[med-svn] [SCM] r-bioc-limma branch, master, updated. debian/3.10.0-1-4-g7ef2264

[Charles Plessy]

The following commit has been merged in the master branch:
commit 7ef226472bc8e0adac8a4b5159874ca35f49b01d
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Mar 5 16:58:49 2012 +0900

    Removing inst/doc/usersguide.pdf, as its source is missing.

diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..fa41beb
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,5 @@
+The file inst/doc/usersguide.pdf has been removed from the original
+upstream package, as it was not accompanied by its source.  It can be
+downloaded at the following URL.
+
+  http://www.bioconductor.org/packages/release/bioc/vignettes/limma/inst/doc/usersguide.pdf
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..148847f
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,3 @@
+The original upstream sources are repacked using the filter option of
+git-import-orig, see debian/gbp.conf, debian/copyright and
+debian/README.Debian.
diff --git a/debian/gbp.conf b/debian/gbp.conf
index 30158c4..38330d1 100644
--- a/debian/gbp.conf
+++ b/debian/gbp.conf
@@ -4,6 +4,12 @@
 # use pristine-tar:
 pristine-tar = True
 
+[git-import-orig]
+# import filter:
+filter = ['inst/doc/usersguide.pdf']
+# filter out files from tarball passed to pristine tar:
+filter-pristine-tar = True
+
 [git-dch]
 # include 7 digits of the commit id in the changelog enty:
 id-length = 7
diff --git a/debian/watch b/debian/watch
index 0b7435a..f984a6a 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,6 +1,6 @@
 version=3
 
 # This tracks the current stable version of bioconductor
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=dversionmangle=s|~dfsg||,downloadurlmangle=s/\.\./packages\/release\/bioc/ \
 http://www.bioconductor.org/packages/release/bioc/html/limma.html \
  ../src/contrib/limma_(.*).tar.gz

-- 
linear models for microarray data