[med-svn] [SCM] r-bioc-edger branch, meta, updated. meta/2.4.0_dfsg-1-1-g574f195
Charles Plessy
plessy at debian.org
Mon Mar 5 06:54:07 UTC 2012
The following commit has been merged in the meta branch:
commit 574f1950d6654297cd7cc76b803ddfbc0e73091a
Author: Charles Plessy <plessy at debian.org>
Date: Mon Mar 5 15:53:09 2012 +0900
Uploaded r-bioc-edger_2.4.3~dfsg-1_amd64.changes.
diff --git a/amd64.changes b/amd64.changes
index 7837d83..6134d5e 100644
--- a/amd64.changes
+++ b/amd64.changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Fri, 18 Nov 2011 13:47:35 +0900
+Date: Mon, 05 Mar 2012 15:10:28 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.4.0~dfsg-1
+Version: 2.4.3~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,41 +14,45 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.4.0~dfsg-1) unstable; urgency=low
+ r-bioc-edger (2.4.3~dfsg-1) unstable; urgency=low
.
- [16d49d0] Bioconductor release 2.9.
- [0e79ff9] Removed User's Guide (no source) in agreement with the
- upstream authors, see “README.Debian”.
+ 04cc8b8 New upstream 2.4.3.
+ c494484 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 27bae62 Corrected URLs, paths, and mangles in watch file.
+ d6029fb Provide a more stable URL to the manual.
+ 09acea4 Obtain ${R:Depends} directly throuhg r-base-dev.
+ 5df05c4 Conforms to Policy 3.9.3.
+ 2b01b4a Verbose Debhelper.
Checksums-Sha1:
- 3662fd778a4f5071960d42ac71b03e4efed35a79 2072 r-bioc-edger_2.4.0~dfsg-1.dsc
- 3f303b9663aea9f97f80eb24e8dcb54d4d54c186 401286 r-bioc-edger_2.4.0~dfsg.orig.tar.gz
- aea3ebd0959d1746cc0100c7d1d99e9d66ed82c7 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
- 18ae45dd85bd1ea791463dcfe9cee71e76e77e1f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
+ 7147330da5f4ed0095b289131a19e29b5ad12bf5 2081 r-bioc-edger_2.4.3~dfsg-1.dsc
+ e1ecd1dc7e041f87b7f3e8839b0f4ef7d263df42 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 8783839cafece97982f54ebd91412799c2720df2 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
+ 3b84ce146f85549c990324306a1cb624e9fe4492 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
Checksums-Sha256:
- eeb40f986afae0cd32021434ce991d127e2f7e4f2698edac9c05c0b376bb3f24 2072 r-bioc-edger_2.4.0~dfsg-1.dsc
- c4da36c545073c39ceb4aba0679cf3716f28703103f671f7848c696e229cb9a1 401286 r-bioc-edger_2.4.0~dfsg.orig.tar.gz
- ad8f1cbeef39c3d03913855190a1b229bb4edc5f8ecdb4c21972f5eb7f9ccaae 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
- 7fd61329bf9e28d1bcefa5ad84b7cc8521f809bbade112ed524c51d23ccf740f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
+ 964e2018a05ffdcab95ae72275413b2f7f74b12627f58179a9ed3b3ea929e604 2081 r-bioc-edger_2.4.3~dfsg-1.dsc
+ a0bf6e486a09d95bb310df6ae45648b617f89866a04a68267c0e805b970855ef 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 4096fc107e01494fa9942849a8077a1279312b123530ef04841ddb4026f01b31 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
+ 1f3dd397ce30784f39e797f97faf890753edbbeb683dd2ac857fb45ae6ea1742 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
Files:
- 87cc8a8497e8802b5350c02c08eefbff 2072 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.dsc
- abf5fc133e11e5f84d9e406e71754e3d 401286 gnu-r optional r-bioc-edger_2.4.0~dfsg.orig.tar.gz
- 5b3e4ed543ad5d478185953b602a9aab 2997 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.diff.gz
- 3402e7c58237bf5e7bae4da54521ccde 544866 gnu-r optional r-bioc-edger_2.4.0~dfsg-1_all.deb
+ 2c0e2d07b23b45fdbea1a76c33a96735 2081 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.dsc
+ 64e7be8d28c5395539f19a912d536c7c 401057 gnu-r optional r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 3f14d6575d27c4b84d4af286d9018736 3057 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.diff.gz
+ 2295d2d1d1530ef4f6f5a63e08f27b00 545386 gnu-r optional r-bioc-edger_2.4.3~dfsg-1_all.deb
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diff --git a/amd64.log b/amd64.log
index ac0ead1..66c4823 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,18 +1,18 @@
-sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on anx191
+sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ r-bioc-edger 2.4.0~dfsg-1 (amd64) 18 Nov 2011 13:51 ║
+║ r-bioc-edger 2.4.3~dfsg-1 (amd64) 05 Mar 2012 15:12 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-edger
-Version: 2.4.0~dfsg-1
-Source Version: 2.4.0~dfsg-1
+Version: 2.4.3~dfsg-1
+Source Version: 2.4.3~dfsg-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-ZqRJjb/r-bioc-edger-2.4.0~dfsg' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/r-bioc-edger-ZqRJjb' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-8c157305-d343-47b1-9c99-84eeb2dae6c2' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-eKzS5D/r-bioc-edger-2.4.3~dfsg' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/r-bioc-edger-eKzS5D' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-6a048ffc-cecd-4251-8870-6edc837a4030' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
@@ -21,6 +21,7 @@ I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-8c
Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Hit http://ftp.jp.debian.org sid/main Translation-en
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -35,14 +36,14 @@ Reading state information...
Local sources
─────────────
-r-bioc-edger_2.4.0~dfsg-1.dsc exists in .; copying to chroot
+r-bioc-edger_2.4.3~dfsg-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-G_G3Lt/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-ZjWwS5/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -56,9 +57,9 @@ Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
-dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-iI1vHB/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
+Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-limma
+Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-limma
+dpkg-deb: building package `sbuild-build-depends-r-bioc-edger-dummy' in `/«BUILDDIR»/resolver-HElqF6/apt_archive/sbuild-build-depends-r-bioc-edger-dummy.deb'.
OK
Reading package lists...
@@ -73,7 +74,7 @@ Reading state information...
The following extra packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
@@ -81,22 +82,26 @@ The following extra packages will be installed:
libsm6 libthai-data libthai0 libtiff4 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
- r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common
+ r-base-dev r-bioc-limma tcl8.5 tk8.5 ttf-dejavu-core unzip x11-common
xdg-utils zip zlib1g-dev
Suggested packages:
devscripts dh-make curl defoma gettext-doc gfortran-multilib gfortran-doc
gfortran-4.6-multilib gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc
ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
- r-mathlib r-base-html tclreadline gvfs-bin
+ r-mathlib r-base-html texlive-base texlive-latex-base
+ texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
+ texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
+ texi2html tclreadline gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-recommended r-doc-html
- xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
+ xterm x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
+ libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
cdbs debhelper dpatch file fontconfig fontconfig-config gettext gettext-base
gfortran gfortran-4.6 groff-base html2text intltool-debian libblas-dev
- libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
+ libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1 libffi5
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg8
libjpeg8-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
@@ -105,81 +110,121 @@ The following NEW packages will be installed:
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev r-bioc-limma sbuild-build-depends-r-bioc-edger-dummy tcl8.5 tk8.5
- ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
-debconf: delaying package configuration, since apt-utils is not installed
+ ttf-dejavu-core unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/58.4 MB of archives.
-After this operation, 129 MB of additional disk space will be used.
+Need to get 38.4 MB/59.8 MB of archives.
+After this operation, 128 MB of additional disk space will be used.
+Get:1 http://ftp.jp.debian.org/debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
+Get:2 http://ftp.jp.debian.org/debian/ sid/main libmagic1 amd64 5.10-1 [248 kB]
+Get:3 http://ftp.jp.debian.org/debian/ sid/main libglib2.0-0 amd64 2.30.2-6 [1846 kB]
+Get:4 http://ftp.jp.debian.org/debian/ sid/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
+Get:5 http://ftp.jp.debian.org/debian/ sid/main libcroco3 amd64 0.6.4-2 [150 kB]
+Get:6 http://ftp.jp.debian.org/debian/ sid/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
+Get:7 http://ftp.jp.debian.org/debian/ sid/main fontconfig-config all 2.8.0-3.1 [219 kB]
+Get:8 http://ftp.jp.debian.org/debian/ sid/main libfontconfig1 amd64 2.8.0-3.1 [283 kB]
+Get:9 http://ftp.jp.debian.org/debian/ sid/main libgfortran3 amd64 4.6.3-1 [358 kB]
+Get:10 http://ftp.jp.debian.org/debian/ sid/main x11-common all 1:7.6+12 [283 kB]
+Get:11 http://ftp.jp.debian.org/debian/ sid/main libjpeg8 amd64 8d-1 [134 kB]
+Get:12 http://ftp.jp.debian.org/debian/ sid/main libpixman-1-0 amd64 0.24.4-1 [406 kB]
+Get:13 http://ftp.jp.debian.org/debian/ sid/main libxcb1 amd64 1.8-2 [49.7 kB]
+Get:14 http://ftp.jp.debian.org/debian/ sid/main libxcb-render0 amd64 1.8-2 [18.3 kB]
+Get:15 http://ftp.jp.debian.org/debian/ sid/main libxcb-shm0 amd64 1.8-2 [10.0 kB]
+Get:16 http://ftp.jp.debian.org/debian/ sid/main libcairo2 amd64 1.10.2-6.2 [933 kB]
+Get:17 http://ftp.jp.debian.org/debian/ sid/main libthai-data all 0.1.17-1 [205 kB]
+Get:18 http://ftp.jp.debian.org/debian/ sid/main libthai0 amd64 0.1.17-1 [44.8 kB]
+Get:19 http://ftp.jp.debian.org/debian/ sid/main fontconfig amd64 2.8.0-3.1 [335 kB]
+Get:20 http://ftp.jp.debian.org/debian/ sid/main libtiff4 amd64 3.9.6-1 [199 kB]
+Get:21 http://ftp.jp.debian.org/debian/ sid/main man-db amd64 2.6.1-1 [1057 kB]
+Get:22 http://ftp.jp.debian.org/debian/ sid/main file amd64 5.10-1 [53.0 kB]
+Get:23 http://ftp.jp.debian.org/debian/ sid/main cdbs all 0.4.105 [78.7 kB]
+Get:24 http://ftp.jp.debian.org/debian/ sid/main debhelper all 9.20120115 [693 kB]
+Get:25 http://ftp.jp.debian.org/debian/ sid/main dpatch all 2.0.35 [95.2 kB]
+Get:26 http://ftp.jp.debian.org/debian/ sid/main gfortran-4.6 amd64 4.6.3-1 [5564 kB]
+Get:27 http://ftp.jp.debian.org/debian/ sid/main gfortran amd64 4:4.6.2-4 [1130 B]
+Get:28 http://ftp.jp.debian.org/debian/ sid/main libbz2-dev amd64 1.0.6-1 [32.1 kB]
+Get:29 http://ftp.jp.debian.org/debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
+Get:30 http://ftp.jp.debian.org/debian/ sid/main zlib1g-dev amd64 1:1.2.6.dfsg-2 [213 kB]
+Get:31 http://ftp.jp.debian.org/debian/ sid/main libpng12-dev amd64 1.2.47-1 [267 kB]
+Get:32 http://ftp.jp.debian.org/debian/ sid/main libreadline6-dev amd64 6.2-8 [264 kB]
+Get:33 http://ftp.jp.debian.org/debian/ sid/main libreadline-dev amd64 6.2-8 [890 B]
+Get:34 http://ftp.jp.debian.org/debian/ sid/main xdg-utils all 1.1.0~rc1+git20111210-6 [83.7 kB]
+Get:35 http://ftp.jp.debian.org/debian/ sid/main tcl8.5 amd64 8.5.11-1 [1633 kB]
+Get:36 http://ftp.jp.debian.org/debian/ sid/main tk8.5 amd64 8.5.11-1 [1183 kB]
+Get:37 http://ftp.jp.debian.org/debian/ sid/main r-base-core amd64 2.14.2-1 [20.2 MB]
+Get:38 http://ftp.jp.debian.org/debian/ sid/main r-base-dev all 2.14.2-1 [3894 B]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 38.4 MB in 6s (6076 kB/s)
Selecting previously unselected package libpipeline1.
-(Reading database ... 10825 files and directories currently installed.)
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ...
+(Reading database ... 10886 files and directories currently installed.)
+Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
+Selecting previously unselected package libmagic1.
+Unpacking libmagic1 (from .../libmagic1_5.10-1_amd64.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
+Selecting previously unselected package libffi5.
+Unpacking libffi5 (from .../libffi5_3.0.10-3_amd64.deb) ...
Selecting previously unselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.8-1_amd64.deb) ...
+Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_amd64.deb) ...
Selecting previously unselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_amd64.deb) ...
+Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-7_amd64.deb) ...
Selecting previously unselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-2_amd64.deb) ...
+Unpacking libcroco3 (from .../libcroco3_0.6.4-2_amd64.deb) ...
Selecting previously unselected package libdatrie1.
-Unpacking libdatrie1 (from .../libdatrie1_0.2.5-2_amd64.deb) ...
+Unpacking libdatrie1 (from .../libdatrie1_0.2.5-3_amd64.deb) ...
Selecting previously unselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_amd64.deb) ...
Selecting previously unselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_amd64.deb) ...
-Selecting previously unselected package ucf.
-Unpacking ucf (from .../ucf_3.0025+nmu2_all.deb) ...
-Moving old data out of the way
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
-Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3_all.deb) ...
+Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
-Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3_amd64.deb) ...
+Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_amd64.deb) ...
Selecting previously unselected package libgfortran3.
-Unpacking libgfortran3 (from .../libgfortran3_4.6.2-4_amd64.deb) ...
+Unpacking libgfortran3 (from .../libgfortran3_4.6.3-1_amd64.deb) ...
Selecting previously unselected package x11-common.
-Unpacking x11-common (from .../x11-common_1%3a7.6+9_all.deb) ...
+Unpacking x11-common (from .../x11-common_1%3a7.6+12_all.deb) ...
Selecting previously unselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-2_amd64.deb) ...
+Selecting previously unselected package libjpeg8.
+Unpacking libjpeg8 (from .../libjpeg8_8d-1_amd64.deb) ...
Selecting previously unselected package libpixman-1-0.
-Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.0-1_amd64.deb) ...
+Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.4-1_amd64.deb) ...
Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ...
Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ...
Selecting previously unselected package libxcb1.
-Unpacking libxcb1 (from .../libxcb1_1.7-4_amd64.deb) ...
+Unpacking libxcb1 (from .../libxcb1_1.8-2_amd64.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-4_amd64.deb) ...
Selecting previously unselected package libxcb-render0.
-Unpacking libxcb-render0 (from .../libxcb-render0_1.7-4_amd64.deb) ...
+Unpacking libxcb-render0 (from .../libxcb-render0_1.8-2_amd64.deb) ...
Selecting previously unselected package libxcb-shm0.
-Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-4_amd64.deb) ...
+Unpacking libxcb-shm0 (from .../libxcb-shm0_1.8-2_amd64.deb) ...
Selecting previously unselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_amd64.deb) ...
Selecting previously unselected package libcairo2.
-Unpacking libcairo2 (from .../libcairo2_1.10.2-6.1_amd64.deb) ...
+Unpacking libcairo2 (from .../libcairo2_1.10.2-6.2_amd64.deb) ...
Selecting previously unselected package libthai-data.
-Unpacking libthai-data (from .../libthai-data_0.1.16-2_all.deb) ...
+Unpacking libthai-data (from .../libthai-data_0.1.17-1_all.deb) ...
Selecting previously unselected package libthai0.
-Unpacking libthai0 (from .../libthai0_0.1.16-2_amd64.deb) ...
+Unpacking libthai0 (from .../libthai0_0.1.17-1_amd64.deb) ...
Selecting previously unselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-3_amd64.deb) ...
Selecting previously unselected package fontconfig.
-Unpacking fontconfig (from .../fontconfig_2.8.0-3_amd64.deb) ...
+Unpacking fontconfig (from .../fontconfig_2.8.0-3.1_amd64.deb) ...
Selecting previously unselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.29.4-2_amd64.deb) ...
Selecting previously unselected package libpcrecpp0.
Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ...
Selecting previously unselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_amd64.deb) ...
-Selecting previously unselected package libjpeg8.
-Unpacking libjpeg8 (from .../libjpeg8_8c-2_amd64.deb) ...
Selecting previously unselected package libtiff4.
-Unpacking libtiff4 (from .../libtiff4_3.9.5-2_amd64.deb) ...
+Unpacking libtiff4 (from .../libtiff4_3.9.6-1_amd64.deb) ...
Selecting previously unselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ...
Selecting previously unselected package libxext6.
@@ -191,15 +236,13 @@ Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_amd64.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-3_amd64.deb) ...
-Selecting previously unselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.09-2_amd64.deb) ...
+Unpacking man-db (from .../man-db_2.6.1-1_amd64.deb) ...
Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.09-2_amd64.deb) ...
+Unpacking file (from .../archives/file_5.10-1_amd64.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_amd64.deb) ...
Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.99_all.deb) ...
+Unpacking cdbs (from .../archives/cdbs_0.4.105_all.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously unselected package gettext.
@@ -207,23 +250,23 @@ Unpacking gettext (from .../gettext_0.18.1.1-5_amd64.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.9.11_all.deb) ...
+Unpacking debhelper (from .../debhelper_9.20120115_all.deb) ...
Selecting previously unselected package dpatch.
-Unpacking dpatch (from .../archives/dpatch_2.0.33_all.deb) ...
+Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package gfortran-4.6.
-Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.2-4_amd64.deb) ...
+Unpacking gfortran-4.6 (from .../gfortran-4.6_4.6.3-1_amd64.deb) ...
Selecting previously unselected package gfortran.
-Unpacking gfortran (from .../gfortran_4%3a4.6.1-3_amd64.deb) ...
+Unpacking gfortran (from .../gfortran_4%3a4.6.2-4_amd64.deb) ...
Selecting previously unselected package libblas3gf.
Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2_amd64.deb) ...
Selecting previously unselected package libblas-dev.
Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2_amd64.deb) ...
Selecting previously unselected package libbz2-dev.
-Unpacking libbz2-dev (from .../libbz2-dev_1.0.5-7_amd64.deb) ...
+Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_amd64.deb) ...
Selecting previously unselected package libjpeg8-dev.
-Unpacking libjpeg8-dev (from .../libjpeg8-dev_8c-2_amd64.deb) ...
+Unpacking libjpeg8-dev (from .../libjpeg8-dev_8d-1_amd64.deb) ...
Selecting previously unselected package liblapack3gf.
Unpacking liblapack3gf (from .../liblapack3gf_3.3.1-1_amd64.deb) ...
Selecting previously unselected package liblapack-dev.
@@ -239,96 +282,96 @@ Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu1_amd64.deb) ...
Selecting previously unselected package libpcre3-dev.
Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_amd64.deb) ...
Selecting previously unselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
+Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_amd64.deb) ...
Selecting previously unselected package libpng12-dev.
-Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3_amd64.deb) ...
+Unpacking libpng12-dev (from .../libpng12-dev_1.2.47-1_amd64.deb) ...
Selecting previously unselected package libreadline6-dev.
-Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-7_amd64.deb) ...
+Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_amd64.deb) ...
Selecting previously unselected package libreadline-dev.
-Unpacking libreadline-dev (from .../libreadline-dev_6.2-7_amd64.deb) ...
+Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_amd64.deb) ...
Selecting previously unselected package zip.
Unpacking zip (from .../archives/zip_3.0-4_amd64.deb) ...
Selecting previously unselected package unzip.
Unpacking unzip (from .../archives/unzip_6.0-5_amd64.deb) ...
Selecting previously unselected package xdg-utils.
-Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2_all.deb) ...
+Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1+git20111210-6_all.deb) ...
Selecting previously unselected package tcl8.5.
-Unpacking tcl8.5 (from .../tcl8.5_8.5.10-1_amd64.deb) ...
+Unpacking tcl8.5 (from .../tcl8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package tk8.5.
-Unpacking tk8.5 (from .../tk8.5_8.5.10-1_amd64.deb) ...
+Unpacking tk8.5 (from .../tk8.5_8.5.11-1_amd64.deb) ...
Selecting previously unselected package r-base-core.
-Unpacking r-base-core (from .../r-base-core_2.14.0-1_amd64.deb) ...
+Unpacking r-base-core (from .../r-base-core_2.14.2-1_amd64.deb) ...
Selecting previously unselected package r-base-dev.
-Unpacking r-base-dev (from .../r-base-dev_2.14.0-1_all.deb) ...
+Unpacking r-base-dev (from .../r-base-dev_2.14.2-1_all.deb) ...
Selecting previously unselected package r-bioc-limma.
Unpacking r-bioc-limma (from .../r-bioc-limma_3.10.0-1_amd64.deb) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-edger-dummy.
Unpacking sbuild-build-depends-r-bioc-edger-dummy (from .../sbuild-build-depends-r-bioc-edger-dummy.deb) ...
-Setting up libpipeline1 (1.2.0-5) ...
+Setting up libpipeline1 (1.2.1-1) ...
+Setting up libmagic1 (5.10-1) ...
Setting up libpcre3 (8.12-4) ...
-Setting up libglib2.0-0 (2.28.8-1) ...
+Setting up libffi5 (3.0.10-3) ...
+Setting up libglib2.0-0 (2.30.2-6) ...
No schema files found: doing nothing.
-Setting up libxml2 (2.7.8.dfsg-5) ...
-Setting up libcroco3 (0.6.2-2) ...
-Setting up libdatrie1 (0.2.5-2) ...
+Setting up libxml2 (2.7.8.dfsg-7) ...
+Setting up libcroco3 (0.6.4-2) ...
+Setting up libdatrie1 (0.2.5-3) ...
Setting up libexpat1 (2.0.1-7.2) ...
Setting up libfreetype6 (2.4.8-1) ...
-Setting up ucf (3.0025+nmu2) ...
Setting up ttf-dejavu-core (2.33-2) ...
-Setting up fontconfig-config (2.8.0-3) ...
-Setting up libfontconfig1 (2.8.0-3) ...
-Setting up libgfortran3 (4.6.2-4) ...
-Setting up x11-common (1:7.6+9) ...
+Setting up fontconfig-config (2.8.0-3.1) ...
+Setting up libfontconfig1 (2.8.0-3.1) ...
+Setting up libgfortran3 (4.6.3-1) ...
+Setting up x11-common (1:7.6+12) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-2) ...
-Setting up libpixman-1-0 (0.24.0-1) ...
+Setting up libjpeg8 (8d-1) ...
+Setting up libpixman-1-0 (0.24.4-1) ...
Setting up libxau6 (1:1.0.6-4) ...
Setting up libxdmcp6 (1:1.1.0-4) ...
-Setting up libxcb1 (1.7-4) ...
+Setting up libxcb1 (1.8-2) ...
Setting up libx11-data (2:1.4.4-4) ...
Setting up libx11-6 (2:1.4.4-4) ...
-Setting up libxcb-render0 (1.7-4) ...
-Setting up libxcb-shm0 (1.7-4) ...
+Setting up libxcb-render0 (1.8-2) ...
+Setting up libxcb-shm0 (1.8-2) ...
Setting up libxrender1 (1:0.9.6-2) ...
-Setting up libcairo2 (1.10.2-6.1) ...
-Setting up libthai-data (0.1.16-2) ...
-Setting up libthai0 (0.1.16-2) ...
+Setting up libcairo2 (1.10.2-6.2) ...
+Setting up libthai-data (0.1.17-1) ...
+Setting up libthai0 (0.1.17-1) ...
Setting up libxft2 (2.2.0-3) ...
-Setting up fontconfig (2.8.0-3) ...
+Setting up fontconfig (2.8.0-3.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.29.4-2) ...
Setting up libpcrecpp0 (8.12-4) ...
Setting up libsm6 (2:1.2.0-2) ...
-Setting up libjpeg8 (8c-2) ...
-Setting up libtiff4 (3.9.5-2) ...
+Setting up libtiff4 (3.9.6-1) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxext6 (2:1.3.0-3) ...
Setting up libxss1 (1:1.2.1-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up groff-base (1.21-6) ...
-Setting up man-db (2.6.0.2-3) ...
+Setting up man-db (2.6.1-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.09-2) ...
-Setting up file (5.09-2) ...
+Setting up file (5.10-1) ...
Setting up gettext-base (0.18.1.1-5) ...
-Setting up cdbs (0.4.99) ...
+Setting up cdbs (0.4.105) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.9.11) ...
-Setting up dpatch (2.0.33) ...
-Setting up gfortran-4.6 (4.6.2-4) ...
-Setting up gfortran (4:4.6.1-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120115) ...
+Setting up dpatch (2.0.35) ...
+Setting up gfortran-4.6 (4.6.3-1) ...
+Setting up gfortran (4:4.6.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2.20110419-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
-Setting up libbz2-dev (1.0.5-7) ...
-Setting up libjpeg8-dev (8c-2) ...
+Setting up libbz2-dev (1.0.6-1) ...
+Setting up libjpeg8-dev (8d-1) ...
Setting up liblapack3gf (3.3.1-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.1-1) ...
@@ -340,22 +383,22 @@ Setting up libpaper1 (1.1.24+nmu1) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu1) ...
Setting up libpcre3-dev (8.12-4) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
-Setting up libpng12-dev (1.2.46-3) ...
-Setting up libreadline6-dev (6.2-7) ...
-Setting up libreadline-dev (6.2-7) ...
+Setting up zlib1g-dev (1:1.2.6.dfsg-2) ...
+Setting up libpng12-dev (1.2.47-1) ...
+Setting up libreadline6-dev (6.2-8) ...
+Setting up libreadline-dev (6.2-8) ...
Setting up zip (3.0-4) ...
Setting up unzip (6.0-5) ...
-Setting up xdg-utils (1.1.0~rc1-2) ...
-Setting up tcl8.5 (8.5.10-1) ...
+Setting up xdg-utils (1.1.0~rc1+git20111210-6) ...
+Setting up tcl8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
-Setting up tk8.5 (8.5.10-1) ...
+Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
-Setting up r-base-core (2.14.0-1) ...
+Setting up r-base-core (2.14.2-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
-Setting up r-base-dev (2.14.0-1) ...
+Setting up r-base-dev (2.14.2-1) ...
Setting up r-bioc-limma (3.10.0-1) ...
Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
@@ -364,8 +407,8 @@ Setting up sbuild-build-depends-r-bioc-edger-dummy (0.invalid.0) ...
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 2.6.39-bpo.2-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.90.20111025-1 dpkg-dev_1.16.1.1 g++-4.6_4.6.2-4 gcc-4.6_4.6.2-4 libc6-dev_2.13-21 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 linux-libc-dev_3.1.1-1
-Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binutils_2.21.90.20111025-1 bsdmainutils_8.2.3 bsdutils_1:2.19.1-5 build-essential_11.5 bzip2_1.0.5-7 cdbs_0.4.99 coreutils_8.13-3 cpp_4:4.6.1-3 cpp-4.6_4.6.2-4 dash_0.5.7-2 debconf_1.5.41 debfoster_2.7-1.1 debhelper_8.9.11 debian-archive-keyring_2010.08.28 debianutils_4.0.4 diffutils_1:3.2-1 dpatch_2.0.33 dpkg_1.16.1.1 dpkg-dev_1.16.1.1 e2fslibs_1.42~WIP-2011-10-16-1 e2fsprogs_1.42~WIP-2011-10-16-1 fakeroot_1.18.1-1 file_5.09-2 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.1-3 g++-4.6_4.6.2-4 gcc_4:4.6.1-3 gcc-4.6_4.6.2-4 gcc-4.6-base_4.6.2-4 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.1-3 gfortran-4.6_4.6.2-4 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.9-2 groff-base_1.21-6 gzip_1.4-2 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.13 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-4 libattr1_1:2.4.46-3 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.19.1-5 libbz2-1.0_1.0.5-7 libbz2-dev_1.0.5-7 libc-bin_2.13-21 libc-dev-bin_2.13-21 libc6_2.13-21 libc6-dev_2.13-21 libcairo2_1.10.2-6.1 libclass-isa-perl_0.36-2 libcomerr2_1.42~WIP-2011-10-16-1 libcroco3_0.6.2-2 libdatrie1_0.2.5-2 libdb5.1_5.1.25-11 libdpkg-perl_1.16.1.1 libexpat1_2.0.1-7.2 libfontconfig1_2.8.0-3 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.2-4 libgdbm3_1.8.3-10 libgfortran3_4.6.2-4 libglib2.0-0_2.28.8-1 libgmp10_2:5.0.2+dfsg-2 libgomp1_4.6.2-4 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8c-2 libjpeg8-dev_8c-2 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmount1_2.19.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-6 libpam-modules-bin_1.1.3-6 libpam-runtime_1.1.3-6 libpam0g_1.1.3-6 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.0-5 libpixman-1-0_0.24.0-1 libpng12-0_1.2.46-3 libpng12-dev_1.2.46-3 libpod-plainer-perl_1.03-1 libquadmath0_4.6.2-4 libreadline-dev_6.2-7 libreadline6_6.2-7 libreadline6-dev_6.2-7 libselinux1_2.1.0-4 libsepol1_2.1.0-1.1 libslang2_2.2.4-3 libsm6_2:1.2.0-2 libss2_1.42~WIP-2011-10-16-1 libstdc++6_4.6.2-4 libstdc++6-4.6-dev_4.6.2-4 libswitch-perl_2.16-2 libthai-data_0.1.16-2 libthai0_0.1.16-2 libtiff4_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-19 libuuid1_2.19.1-5 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.7-4 libxcb-shm0_1.7-4 libxcb1_1.7-4 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-5 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.1.1-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mount_2.19.1-5 multiarch-support_2.13-21 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.14.2-4 perl-base_5.14.2-4 perl-modules_5.14.2-4 po-debconf_1.0.16+nmu1 r-base-core_2.14.0-1 r-base-dev_2.14.0-1 r-bioc-limma_3.10.0-1 readline-common_6.2-7 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.13 sysvinit_2.88dsf-13.13 sysvinit-utils_2.88dsf-13.13 tar_1.26-3 tcl8.5_8.5.10-1 tk8.5_8.5.10-1 ttf-dejavu-core_2.33-2 tzdata_2011n-1 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.19.1-5 x11-common_1:7.6+9 xdg-utils_1.1.0~rc1-2 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.3-1 gcc-4.6_4.6.3-1 libc6-dev_2.13-27 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 linux-libc-dev_3.2.7-1
+Package versions: apt_0.8.15.9 base-files_6.7 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-4 build-essential_11.5 bzip2_1.0.6-1 cdbs_0.4.105 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.3-1 dash_0.5.7-3 debconf_1.5.41 debfoster_2.7-1.1 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debianutils_4.2.1 diffutils_1:3.2-2 dpatch_2.0.35 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42.1-2 e2fsprogs_1.42.1-2 fakeroot_1.18.2-1 file_5.10-1 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 g++_4:4.6.2-4 g++-4.6_4.6.3-1 gcc_4:4.6.2-4 gcc-4.6_4.6.3-1 gcc-4.6-base_4.6.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gfortran_4:4.6.2-4 gfortran-4.6_4.6.3-1 gnupg_1.4.12-3 gpgv_1.4.12-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-5 libattr1_1:2.4.46-5 libblas-dev_1.2.20110419-2 libblas3gf_1.2.20110419-2 libblkid1_2.20.1-4 libbz2-1.0_1.0.6-1 libbz2-dev_1.0.6-1 libc-bin_2.13-27 libc-dev-bin_2.13-27 libc6_2.13-27 libc6-dev_2.13-27 libcairo2_1.10.2-6.2 libclass-isa-perl_0.36-3 libcomerr2_1.42.1-2 libcroco3_0.6.4-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-1 libdpkg-perl_1.16.1.2 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgc1c2_1:7.1-8 libgcc1_1:4.6.3-1 libgdbm3_1.8.3-10 libgfortran3_4.6.3-1 libglib2.0-0_2.30.2-6 libgmp10_2:5.0.4+dfsg-1 libgomp1_4.6.3-1 libgpm2_1.20.4-4 libice6_2:1.0.7-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 liblapack-dev_3.3.1-1 liblapack3gf_3.3.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.10-1 libmount1_2.20.1-4 libmpc2_0.9-4 libmpfr4_3.1.0-4 libncurses5_5.9-4 libncurses5-dev_5.9-4 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpaper-utils_1.1.24+nmu1 libpaper1_1.1.24+nmu1 libpcre3_8.12-4 libpcre3-dev_8.12-4 libpcrecpp0_8.12-4 libpipeline1_1.2.1-1 libpixman-1-0_0.24.4-1 libpng12-0_1.2.47-1 libpng12-dev_1.2.47-1 libpod-plainer-perl_1.03-1 libquadmath0_4.6.3-1 libreadline-dev_6.2-8 libreadline6_6.2-8 libreadline6-dev_6.2-8 libselinux1_2.1.9-2 libsemanage-common_2.1.6-2 libsemanage1_2.1.6-2 libsepol1_2.1.4-1 libslang2_2.2.4-6 libsm6_2:1.2.0-2 libss2_1.42.1-2 libstdc++6_4.6.3-1 libstdc++6-4.6-dev_4.6.3-1 libswitch-perl_2.16-2 libthai-data_0.1.17-1 libthai0_0.1.17-1 libtiff4_3.9.6-1 libtimedate-perl_1.2000-1 libtinfo-dev_5.9-4 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libustr-1.0-1_1.0.4-2 libuuid1_2.20.1-4 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libxau6_1:1.0.6-4 libxcb-render0_1.8-2 libxcb-shm0_1.8-2 libxcb1_1.8-2 libxdmcp6_1:1.1.0-4 libxext6_2:1.3.0-3 libxft2_2.2.0-3 libxml2_2.7.8.dfsg-7 libxrender1_1:0.9.6-2 libxss1_1:1.2.1-2 libxt6_1:1.1.1-2 linux-libc-dev_3.2.7-1 login_1:4.1.5-1 lsb-base_3.2+Debian29 make_3.81-8.1 man-db_2.6.1-1 mawk_1.3.3-16 mount_2.20.1-4 multiarch-support_2.13-27 ncurses-base_5.9-4 ncurses-bin_5.9-4 passwd_1:4.1.5-1 patch_2.6.1-3 perl_5.14.2-9 perl-base_5.14.2-9 perl-modules_5.14.2-9 po-debconf_1.0.16+nmu2 r-base-core_2.14.2-1 r-base-dev_2.14.2-1 r-bioc-limma_3.10.0-1 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-edger-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 tcl8.5_8.5.11-1 tk8.5_8.5.11-1 ttf-dejavu-core_2.33-2 tzdata_2011n-2 ucf_3.0025+nmu2 unzip_6.0-5 util-linux_2.20.1-4 x11-common_1:7.6+12 xdg-utils_1.1.0~rc1+git20111210-6 xz-utils_5.1.1alpha+20110809-3 zip_3.0-4 zlib1g_1:1.2.6.dfsg-2 zlib1g-dev_1:1.2.6.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -375,10 +418,10 @@ Package versions: apt_0.8.15.9 base-files_6.5 base-passwd_3.5.23 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.4.0~dfsg-1.dsc)
-dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.4.0~dfsg
-dpkg-source: info: unpacking r-bioc-edger_2.4.0~dfsg.orig.tar.gz
-dpkg-source: info: applying r-bioc-edger_2.4.0~dfsg-1.diff.gz
+dpkg-source: warning: extracting unsigned source package (r-bioc-edger_2.4.3~dfsg-1.dsc)
+dpkg-source: info: extracting r-bioc-edger in r-bioc-edger-2.4.3~dfsg
+dpkg-source: info: unpacking r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+dpkg-source: info: applying r-bioc-edger_2.4.3~dfsg-1.diff.gz
Check disc space
────────────────
@@ -395,7 +438,7 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-8c157305-d343-47b1-9c99-84eeb2dae6c2
+SCHROOT_SESSION_ID=sid-amd64-sbuild-6a048ffc-cecd-4251-8870-6edc837a4030
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -407,9 +450,9 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-edger
-dpkg-buildpackage: source version 2.4.0~dfsg-1
+dpkg-buildpackage: source version 2.4.3~dfsg-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build r-bioc-edger-2.4.0~dfsg
+ dpkg-source --before-build r-bioc-edger-2.4.3~dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
@@ -430,17 +473,30 @@ for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
+ rm -f debian/*.debhelper.log
+ rm -f debian/files
+ find . \( \( -type f -a \
+ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
+ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
+ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
+ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
+ \) -exec rm -f {} \; \) -o \
+ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+ rm -f *-stamp
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
- dpkg-source -b r-bioc-edger-2.4.0~dfsg
+ dpkg-source -b r-bioc-edger-2.4.3~dfsg
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
-dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.4.0~dfsg.orig.tar.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.0~dfsg-1.diff.gz
-dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.0~dfsg-1.dsc
+dpkg-source: info: building r-bioc-edger using existing r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.3~dfsg-1.diff.gz
+dpkg-source: info: building r-bioc-edger in r-bioc-edger_2.4.3~dfsg-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
@@ -466,10 +522,16 @@ make[1]: Leaving directory `/«PKGBUILDDIR»'
test -x debian/rules
dh_testroot
dh_prep
+ rm -f debian/r-bioc-edger.substvars
+ rm -f debian/r-bioc-edger.*.debhelper
+ rm -rf debian/r-bioc-edger/
dh_installdirs -A
+ install -d debian/r-bioc-edger
mkdir -p "."
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
dh_installdirs usr/lib/R/site-library
+ install -d debian/r-bioc-edger/usr/lib/R/site-library
+echo "R:Depends=r-base-core (>= 2.14.2-1)" >> debian/r-bioc-edger.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-edger/usr/lib/R/site-library --clean \
@@ -501,8 +563,16 @@ if test -f debian/overrides; then \
fi
Adding cdbs dependencies to debian/r-bioc-edger.substvars
dh_installdirs -pr-bioc-edger
-echo "R:Depends=r-base-core (>= 2.14.0~)" >> debian/r-bioc-edger.substvars
dh_installdocs -pr-bioc-edger ./NEWS
+ install -g 0 -o 0 -d debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cd 'tests/..' && find 'tests' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /«PKGBUILDDIR»/debian/r-bioc-edger/usr/share/doc/r-bioc-edger \;
+ cp -a debian/README.test debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ cp -a ./NEWS debian/r-bioc-edger/usr/share/doc/r-bioc-edger
+ chown -R 0:0 debian/r-bioc-edger/usr/share/doc
+ chmod -R go=rX debian/r-bioc-edger/usr/share/doc
+ chmod -R u\+rw debian/r-bioc-edger/usr/share/doc
+ install -g 0 -o 0 -m 644 -p debian/README.Debian debian/r-bioc-edger/usr/share/doc/r-bioc-edger/README.Debian
+ install -g 0 -o 0 -m 644 -p debian/copyright debian/r-bioc-edger/usr/share/doc/r-bioc-edger/copyright
dh_installexamples -pr-bioc-edger
dh_installman -pr-bioc-edger
dh_installinfo -pr-bioc-edger
@@ -510,12 +580,16 @@ dh_installmenu -pr-bioc-edger
dh_installcron -pr-bioc-edger
dh_installinit -pr-bioc-edger
dh_installdebconf -pr-bioc-edger
+ install -o 0 -g 0 -d debian/r-bioc-edger/DEBIAN
dh_installemacsen -pr-bioc-edger
dh_installcatalogs -pr-bioc-edger
+ grep -s -v '^misc:Depends=' debian/r-bioc-edger.substvars > debian/r-bioc-edger.substvars.new || true
+ mv debian/r-bioc-edger.substvars.new debian/r-bioc-edger.substvars
dh_installpam -pr-bioc-edger
dh_installlogrotate -pr-bioc-edger
dh_installlogcheck -pr-bioc-edger
dh_installchangelogs -pr-bioc-edger
+ install -o 0 -g 0 -p -m644 debian/changelog debian/r-bioc-edger/usr/share/doc/r-bioc-edger/changelog.Debian
dh_installudev -pr-bioc-edger
dh_lintian -pr-bioc-edger
dh_bugfiles -pr-bioc-edger
@@ -525,21 +599,45 @@ dh_installmime -pr-bioc-edger
dh_installgsettings -pr-bioc-edger
dh_strip -pr-bioc-edger
dh_compress -pr-bioc-edger
+ cd debian/r-bioc-edger
+ chmod a-x usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ gzip -9nf usr/share/doc/r-bioc-edger/changelog.Debian usr/share/doc/r-bioc-edger/NEWS usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save
+ cd '/«PKGBUILDDIR»'
dh_fixperms -pr-bioc-edger
+ find debian/r-bioc-edger -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+ find debian/r-bioc-edger ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+ find debian/r-bioc-edger/usr/share/doc -type f ! -regex 'debian/r-bioc-edger/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
+ find debian/r-bioc-edger/usr/share/man debian/r-bioc-edger/usr/man/ debian/r-bioc-edger/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
+ find debian/r-bioc-edger/usr/lib/perl5 debian/r-bioc-edger/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
+ find debian/r-bioc-edger/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_makeshlibs -pr-bioc-edger
+ rm -f debian/r-bioc-edger/DEBIAN/shlibs
dh_installdeb -pr-bioc-edger
dh_perl -pr-bioc-edger
dh_shlibdeps -pr-bioc-edger
dh_gencontrol -pr-bioc-edger
+ echo misc:Depends= >> debian/r-bioc-edger.substvars
+ dpkg-gencontrol -ldebian/changelog -Tdebian/r-bioc-edger.substvars -Pdebian/r-bioc-edger
+ chmod 644 debian/r-bioc-edger/DEBIAN/control
+ chown 0:0 debian/r-bioc-edger/DEBIAN/control
dh_md5sums -pr-bioc-edger
+ (cd debian/r-bioc-edger >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
+ chmod 644 debian/r-bioc-edger/DEBIAN/md5sums
+ chown 0:0 debian/r-bioc-edger/DEBIAN/md5sums
dh_builddeb -pr-bioc-edger -- -Z xz
-dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.4.0~dfsg-1_all.deb'.
- dpkg-genchanges >../r-bioc-edger_2.4.0~dfsg-1_amd64.changes
+ dpkg-deb -Z xz --build debian/r-bioc-edger ..
+dpkg-deb: building package `r-bioc-edger' in `../r-bioc-edger_2.4.3~dfsg-1_all.deb'.
+ dpkg-genchanges >../r-bioc-edger_2.4.3~dfsg-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build r-bioc-edger-2.4.0~dfsg
+ dpkg-source --after-build r-bioc-edger-2.4.3~dfsg
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20111118-1353
+Build finished at 20120305-1513
Finished
────────
@@ -551,15 +649,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.4.0~dfsg-1_amd64.changes:
+r-bioc-edger_2.4.3~dfsg-1_amd64.changes:
────────────────────────────────────────
Format: 1.8
-Date: Fri, 18 Nov 2011 13:47:35 +0900
+Date: Mon, 05 Mar 2012 15:10:28 +0900
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: source all
-Version: 2.4.0~dfsg-1
+Version: 2.4.3~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -567,46 +665,50 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-bioc-edger - Empirical analysis of digital gene expression data in R
Changes:
- r-bioc-edger (2.4.0~dfsg-1) unstable; urgency=low
+ r-bioc-edger (2.4.3~dfsg-1) unstable; urgency=low
.
- [16d49d0] Bioconductor release 2.9.
- [0e79ff9] Removed User's Guide (no source) in agreement with the
- upstream authors, see “README.Debian”.
+ 04cc8b8 New upstream 2.4.3.
+ c494484 Renamed debian/upstream-metadata.yaml to debian/upstream.
+ 27bae62 Corrected URLs, paths, and mangles in watch file.
+ d6029fb Provide a more stable URL to the manual.
+ 09acea4 Obtain ${R:Depends} directly throuhg r-base-dev.
+ 5df05c4 Conforms to Policy 3.9.3.
+ 2b01b4a Verbose Debhelper.
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- aea3ebd0959d1746cc0100c7d1d99e9d66ed82c7 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
- 18ae45dd85bd1ea791463dcfe9cee71e76e77e1f 544866 r-bioc-edger_2.4.0~dfsg-1_all.deb
+ 0cada0d94d8652f9897ead67ad2f2f7b4189d31f 1195 r-bioc-edger_2.4.3~dfsg-1.dsc
+ e1ecd1dc7e041f87b7f3e8839b0f4ef7d263df42 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 8783839cafece97982f54ebd91412799c2720df2 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
+ 3b84ce146f85549c990324306a1cb624e9fe4492 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
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- ad8f1cbeef39c3d03913855190a1b229bb4edc5f8ecdb4c21972f5eb7f9ccaae 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
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+ db2af0f00f791789caa71dd35559d2c46a973df4e2085d95ed4c01624e79d97f 1195 r-bioc-edger_2.4.3~dfsg-1.dsc
+ a0bf6e486a09d95bb310df6ae45648b617f89866a04a68267c0e805b970855ef 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
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+ 1f3dd397ce30784f39e797f97faf890753edbbeb683dd2ac857fb45ae6ea1742 545386 r-bioc-edger_2.4.3~dfsg-1_all.deb
Files:
- 87900dce9563004d6ea9c7b9b2de50c9 1186 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.dsc
- abf5fc133e11e5f84d9e406e71754e3d 401286 gnu-r optional r-bioc-edger_2.4.0~dfsg.orig.tar.gz
- 5b3e4ed543ad5d478185953b602a9aab 2997 gnu-r optional r-bioc-edger_2.4.0~dfsg-1.diff.gz
- 3402e7c58237bf5e7bae4da54521ccde 544866 gnu-r optional r-bioc-edger_2.4.0~dfsg-1_all.deb
+ b8781978cb746fc89137f9d06e7441ef 1195 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.dsc
+ 64e7be8d28c5395539f19a912d536c7c 401057 gnu-r optional r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 3f14d6575d27c4b84d4af286d9018736 3057 gnu-r optional r-bioc-edger_2.4.3~dfsg-1.diff.gz
+ 2295d2d1d1530ef4f6f5a63e08f27b00 545386 gnu-r optional r-bioc-edger_2.4.3~dfsg-1_all.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-r-bioc-edger_2.4.0~dfsg-1_all.deb
+r-bioc-edger_2.4.3~dfsg-1_all.deb
─────────────────────────────────
new debian package, version 2.0.
- size 544866 bytes: control archive= 1765 bytes.
- 813 bytes, 18 lines control
+ size 545386 bytes: control archive= 1765 bytes.
+ 814 bytes, 18 lines control
2831 bytes, 37 lines md5sums
Package: r-bioc-edger
- Version: 2.4.0~dfsg-1
+ Version: 2.4.3~dfsg-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1542
+ Installed-Size: 1543
Pre-Depends: dpkg (>= 1.15.6)
- Depends: r-base-core (>= 2.14.0~), r-bioc-limma
+ Depends: r-base-core (>= 2.14.2-1), r-bioc-limma
Suggests: r-cran-mass
Section: gnu-r
Priority: optional
@@ -619,59 +721,59 @@ r-bioc-edger_2.4.0~dfsg-1_all.deb
distribution. It is also useful for differential signal analysis with
other types of genome-scale count data.
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/
-drwxr-xr-x root/root 0 2011-11-18 13:52 ./usr/lib/
-drwxr-xr-x root/root 0 2011-11-18 13:52 ./usr/lib/R/
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/
-drwxr-xr-x root/root 0 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/R/
--rw-r--r-- root/root 115195 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
--rw-r--r-- root/root 383 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/R/edgeR
--rw-r--r-- root/root 2105 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/help/
--rw-r--r-- root/root 3237 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/help/AnIndex
--rw-r--r-- root/root 198374 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
--rw-r--r-- root/root 1204 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/help/aliases.rds
--rw-r--r-- root/root 742 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/help/paths.rds
--rw-r--r-- root/root 1671 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
--rw-r--r-- root/root 3654 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/NEWS
--rw-r--r-- root/root 1588 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/CITATION
-drwxr-xr-x root/root 0 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/
--rw-r--r-- root/root 248500 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/NC1.txt
--rw-r--r-- root/root 19 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/datalist
--rw-r--r-- root/root 318545 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
--rw-r--r-- root/root 263571 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
--rw-r--r-- root/root 228426 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/data/NC2.txt
--rw-r--r-- root/root 770 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/NAMESPACE
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/html/
--rw-r--r-- root/root 19904 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/html/00Index.html
--rw-r--r-- root/root 1179 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/html/R.css
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/
--rw-r--r-- root/root 3348 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
--rw-r--r-- root/root 3145 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
--rw-r--r-- root/root 429 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
--rw-r--r-- root/root 157 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/data.rds
--rw-r--r-- root/root 1472 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/links.rds
--rw-r--r-- root/root 192 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
--rw-r--r-- root/root 917 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/Meta/package.rds
--rw-r--r-- root/root 1040 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/DESCRIPTION
--rw-r--r-- root/root 6503 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/INDEX
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/lib/R/site-library/edgeR/doc/
--rw-r--r-- root/root 691 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/doc/index.html
--rwxr-xr-x root/root 2726 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
--rw-r--r-- root/root 67216 2011-11-18 13:52 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/r-bioc-edger/
--rw-r--r-- root/root 1536 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/NEWS.gz
--rw-r--r-- root/root 717 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/README.test
--rw-r--r-- root/root 1244 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/copyright
-drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/r-bioc-edger/tests/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/
+-rw-r--r-- root/root 116505 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/edgeR.rdb
+-rw-r--r-- root/root 383 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/edgeR
+-rw-r--r-- root/root 2105 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/R/edgeR.rdx
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/
+-rw-r--r-- root/root 3219 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/AnIndex
+-rw-r--r-- root/root 197950 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/edgeR.rdb
+-rw-r--r-- root/root 1195 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/aliases.rds
+-rw-r--r-- root/root 741 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/paths.rds
+-rw-r--r-- root/root 1668 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/help/edgeR.rdx
+-rw-r--r-- root/root 3745 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/NEWS
+-rw-r--r-- root/root 1588 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/CITATION
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/
+-rw-r--r-- root/root 248500 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/NC1.txt
+-rw-r--r-- root/root 19 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/datalist
+-rw-r--r-- root/root 318545 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/Tu102.txt
+-rw-r--r-- root/root 263571 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/Tu98.txt
+-rw-r--r-- root/root 228426 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/data/NC2.txt
+-rw-r--r-- root/root 566 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/NAMESPACE
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/html/
+-rw-r--r-- root/root 19776 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/html/00Index.html
+-rw-r--r-- root/root 1179 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/html/R.css
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/
+-rw-r--r-- root/root 3340 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/Rd.rds
+-rw-r--r-- root/root 3136 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/hsearch.rds
+-rw-r--r-- root/root 317 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/nsInfo.rds
+-rw-r--r-- root/root 157 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/data.rds
+-rw-r--r-- root/root 1465 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/links.rds
+-rw-r--r-- root/root 192 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/vignette.rds
+-rw-r--r-- root/root 921 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/Meta/package.rds
+-rw-r--r-- root/root 1032 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/DESCRIPTION
+-rw-r--r-- root/root 6503 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/INDEX
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/doc/
+-rw-r--r-- root/root 691 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/doc/index.html
+-rwxr-xr-x root/root 2726 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
+-rw-r--r-- root/root 67216 2012-03-05 15:13 ./usr/lib/R/site-library/edgeR/doc/edgeR.pdf
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/
+-rw-r--r-- root/root 1563 2012-01-11 11:22 ./usr/share/doc/r-bioc-edger/NEWS.gz
+-rw-r--r-- root/root 717 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/README.test
+-rw-r--r-- root/root 1281 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/copyright
+drwxr-xr-x root/root 0 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/tests/
-rw-r--r-- root/root 5448 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.Rout.save.gz
-rw-r--r-- root/root 2456 2011-11-01 08:30 ./usr/share/doc/r-bioc-edger/tests/edgeR-Tests.R
--rw-r--r-- root/root 494 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
--rw-r--r-- root/root 270 2011-11-18 13:52 ./usr/share/doc/r-bioc-edger/README.Debian
+-rw-r--r-- root/root 699 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/changelog.Debian.gz
+-rw-r--r-- root/root 274 2012-03-05 15:13 ./usr/share/doc/r-bioc-edger/README.Debian
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -682,8 +784,9 @@ drwxr-xr-x root/root 0 2011-11-18 13:53 ./usr/share/doc/r-bioc-edger/tes
lintian
───────
+Subroutine IO::Socket::INET6::sockaddr_in6 redefined at /usr/share/perl/5.14/Exporter.pm line 67.
+ at /usr/share/perl5/IO/Socket/INET6.pm line 21
I: r-bioc-edger source: missing-debian-source-format
-P: r-bioc-edger source: unversioned-copyright-format-uri http://dep.debian.net/deps/dep5/
P: r-bioc-edger: no-upstream-changelog
W: r-bioc-edger: copyright-without-copyright-notice
W: r-bioc-edger: executable-not-elf-or-script usr/lib/R/site-library/edgeR/doc/edgeR.Rnw
@@ -695,172 +798,25 @@ I: Lintian run was successful.
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config* gettext*
- gettext-base* gfortran* gfortran-4.6* groff-base* html2text*
- intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
- libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
- libglib2.0-0* libice6* libjpeg8* libjpeg8-dev* liblapack-dev* liblapack3gf*
- libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils* libpaper1*
- libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
- libpng12-dev* libreadline-dev* libreadline6-dev* libsm6* libthai-data*
- libthai0* libtiff4* libtinfo-dev* libunistring0* libx11-6* libx11-data*
- libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6* libxext6* libxft2*
- libxml2* libxrender1* libxss1* libxt6* man-db* po-debconf* r-base-core*
- r-base-dev* r-bioc-limma* sbuild-build-depends-r-bioc-edger-dummy* tcl8.5*
- tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip* zlib1g-dev*
-0 upgraded, 0 newly installed, 76 to remove and 0 not upgraded.
-After this operation, 129 MB disk space will be freed.
-(Reading database ... 14758 files and directories currently installed.)
-Removing sbuild-build-depends-r-bioc-edger-dummy ...
-Removing r-base-dev ...
-Removing cdbs ...
-Removing debhelper ...
-Removing dpatch ...
-Purging configuration files for dpatch ...
-Removing file ...
-Removing r-bioc-limma ...
-Removing r-base-core ...
-Purging configuration files for r-base-core ...
-Removing libpango1.0-0 ...
-Purging configuration files for libpango1.0-0 ...
-Removing fontconfig ...
-Purging configuration files for fontconfig ...
-Removing tk8.5 ...
-Purging configuration files for tk8.5 ...
-Removing libxft2 ...
-Purging configuration files for libxft2 ...
-Removing libcairo2 ...
-Purging configuration files for libcairo2 ...
-Removing libfontconfig1 ...
-Purging configuration files for libfontconfig1 ...
-Removing fontconfig-config ...
-Purging configuration files for fontconfig-config ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing gfortran ...
-Removing gfortran-4.6 ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing liblapack-dev ...
-Removing libblas-dev ...
-Removing liblapack3gf ...
-Purging configuration files for liblapack3gf ...
-Removing libblas3gf ...
-Purging configuration files for libblas3gf ...
-Removing libbz2-dev ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libthai0 ...
-Purging configuration files for libthai0 ...
-Removing libdatrie1 ...
-Purging configuration files for libdatrie1 ...
-Removing libexpat1 ...
-Purging configuration files for libexpat1 ...
-Removing libfreetype6 ...
-Purging configuration files for libfreetype6 ...
-Removing libgfortran3 ...
-Purging configuration files for libgfortran3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libxt6 ...
-Purging configuration files for libxt6 ...
-Removing libsm6 ...
-Purging configuration files for libsm6 ...
-Removing libice6 ...
-Purging configuration files for libice6 ...
-Removing libtiff4 ...
-Purging configuration files for libtiff4 ...
-Removing libjpeg8-dev ...
-Removing libjpeg8 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libncurses5-dev ...
-Removing libpaper-utils ...
-Removing libpaper1 ...
-Purging configuration files for libpaper1 ...
-Removing libpcre3-dev ...
-Removing libpcrecpp0 ...
-Purging configuration files for libpcrecpp0 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libpixman-1-0 ...
-Purging configuration files for libpixman-1-0 ...
-Removing libpng12-dev ...
-Removing libreadline-dev ...
-Removing libreadline6-dev ...
-Removing libthai-data ...
-Removing libtinfo-dev ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxss1 ...
-Purging configuration files for libxss1 ...
-Removing libxrender1 ...
-Purging configuration files for libxrender1 ...
-Removing libxext6 ...
-Purging configuration files for libxext6 ...
-Removing libx11-6 ...
-Purging configuration files for libx11-6 ...
-Removing libx11-data ...
-Removing libxcb-shm0 ...
-Purging configuration files for libxcb-shm0 ...
-Removing libxcb-render0 ...
-Purging configuration files for libxcb-render0 ...
-Removing libxcb1 ...
-Purging configuration files for libxcb1 ...
-Removing libxau6 ...
-Purging configuration files for libxau6 ...
-Removing libxdmcp6 ...
-Purging configuration files for libxdmcp6 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing tcl8.5 ...
-Purging configuration files for tcl8.5 ...
-Removing ttf-dejavu-core ...
-Removing ucf ...
-Purging configuration files for ucf ...
-Removing unzip ...
-Purging configuration files for unzip ...
-Removing x11-common ...
-All runlevel operations denied by policy
-invoke-rc.d: policy-rc.d denied execution of stop.
-Purging configuration files for x11-common ...
-Removing xdg-utils ...
-Removing zip ...
-Removing zlib1g-dev ...
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 4412
-Build-Time: 8
+Build-Space: 4408
+Build-Time: 9
Distribution: unstable
-Install-Time: 86
-Job: r-bioc-edger_2.4.0~dfsg-1.dsc
+Install-Time: 19
+Job: r-bioc-edger_2.4.3~dfsg-1.dsc
Lintian: pass
Package: r-bioc-edger
-Package-Time: 97
-Source-Version: 2.4.0~dfsg-1
-Space: 4412
+Package-Time: 31
+Source-Version: 2.4.3~dfsg-1
+Space: 4408
Status: successful
-Version: 2.4.0~dfsg-1
+Version: 2.4.3~dfsg-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20111118-1353
-Build needed 00:01:37, 4412k disc space
+Finished at 20120305-1513
+Build needed 00:00:31, 4408k disc space
diff --git a/dsc b/dsc
index 6f411f3..0db1b18 100644
--- a/dsc
+++ b/dsc
@@ -5,41 +5,41 @@ Format: 1.0
Source: r-bioc-edger
Binary: r-bioc-edger
Architecture: all
-Version: 2.4.0~dfsg-1
+Version: 2.4.3~dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>
Dm-Upload-Allowed: yes
Homepage: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/r-bioc-edger.git
Vcs-Git: git://anonscm.debian.org/debian-med/r-bioc-edger.git
-Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.10.0), r-bioc-limma
+Build-Depends: debhelper (>= 8), cdbs, r-base-dev (>= 2.14.2~20120222), r-bioc-limma
Package-List:
r-bioc-edger deb gnu-r optional
Checksums-Sha1:
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- aea3ebd0959d1746cc0100c7d1d99e9d66ed82c7 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ e1ecd1dc7e041f87b7f3e8839b0f4ef7d263df42 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 8783839cafece97982f54ebd91412799c2720df2 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
Checksums-Sha256:
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Files:
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- 5b3e4ed543ad5d478185953b602a9aab 2997 r-bioc-edger_2.4.0~dfsg-1.diff.gz
+ 64e7be8d28c5395539f19a912d536c7c 401057 r-bioc-edger_2.4.3~dfsg.orig.tar.gz
+ 3f14d6575d27c4b84d4af286d9018736 3057 r-bioc-edger_2.4.3~dfsg-1.diff.gz
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diff --git a/upload b/upload
new file mode 100644
index 0000000..c8bac22
--- /dev/null
+++ b/upload
@@ -0,0 +1,6 @@
+u r-bioc-edger_2.4.3~dfsg-1.dsc ftp.upload.debian.org Mon Mar 5 15:51:07 2012
+u r-bioc-edger_2.4.3~dfsg-1_all.deb ftp.upload.debian.org Mon Mar 5 15:51:10 2012
+u r-bioc-edger_2.4.3~dfsg-1.diff.gz ftp.upload.debian.org Mon Mar 5 15:51:11 2012
+u r-bioc-edger_2.4.3~dfsg.orig.tar.gz ftp.upload.debian.org Mon Mar 5 15:51:13 2012
+u r-bioc-edger_2.4.3~dfsg-1_amd64.changes ftp.upload.debian.org Mon Mar 5 15:51:14 2012
+s r-bioc-edger_2.4.3~dfsg-1_amd64.changes ftp.upload.debian.org Mon Mar 5 15:51:14 2012
--
empirical analysis of digital gene expression data in R
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