[med-svn] r9970 - in trunk/packages/python-biopython/tags: . 1.59-1/debian

Philipp Benner philipp at alioth.debian.org
Fri Mar 9 14:57:31 UTC 2012


Author: philipp
Date: 2012-03-09 14:57:30 +0000 (Fri, 09 Mar 2012)
New Revision: 9970

Added:
   trunk/packages/python-biopython/tags/1.59-1/
   trunk/packages/python-biopython/tags/1.59-1/debian/changelog
   trunk/packages/python-biopython/tags/1.59-1/debian/control
   trunk/packages/python-biopython/tags/1.59-1/debian/rules
Removed:
   trunk/packages/python-biopython/tags/1.59-1/debian/changelog
   trunk/packages/python-biopython/tags/1.59-1/debian/control
   trunk/packages/python-biopython/tags/1.59-1/debian/rules
Log:
[svn-buildpackage] Tagging python-biopython 1.59-1

Deleted: trunk/packages/python-biopython/tags/1.59-1/debian/changelog
===================================================================
--- trunk/packages/python-biopython/trunk/debian/changelog	2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/changelog	2012-03-09 14:57:30 UTC (rev 9970)
@@ -1,235 +0,0 @@
-python-biopython (1.57-1) unstable; urgency=low
-
-  * New upstream release (Closes: #585282).
-
- -- Philipp Benner <philipp at debian.org>  Sun, 10 Apr 2011 17:58:01 +0000
-
-python-biopython (1.56-1) unstable; urgency=low
-
-  * New upstream release.
-
- -- Philipp Benner <philipp at debian.org>  Thu, 02 Dec 2010 17:30:09 +0000
-
-python-biopython (1.54-1) unstable; urgency=low
-
-  * New upstream release.
-
- -- Philipp Benner <philipp at debian.org>  Fri, 28 May 2010 00:06:43 +0200
-
-python-biopython (1.53-1) unstable; urgency=low
-
-  * New upstream release.
-
- -- Philipp Benner <philipp at debian.org>  Mon, 21 Dec 2009 15:30:37 +0000
-
-python-biopython (1.52-1) unstable; urgency=low
-
-  * New upstream release.
-
- -- Philipp Benner <philipp at debian.org>  Wed, 30 Sep 2009 10:16:03 +0000
-
-python-biopython (1.51final-2) unstable; urgency=low
-
-  * Merged patch from ubuntu to make the package ready for
-    python2.6 (Closes: #543236).
-
- -- Philipp Benner <philipp at debian.org>  Mon, 24 Aug 2009 09:29:27 +0000
-
-python-biopython (1.51final-1) unstable; urgency=low
-
-  * New upstream release
-  * debian/control: suggesting muscle, clustalw, mafft, emboss, and
-    blast2 for installation
-
- -- Philipp Benner <philipp at debian.org>  Wed, 19 Aug 2009 10:41:19 +0000
-
-python-biopython (1.51b-2) unstable; urgency=low
-
-  * Dropped python-biopython-martel.
-  * Dropped dependency on python-egenix-mxtexttools.
-  * Removed DM-Upload-Allowed: yes.
-
- -- Philipp Benner <philipp at debian.org>  Tue, 11 Aug 2009 19:47:52 +0000
-
-python-biopython (1.51b-1) unstable; urgency=low
-
-  * New upstream release
-  * debian/control:
-    - moved python-martel back to section python (python packages do not
-    use section oldlibs)
-  * debian/patches/02-fix-wise-test.patch
-    - removed (merged with upstream)
-  * debian/control:
-    - Changed the description of python-biopython-sql according to Peter Cock's
-      suggestions.
-    [Charles Plessy]
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sat, 27 Jun 2009 15:14:52 +0000
-
-python-biopython (1.49-1) unstable; urgency=low
-
-  * New upstream release.
-    - uses NumPy rather than its precursor Numeric (Closes: #478457)
-    - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
-      Bio.IntelliGenetics are deprecated.
-    - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
-      and will be deprecated in a future release.
-    - Bio.Fasta is also considered to be obsolete and will eventually be
-      deprecated.
-  * debian/control:
-    - added myself as Uploader.
-    - depends on python-numpy instead of python-numeric-ext.
-    - moved python-martel to oldlibs section, priority extra as it is
-      deprecated, and indicate this in the description.
-    - build-depend on python-mysqldb and wise for the tests after building.
-  * Use Debhelper 7 (debian/co{ntrol,mpat}).
-  * debian/copyright: added myself to the Hall of Fame and updated to latest
-    draft of the machine-readable format.
-  * debian/watch: makes beta versions lower by prepending a tilde between
-    numbers and letters (1.49b -> 1.49~b).
-  * mmCIF support enabled:
-    - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
-    - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
-    - debian/control: build-depends on quilt.
-  * debian/python-biopython-doc.doc-base: corrected index name that was changed
-    upstream.
-  * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
-    version of Wise.
-  * debian/rules: perform tests after build.
-
- -- Charles Plessy <plessy at debian.org>  Fri, 23 Jan 2009 22:19:50 +0900
-
-python-biopython (1.47-1) unstable; urgency=low
-
-  * New upstream release
-  * Standards version 3.8.0
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sun, 03 Aug 2008 14:29:33 +0200
-
-python-biopython (1.45-3) unstable; urgency=low
-
-  * Removed dependency on python-numeric-ext since it is already in
-    the recommends field
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sun, 01 Jun 2008 10:34:48 +0200
-
-python-biopython (1.45-2) unstable; urgency=low
-
-  * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)
-
- -- Morten Kjeldgaard <mok at bioxray.au.dk>  Wed, 23 Apr 2008 00:01:16 +0200
-
-python-biopython (1.45-1) unstable; urgency=low
-
-  * New upstream release.
-  * Added doc-base.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sat, 29 Mar 2008 12:20:41 +0100
-
-python-biopython (1.44-3) unstable; urgency=low
-
-  * New maintainer e-mail address.
-  * debian/control: Added DM-Upload-Allowed: yes.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de>  Mon, 14 Jan 2008 18:35:18 +0100
-
-python-biopython (1.44-2) unstable; urgency=low
-
-  * Moved suggested package python-numeric-ext to recommends field
-    (Closes: #452379).
-  * Moved wise from recommends to suggests field.
-  * Removed package tags from debian/control.
-  * Added homepage field to debian/control.
-  * Changed maintainer to Debian-Med Packaging Team.
-  * Removed .DS_Store.gz file from doc package.
-
- -- Philipp Benner <mail at philipp-benner.de>  Thu, 22 Nov 2007 13:35:00 +0100
-
-python-biopython (1.44-1) unstable; urgency=low
-
-  * New upstream release.
-  * Machine interpretable copyright file.
-
- -- Philipp Benner <mail at philipp-benner.de>  Fri, 16 Nov 2007 16:49:11 +0100
-
-python-biopython (1.43-2) unstable; urgency=low
-
-  * Rebuild for python-2.5 support (Closes: #424025).
-
- -- Philipp Benner <mail at philipp-benner.de>  Thu, 14 Jun 2007 21:40:18 +0200
-
-python-biopython (1.43-1) unstable; urgency=low
-
-  * New upstream release
-  * Adapted debian-med tags
-
- -- Philipp Benner <mail at philipp-benner.de>  Tue, 27 Mar 2007 17:45:58 +0200
-
-python-biopython (1.42-2) unstable; urgency=low
-
-  * uscan support
-  * package tags
-
- -- Philipp Benner <mail at philipp-benner.de>  Sat,  9 Sep 2006 14:39:18 +0200
-
-python-biopython (1.42-1) unstable; urgency=low
-
-  * New upstream release
-
- -- Philipp Benner <mail at philipp-benner.de>  Sat, 22 Jul 2006 01:30:51 +0200
-
-python-biopython (1.41-2.1) unstable; urgency=low
-
-  * Non-maintainer upload.
-  * Update package to the last python policy (Closes: #373515).
-
- -- Pierre Habouzit <madcoder at debian.org>  Fri, 30 Jun 2006 13:45:39 +0200
-
-python-biopython (1.41-2) unstable; urgency=low
-
-  * suggests python-numeric-ext
-  * now with KDTree
-
- -- Philipp Benner <mail at philipp-benner.de>  Mon, 20 Feb 2006 21:02:18 +0100
-
-python-biopython (1.41-1) unstable; urgency=low
-
-  * New upstream release
-
- -- Philipp Benner <mail at philipp-benner.de>  Sat,  5 Nov 2005 20:15:03 +0100
-
-python-biopython (1.40b-3) unstable; urgency=low
-
-  * now using compatibility level 4
-  * removed obsolete dependencies (closes: #328142)
-
- -- Philipp Benner <mail at philipp-benner.de>  Wed, 14 Sep 2005 12:06:06 +0200
-
-python-biopython (1.40b-2) unstable; urgency=low
-
-  * Function `mmcif_get_string' implicitly converted to pointer
-    (closes: #326403)
-  * now standards version 3.6.2
-
- -- Philipp Benner <mail at philipp-benner.de>  Wed,  7 Sep 2005 09:53:30 +0200
-
-python-biopython (1.40b-1) unstable; urgency=low
-
-  * new release
-  * dropped support for python2.2
-
- -- Philipp Benner <mail at philipp-benner.de>  Tue, 05 Apr 2005 20:55:59 +0200
-
-python-biopython (1.30-2) unstable; urgency=low
-
-  * Fixed bugs in debian/rules and debian/control which prevented
-    porting the package.
-  * Using -fPIC to build shared lib KDTree. (closes: #278959)
-
- -- Philipp Benner <mail at philipp-benner.de>  Sun, 10 Oct 2004 19:48:04 +0200
-
-python-biopython (1.30-1) unstable; urgency=low
-
-  * Initial Release. (closes: #157402)
-
- -- Philipp Benner <mail at philipp-benner.de>  Tue, 21 Sep 2004 20:02:00 +0200

Copied: trunk/packages/python-biopython/tags/1.59-1/debian/changelog (from rev 9969, trunk/packages/python-biopython/trunk/debian/changelog)
===================================================================
--- trunk/packages/python-biopython/tags/1.59-1/debian/changelog	                        (rev 0)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/changelog	2012-03-09 14:57:30 UTC (rev 9970)
@@ -0,0 +1,251 @@
+python-biopython (1.59-1) unstable; urgency=low
+
+  * New upstream release.
+  * debian/control: Standards version 3.9.3.
+  * debian/rules: added dh_numpy.
+
+ -- Philipp Benner <philipp at debian.org>  Fri, 09 Mar 2012 13:38:09 +0000
+
+python-biopython (1.58-1) unstable; urgency=low
+
+  * New upstream release.
+  * debian/rules: added targets build-arch and build-indep.
+  * debian/control: Standards version 3.9.2.
+
+ -- Philipp Benner <philipp at debian.org>  Wed, 02 Nov 2011 19:51:49 +0000
+
+python-biopython (1.57-1) unstable; urgency=low
+
+  * New upstream release (Closes: #585282).
+
+ -- Philipp Benner <philipp at debian.org>  Sun, 10 Apr 2011 17:58:01 +0000
+
+python-biopython (1.56-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org>  Thu, 02 Dec 2010 17:30:09 +0000
+
+python-biopython (1.54-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org>  Fri, 28 May 2010 00:06:43 +0200
+
+python-biopython (1.53-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org>  Mon, 21 Dec 2009 15:30:37 +0000
+
+python-biopython (1.52-1) unstable; urgency=low
+
+  * New upstream release.
+
+ -- Philipp Benner <philipp at debian.org>  Wed, 30 Sep 2009 10:16:03 +0000
+
+python-biopython (1.51final-2) unstable; urgency=low
+
+  * Merged patch from ubuntu to make the package ready for
+    python2.6 (Closes: #543236).
+
+ -- Philipp Benner <philipp at debian.org>  Mon, 24 Aug 2009 09:29:27 +0000
+
+python-biopython (1.51final-1) unstable; urgency=low
+
+  * New upstream release
+  * debian/control: suggesting muscle, clustalw, mafft, emboss, and
+    blast2 for installation
+
+ -- Philipp Benner <philipp at debian.org>  Wed, 19 Aug 2009 10:41:19 +0000
+
+python-biopython (1.51b-2) unstable; urgency=low
+
+  * Dropped python-biopython-martel.
+  * Dropped dependency on python-egenix-mxtexttools.
+  * Removed DM-Upload-Allowed: yes.
+
+ -- Philipp Benner <philipp at debian.org>  Tue, 11 Aug 2009 19:47:52 +0000
+
+python-biopython (1.51b-1) unstable; urgency=low
+
+  * New upstream release
+  * debian/control:
+    - moved python-martel back to section python (python packages do not
+    use section oldlibs)
+  * debian/patches/02-fix-wise-test.patch
+    - removed (merged with upstream)
+  * debian/control:
+    - Changed the description of python-biopython-sql according to Peter Cock's
+      suggestions.
+    [Charles Plessy]
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sat, 27 Jun 2009 15:14:52 +0000
+
+python-biopython (1.49-1) unstable; urgency=low
+
+  * New upstream release.
+    - uses NumPy rather than its precursor Numeric (Closes: #478457)
+    - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
+      Bio.IntelliGenetics are deprecated.
+    - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
+      and will be deprecated in a future release.
+    - Bio.Fasta is also considered to be obsolete and will eventually be
+      deprecated.
+  * debian/control:
+    - added myself as Uploader.
+    - depends on python-numpy instead of python-numeric-ext.
+    - moved python-martel to oldlibs section, priority extra as it is
+      deprecated, and indicate this in the description.
+    - build-depend on python-mysqldb and wise for the tests after building.
+  * Use Debhelper 7 (debian/co{ntrol,mpat}).
+  * debian/copyright: added myself to the Hall of Fame and updated to latest
+    draft of the machine-readable format.
+  * debian/watch: makes beta versions lower by prepending a tilde between
+    numbers and letters (1.49b -> 1.49~b).
+  * mmCIF support enabled:
+    - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
+    - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
+    - debian/control: build-depends on quilt.
+  * debian/python-biopython-doc.doc-base: corrected index name that was changed
+    upstream.
+  * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
+    version of Wise.
+  * debian/rules: perform tests after build.
+
+ -- Charles Plessy <plessy at debian.org>  Fri, 23 Jan 2009 22:19:50 +0900
+
+python-biopython (1.47-1) unstable; urgency=low
+
+  * New upstream release
+  * Standards version 3.8.0
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sun, 03 Aug 2008 14:29:33 +0200
+
+python-biopython (1.45-3) unstable; urgency=low
+
+  * Removed dependency on python-numeric-ext since it is already in
+    the recommends field
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sun, 01 Jun 2008 10:34:48 +0200
+
+python-biopython (1.45-2) unstable; urgency=low
+
+  * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)
+
+ -- Morten Kjeldgaard <mok at bioxray.au.dk>  Wed, 23 Apr 2008 00:01:16 +0200
+
+python-biopython (1.45-1) unstable; urgency=low
+
+  * New upstream release.
+  * Added doc-base.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de>  Sat, 29 Mar 2008 12:20:41 +0100
+
+python-biopython (1.44-3) unstable; urgency=low
+
+  * New maintainer e-mail address.
+  * debian/control: Added DM-Upload-Allowed: yes.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de>  Mon, 14 Jan 2008 18:35:18 +0100
+
+python-biopython (1.44-2) unstable; urgency=low
+
+  * Moved suggested package python-numeric-ext to recommends field
+    (Closes: #452379).
+  * Moved wise from recommends to suggests field.
+  * Removed package tags from debian/control.
+  * Added homepage field to debian/control.
+  * Changed maintainer to Debian-Med Packaging Team.
+  * Removed .DS_Store.gz file from doc package.
+
+ -- Philipp Benner <mail at philipp-benner.de>  Thu, 22 Nov 2007 13:35:00 +0100
+
+python-biopython (1.44-1) unstable; urgency=low
+
+  * New upstream release.
+  * Machine interpretable copyright file.
+
+ -- Philipp Benner <mail at philipp-benner.de>  Fri, 16 Nov 2007 16:49:11 +0100
+
+python-biopython (1.43-2) unstable; urgency=low
+
+  * Rebuild for python-2.5 support (Closes: #424025).
+
+ -- Philipp Benner <mail at philipp-benner.de>  Thu, 14 Jun 2007 21:40:18 +0200
+
+python-biopython (1.43-1) unstable; urgency=low
+
+  * New upstream release
+  * Adapted debian-med tags
+
+ -- Philipp Benner <mail at philipp-benner.de>  Tue, 27 Mar 2007 17:45:58 +0200
+
+python-biopython (1.42-2) unstable; urgency=low
+
+  * uscan support
+  * package tags
+
+ -- Philipp Benner <mail at philipp-benner.de>  Sat,  9 Sep 2006 14:39:18 +0200
+
+python-biopython (1.42-1) unstable; urgency=low
+
+  * New upstream release
+
+ -- Philipp Benner <mail at philipp-benner.de>  Sat, 22 Jul 2006 01:30:51 +0200
+
+python-biopython (1.41-2.1) unstable; urgency=low
+
+  * Non-maintainer upload.
+  * Update package to the last python policy (Closes: #373515).
+
+ -- Pierre Habouzit <madcoder at debian.org>  Fri, 30 Jun 2006 13:45:39 +0200
+
+python-biopython (1.41-2) unstable; urgency=low
+
+  * suggests python-numeric-ext
+  * now with KDTree
+
+ -- Philipp Benner <mail at philipp-benner.de>  Mon, 20 Feb 2006 21:02:18 +0100
+
+python-biopython (1.41-1) unstable; urgency=low
+
+  * New upstream release
+
+ -- Philipp Benner <mail at philipp-benner.de>  Sat,  5 Nov 2005 20:15:03 +0100
+
+python-biopython (1.40b-3) unstable; urgency=low
+
+  * now using compatibility level 4
+  * removed obsolete dependencies (closes: #328142)
+
+ -- Philipp Benner <mail at philipp-benner.de>  Wed, 14 Sep 2005 12:06:06 +0200
+
+python-biopython (1.40b-2) unstable; urgency=low
+
+  * Function `mmcif_get_string' implicitly converted to pointer
+    (closes: #326403)
+  * now standards version 3.6.2
+
+ -- Philipp Benner <mail at philipp-benner.de>  Wed,  7 Sep 2005 09:53:30 +0200
+
+python-biopython (1.40b-1) unstable; urgency=low
+
+  * new release
+  * dropped support for python2.2
+
+ -- Philipp Benner <mail at philipp-benner.de>  Tue, 05 Apr 2005 20:55:59 +0200
+
+python-biopython (1.30-2) unstable; urgency=low
+
+  * Fixed bugs in debian/rules and debian/control which prevented
+    porting the package.
+  * Using -fPIC to build shared lib KDTree. (closes: #278959)
+
+ -- Philipp Benner <mail at philipp-benner.de>  Sun, 10 Oct 2004 19:48:04 +0200
+
+python-biopython (1.30-1) unstable; urgency=low
+
+  * Initial Release. (closes: #157402)
+
+ -- Philipp Benner <mail at philipp-benner.de>  Tue, 21 Sep 2004 20:02:00 +0200

Deleted: trunk/packages/python-biopython/tags/1.59-1/debian/control
===================================================================
--- trunk/packages/python-biopython/trunk/debian/control	2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/control	2012-03-09 14:57:30 UTC (rev 9970)
@@ -1,60 +0,0 @@
-Source: python-biopython
-Priority: optional
-Section: python
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Philipp Benner <philipp at debian.org>,
-           Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
- python-reportlab, python-numpy,
-# For the purpose of the tests
- python-mysqldb, wise
-XS-Python-Version: >= 2.3
-Standards-Version: 3.9.1
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/
-Homepage: http://biopython.org
-
-Package: python-biopython
-Architecture: any
-Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab
-Provides: ${python:Provides}
-Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
-Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
-Recommends: python-biopython-doc (= ${source:Version})
-Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2
-Description: Python library for bioinformatics
- The Biopython Project is an international association
- of developers of freely available Python tools for
- computational molecular biology.
- .
- It is a distributed collaborative effort to develop Python
- libraries and applications which address the needs of
- current and future work in bioinformatics. The source code
- is made available under the Biopython License, which is
- extremely liberal and compatible with almost every license
- in the world. We work along with the Open Bioinformatics
- Foundation, who generously provide web and CVS space for
- the project. 
-
-Package: python-biopython-doc
-Section: doc
-Architecture: all
-Depends: ${misc:Depends}
-Recommends: python-biopython (= ${source:Version})
-Description: Documentation for the Biopython library
- Documentation and examples about how to use the Biopython
- library.
-
-Package: python-biopython-sql
-# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so.
-Architecture: all
-Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython
-Provides: ${python:Provides}
-Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
-Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
-XB-Python-Version: ${python:Versions}
-Description: Biopython support for the BioSQL database schema
- This is the Biopython interface to a BioSQL database (see www.biosql.org
- for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
- interfaces onto the same shared SQL schema.

Copied: trunk/packages/python-biopython/tags/1.59-1/debian/control (from rev 9969, trunk/packages/python-biopython/trunk/debian/control)
===================================================================
--- trunk/packages/python-biopython/tags/1.59-1/debian/control	                        (rev 0)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/control	2012-03-09 14:57:30 UTC (rev 9970)
@@ -0,0 +1,60 @@
+Source: python-biopython
+Priority: optional
+Section: python
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Philipp Benner <philipp at debian.org>,
+           Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support,
+ python-reportlab, python-numpy,
+# For the purpose of the tests
+ python-mysqldb, wise
+XS-Python-Version: >= 2.3
+Standards-Version: 3.9.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/
+Homepage: http://biopython.org
+
+Package: python-biopython
+Architecture: any
+Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab
+Provides: ${python:Provides}
+Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
+Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1)
+XB-Python-Version: ${python:Versions}
+Recommends: python-biopython-doc (= ${source:Version})
+Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2
+Description: Python library for bioinformatics
+ The Biopython Project is an international association
+ of developers of freely available Python tools for
+ computational molecular biology.
+ .
+ It is a distributed collaborative effort to develop Python
+ libraries and applications which address the needs of
+ current and future work in bioinformatics. The source code
+ is made available under the Biopython License, which is
+ extremely liberal and compatible with almost every license
+ in the world. We work along with the Open Bioinformatics
+ Foundation, who generously provide web and CVS space for
+ the project. 
+
+Package: python-biopython-doc
+Section: doc
+Architecture: all
+Depends: ${misc:Depends}
+Recommends: python-biopython (= ${source:Version})
+Description: Documentation for the Biopython library
+ Documentation and examples about how to use the Biopython
+ library.
+
+Package: python-biopython-sql
+# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so.
+Architecture: all
+Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython
+Provides: ${python:Provides}
+Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
+Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1)
+XB-Python-Version: ${python:Versions}
+Description: Biopython support for the BioSQL database schema
+ This is the Biopython interface to a BioSQL database (see www.biosql.org
+ for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
+ interfaces onto the same shared SQL schema.

Deleted: trunk/packages/python-biopython/tags/1.59-1/debian/rules
===================================================================
--- trunk/packages/python-biopython/trunk/debian/rules	2011-11-02 19:00:39 UTC (rev 8393)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/rules	2012-03-09 14:57:30 UTC (rev 9970)
@@ -1,90 +0,0 @@
-#!/usr/bin/make -f
-
-include /usr/share/quilt/quilt.make
-
-PWD    := $(shell pwd)
-PYDEF  := $(shell pyversions -d)
-PYVERS := $(shell pyversions -r)
-
-build: patch build-stamp
-build-stamp: $(PYVERS:%=build-%)
-	touch build-stamp
-build-python%:
-	echo $(DEB_HOST_ARCH)
-	yes | python$* setup.py build
-
-install: $(PYVERS:%=install-%)
-install-python%:
-	dh_testdir
-	dh_testroot
-
-	yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp --install-layout=deb
-
-	dh_movefiles -ppython-biopython		\
-		     -ppython-biopython-sql	\
-		     --sourcedir=debian/python$*-tmp
-
-clean: unpatch $(PYVERS:%=clean-%)
-	dh_testdir
-	dh_testroot
-
-	dh_clean
-
-	$(RM) build-stamp
-
-# fix bugs in setup.py
-	$(RM) Tests/*.pyc
-	$(RM) Tests/Graphics/*.eps
-	$(RM) Tests/Graphics/*.pdf
-	$(RM) Tests/dump
-	$(RM) Tests/NeuralNetwork/patternio.txt
-	$(RM) -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx
-
-	$(RM) -r build
-
-clean-python%:
-	dh_testdir
-	dh_testroot
-
-	python$* setup.py clean
-
-	$(RM) -r debian/python$*-tmp
-
-binary-indep: build install
-	dh_testdir
-	dh_testroot
-
-	dh_installdocs -i
-	dh_installchangelogs -i
-	dh_fixperms -i
-	dh_compress -i
-	dh_pysupport -i
-	dh_gencontrol -i
-	dh_md5sums -i
-	dh_installdeb -i
-	dh_builddeb -i
-
-binary-arch: build install
-	dh_testdir
-	dh_testroot
-
-	dh_installdocs -a
-	dh_installchangelogs -a
-	dh_fixperms -a
-	dh_compress -a
-ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
-	dh_strip -a
-endif
-	dh_pysupport -a
-	dh_shlibdeps -a
-	dh_gencontrol -a
-	dh_md5sums -a
-	dh_installdeb -a
-	dh_builddeb -a
-
-test:
-	python$* setup.py test
-
-binary: binary-indep binary-arch test
-
-.PHONY: clean build install binary binary-indep binary-arch

Copied: trunk/packages/python-biopython/tags/1.59-1/debian/rules (from rev 9969, trunk/packages/python-biopython/trunk/debian/rules)
===================================================================
--- trunk/packages/python-biopython/tags/1.59-1/debian/rules	                        (rev 0)
+++ trunk/packages/python-biopython/tags/1.59-1/debian/rules	2012-03-09 14:57:30 UTC (rev 9970)
@@ -0,0 +1,94 @@
+#!/usr/bin/make -f
+
+include /usr/share/quilt/quilt.make
+
+PWD    := $(shell pwd)
+PYDEF  := $(shell pyversions -d)
+PYVERS := $(shell pyversions -r)
+
+build: build-arch build-indep
+build-arch: build-stamp
+build-indep: build-stamp
+build-stamp: patch $(PYVERS:%=build-%)
+	touch build-stamp
+build-python%:
+	echo $(DEB_HOST_ARCH)
+	yes | python$* setup.py build
+
+install: $(PYVERS:%=install-%)
+install-python%:
+	dh_testdir
+	dh_testroot
+
+	yes | python$* setup.py install --root $(CURDIR)/debian/python$*-tmp --install-layout=deb
+
+	dh_movefiles -ppython-biopython		\
+		     -ppython-biopython-sql	\
+		     --sourcedir=debian/python$*-tmp
+
+clean: unpatch $(PYVERS:%=clean-%)
+	dh_testdir
+	dh_testroot
+
+	dh_clean
+
+	$(RM) build-stamp
+
+# fix bugs in setup.py
+	$(RM) Tests/*.pyc
+	$(RM) Tests/Graphics/*.eps
+	$(RM) Tests/Graphics/*.pdf
+	$(RM) Tests/dump
+	$(RM) Tests/NeuralNetwork/patternio.txt
+	$(RM) -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx
+
+	$(RM) -r build
+
+clean-python%:
+	dh_testdir
+	dh_testroot
+
+	python$* setup.py clean
+
+	$(RM) -r debian/python$*-tmp
+
+binary-indep: build install
+	dh_testdir
+	dh_testroot
+
+	dh_installdocs -i
+	dh_installchangelogs -i
+	dh_fixperms -i
+	dh_compress -i
+	dh_pysupport -i
+	dh_numpy -i
+	dh_gencontrol -i
+	dh_md5sums -i
+	dh_installdeb -i
+	dh_builddeb -i
+
+binary-arch: build install
+	dh_testdir
+	dh_testroot
+
+	dh_installdocs -a
+	dh_installchangelogs -a
+	dh_fixperms -a
+	dh_compress -a
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+	dh_strip -a
+endif
+	dh_pysupport -a
+	dh_numpy -a
+	dh_shlibdeps -a
+	dh_gencontrol -a
+	dh_md5sums -a
+	dh_installdeb -a
+	dh_builddeb -a
+
+test:
+	python$* setup.py test
+
+binary: binary-indep binary-arch test
+
+.PHONY: clean build install binary binary-indep binary-arch




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