_bold = fonts/modern/cmunbx.otf # CMUSerif-Bold
+-serif_italic = fonts/modern/cmunui.otf # CMUSerif-Italic
+-serif_bolditalic = fonts/modern/cmunbi.otf # CMUSerif-BoldItalic
+-serif_italicbold = fonts/modern/cmunbi.otf # CMUSerif-BoldItalic
+-serif_condensed = fonts/modern/cmunssdc.otf # CMUSerif-DemiCondensed
+-serif_condensedbold = fonts/modern/cmunssdc.otf # CMUSerif-DemiCondensed
+-serif_boldcondensed = fonts/modern/cmunssdc.otf # CMUSerif-DemiCondensed
++serif = fonts/modern/cmunrm.ttf # CMUSerif-Roman
++serif_roman = fonts/modern/cmunrm.ttf # CMUSerif-Roman
++serif_default = fonts/modern/cmunrm.ttf # CMUSerif-Roman
++serif_normal = fonts/modern/cmunrm.ttf # CMUSerif-Roman
++serif_light = fonts/modern/cmunrm.ttf # CMUSerif-Roman
++serif_bold = fonts/modern/cmunbx.ttf # CMUSerif-Bold
++serif_italic = fonts/modern/cmunui.ttf # CMUSerif-Italic
++serif_bolditalic = fonts/modern/cmunbi.ttf # CMUSerif-BoldItalic
++serif_italicbold = fonts/modern/cmunbi.ttf # CMUSerif-BoldItalic
++serif_condensed = fonts/modern/cmunssdc.ttf # CMUSerif-DemiCondensed
++serif_condensedbold = fonts/modern/cmunssdc.ttf # CMUSerif-DemiCondensed
++serif_boldcondensed = fonts/modern/cmunssdc.ttf # CMUSerif-DemiCondensed
+
+ sans_serif = fonts/modern/cmunbmr.ttf # CMUBright-Roman
+ sans = fonts/modern/cmunbmr.ttf # CMUBright-Roman
+@@ -46,20 +46,20 @@
+ light = fonts/modern/cmunbmr.ttf # CMUBright-Roman
+ normal = fonts/modern/cmunbmr.ttf # CMUBright-Roman
+ default = fonts/modern/cmunbmr.ttf # CMUBright-Roman
+-semibold = fonts/modern/cmunbsr.otf # CMUBright-Semibold
+-bold = fonts/modern/cmunbbx.otf # CMUBright-Bold
+-italic = fonts/modern/cmunbmo.otf # CMUBright-Oblique
+-bolditalic = fonts/modern/cmunbxo.otf # CMUBright-BoldOblique
+-italicbold = fonts/modern/cmunbxo.otf # CMUBright-BoldOblique
++semibold = fonts/modern/cmunbsr.ttf # CMUBright-Semibold
++bold = fonts/modern/cmunbbx.ttf # CMUBright-Bold
++italic = fonts/modern/cmunbmo.ttf # CMUBright-Oblique
++bolditalic = fonts/modern/cmunbxo.ttf # CMUBright-BoldOblique
++italicbold = fonts/modern/cmunbxo.ttf # CMUBright-BoldOblique
+
+-condensed = fonts/modern/cmunssdc.otf # CMUSansSerif-DemiCondensed
+-condensedbold = fonts/modern/cmunssdc.otf # CMUSansSerif-DemiCondensed
+-boldcondensed = fonts/modern/cmunssdc.otf # CMUSansSerif-DemiCondensed
++condensed = fonts/modern/cmunssdc.ttf # CMUSansSerif-DemiCondensed
++condensedbold = fonts/modern/cmunssdc.ttf # CMUSansSerif-DemiCondensed
++boldcondensed = fonts/modern/cmunssdc.ttf # CMUSansSerif-DemiCondensed
+
+ mono = fonts/modern/cmuntt.ttf # CMUTypewriter-Regular
+ fixed = fonts/modern/cmuntt.ttf # CMUTypewriter-Regular
+-mono_light = fonts/modern/cmunbtl.otf # CMUTypewriter-Light
+-fixed_light = fonts/modern/cmunbtl.otf # CMUTypewriter-Light
++mono_light = fonts/modern/cmunbtl.ttf # CMUTypewriter-Light
++fixed_light = fonts/modern/cmunbtl.ttf # CMUTypewriter-Light
+
+ # All wingding and webding fonts have been replaced
+ # by a GPL glyph font designed by Martin Krzywinski
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