[med-svn] r9974 - in trunk/packages/mcl/tags: . 1:12-068-1/debian
Philipp Benner
philipp at alioth.debian.org
Fri Mar 9 15:18:16 UTC 2012
Author: philipp
Date: 2012-03-09 15:18:16 +0000 (Fri, 09 Mar 2012)
New Revision: 9974
Added:
trunk/packages/mcl/tags/1:12-068-1/
trunk/packages/mcl/tags/1:12-068-1/debian/changelog
trunk/packages/mcl/tags/1:12-068-1/debian/control
trunk/packages/mcl/tags/1:12-068-1/debian/rules
Removed:
trunk/packages/mcl/tags/1:12-068-1/debian/changelog
trunk/packages/mcl/tags/1:12-068-1/debian/control
trunk/packages/mcl/tags/1:12-068-1/debian/rules
Log:
[svn-buildpackage] Tagging mcl 1:12-068-1
Deleted: trunk/packages/mcl/tags/1:12-068-1/debian/changelog
===================================================================
--- trunk/packages/mcl/trunk/debian/changelog 2011-01-24 16:58:10 UTC (rev 5699)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/changelog 2012-03-09 15:18:16 UTC (rev 9974)
@@ -1,336 +0,0 @@
-mcl (1:10-201-21) UNRELEASED; urgency=low
-
- * New upstream version
- * debian/control:
- - Added myself to uploaders
- - Fixed spelling of Debian Med
- - Standards-Version: 3.9.1 (no changes needed)
- - debhelper 7
- - removed versioned conflicts for mcl-doc from quite old mcl version
- which seems to be useless these days
- * debian/source/format: 3.0 (quilt)
- * debian/rules, debian/patches/01-manpage-errors.patch:
- Use sed on installed packages to get the same effect as the patch but
- there is no need to change the patch for new versions
-
- -- Andreas Tille <tille at debian.org> Mon, 24 Jan 2011 15:58:07 +0100
-
-mcl (1:10-148-1) unstable; urgency=low
-
- * New upstream release
-
- -- Philipp Benner <philipp at debian.org> Tue, 01 Jun 2010 10:44:22 +0200
-
-mcl (1:09-308-1) unstable; urgency=low
-
- * New upstream release
- * Moved repository to debian-med
-
- -- Philipp Benner <philipp at debian.org> Tue, 24 Nov 2009 20:43:56 +0000
-
-mcl (1:09-261-1) unstable; urgency=low
-
- * New upstream release
-
- -- Philipp Benner <philipp at debian.org> Wed, 30 Sep 2009 10:54:28 +0000
-
-mcl (1:09-182-1) unstable; urgency=low
-
- * New upstream release
- * New maintainer e-mail address
- * Removed DMUA
-
- -- Philipp Benner <philipp at debian.org> Fri, 24 Jul 2009 08:15:19 +0000
-
-mcl (1:09-149-1) unstable; urgency=low
-
- * New upstream release.
- * Standards version 3.8.2.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 27 Jun 2009 20:33:54 +0000
-
-mcl (1:08-312-1) unstable; urgency=low
-
- * New upstream release.
- * Added debian/patches/manpages-whatis-fix.patch.
- * Added debian/patches/perl-interpreter-path.patch
- * Build-depends on zoem and tidy to regenerate manuals.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 25 Jan 2009 12:29:28 +0000
-
-mcl (1:06-058-2) unstable; urgency=low
-
- * New maintainer e-mail address.
- * debian/control: Added DM-Upload-Allowed: yes.
- * debian/mcl-doc.doc-base.mcxio: fixed typo.
- * Changed the doc-base section according to the new policy.
-
- -- Philipp Benner <pbenner at uni-osnabrueck.de> Mon, 31 Mar 2008 11:04:53 +0200
-
-mcl (1:06-058-1) unstable; urgency=low
-
- * Adopting package (Closes: #452405).
- * Standards version 3.7.2.
- * Added Vcs-Browser and Vcs-Svn field to debian/control.
- * Machine interpretable copyright file.
- * Improved config.{guess,sub} handling.
- * New upstream release.
-
- -- Philipp Benner <mail at philipp-benner.de> Mon, 26 Nov 2007 14:37:21 +0100
-
-mcl (1:06-021-2) unstable; urgency=low
-
- * Orphaning this package (per Bug #452405). Set maintainer to Debian
- QA Group.
- * Move Homepage to control field.
-
- -- Joost van Baal <joostvb at debian.org> Sat, 24 Nov 2007 00:35:03 +0100
-
-mcl (1:06-021-1) unstable; urgency=low
-
- * New stable upstream release: Analysis and cache modes have been improved.
- This mcl binary in this release displays a citation reference on STDERR.
- Of course we honor upstream's wishes here, and do not suppress this
- helpful reminder. See the comments in debian/rules for hints on how to
- operate if you disagree.
- * debian/control: found out how to add Homepage pseudo-field (finally!)
- * debian/control: we no longer ship plain text manpages in mcl-doc, adjust
- description.
-
- -- Joost van Baal <joostvb at debian.org> Tue, 07 Feb 2006 21:05:31 +0100
-
-mcl (1:05-321-1) unstable; urgency=low
-
- * New stable upstream release. (Missed 05-272, 05-300, 05-314.)
- Some rephrased snippets from the announcement messages:
- + mcl-05-321:
- This mainly adds 'transformation' functionality, which complements the
- label-value streaming stuff. It means you can apply quite complex
- transformations on values, albeit only context-insensive transformations.
- + mcl-05-314:
- MCL can now read in label input in a simple line based format where
- each lines contains two labels and an optional value separated by
- whitespace. Output clusters are returned as lines of tab-separated
- labels. The BLAST parser can stream this format directly to mcl
- creating a very concise and easy to manage sequence clustering
- pipeline. The mcl(1) manual now has a 'getting started' section
- with some examples. New utility mcxload(1) with many custom options for
- reading in label data and transforming the associated numerical values,
- storing mappings in tab files and saving a graph in native mcl input
- format.
- + mcl-05-300:
- Important for mcxassemble users: Changed mcxassemble to pick the maximum
- between repeated entries by default. Other noteworthy changes: mcxdump
- can now also be used to restrict tab files, and: Fixed mcxsubs bug,
- introduced in last release, where selections never materialize unless one
- mysteriously specifies --rand-merge. No changes in mcl, only stuff done
- to the graph manipulation programs.
- + mcl-05-272:
- Major changes in clmimac, a noticeable change in mclblastline, a minor
- addition to mcxdeblast, improved dump functionality in mcl. If you just
- use mcl there is little need for upgrading.
- mcl-05-272 adds some extra stuff to doc/mcl/examples/ .
- As always, read changelog for details.
- * debian/mcl-doc.doc-base.mcxload: added
- * debian/{compat,control,rules}: move from debhelper compatibility level 3
- to 4 (add ${misc:Depends} to Depends)
- * debian/copyright: new snailmail address of FSF.
- * debian/watch: make sure it doesn't match the symlink mcl-latest.tar.gz.
- * debian/rules, debian/mcl-doc.install: no longer install upstream TODO file:
- it's not useful for users.
- * debian/control: fix versioned conflicts syntax
- * debian/rules: make proper use of comments: don't clobber build output.
- * debian/control: Standards Version bumped from 3.6.1.0 to 3.6.2.0 (no
- changes needed).
-
- -- Joost van Baal <joostvb at debian.org> Wed, 23 Nov 2005 16:36:39 +0100
-
-mcl (1:05-118-1) unstable; urgency=low
-
- * New stable upstream release: a lot faster on large graphs because a
- clunky input routine was fixed.
- * debian/rules: Make sure config.{guess,sub} are up to date. (Upstream
- _does_ ship these.)
- * debian/mcl-doc.doc-base.mcl, debian/mcl-doc.doc-base.mclfaq: We are no
- longer shipping documentation in txt format.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 25 May 2005 08:09:54 +0200
-
-mcl (1:05-096-1) unstable; urgency=low
-
- * New upstream development release. (Missed mcl-04-314, mcl-05-090.)
- The only difference between mcl 05-096 and the official 05-090 release is
- the addition of a clmorder(1) manpage. Here's a rephrased snippet from
- the 05-090 announcement message:
- Nothing changed in the core clustering algorithm. But:
- - Better support for diagnostics: mcl can now dump iterand submatrices.
- - Helper applications for analyzing cluster structure added: clxdo,
- clxcoarse (primitive hierarchical clustering, undocumented shell
- scripts, installed in /usr/share/doc/mcl/scripts) and clmorder.
- - Improvement of sibling applications: large mcxsubs rewrite - cleaner
- specification language and new modes and options. Also, rewrite of
- the IO library (umpteenth).
- Read changelog for details.
- * Install upstream TODO file.
- * Removed maintainer scripts: not needed for this package.
- * mcl-doc.doc-base.clmdist: fixed typo.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 06 Apr 2005 09:50:10 +0200
-
-mcl (1:04-250-2) unstable; urgency=medium
-
- * control: Fixed embarrasing typo in description (closes: #285424).
- This is the reason urgency=medium rather than high: it'd be very
- nice if this package made it to sarge, so that not too many people
- get exposed to this ugly typo: s/computer sciense/computer science/.
- * mcl 04-314 is out, but might not get packaged: it has no shocking
- improvements, and a new upstream is likely to get published soon.
-
- -- Joost van Baal <joostvb at debian.org> Sun, 16 Jan 2005 16:27:12 +0100
-
-mcl (1:04-250-1) unstable; urgency=low
-
- * New upstream release. (Missed mcl-04-230.)
- * watch: added, so that
- http://qa.debian.org/developer.php?gpg_key=969457F0 looks even
- more spiffy.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 08 Sep 2004 15:04:32 +0200
-
-mcl (1:04-189-1) unstable; urgency=low
-
- * New upstream release. (Missed mcl-04-174, 04-185, 04-187.)
- However, beware! mcl-04-103 might be considered non-free by some.
- LICENSE in this release is more clear, and free. debian/copyright
- updated accoringly.
- Furthermore, zoem >= 04-173 is needed for parsing cmlformat(1)'s
- zoem output. Such a zoem release is not yet packaged for Debian.
- * control: added Enhances: blast2, ncbi-tools-bin, bioperl.
-
- -- Joost van Baal <joostvb at debian.org> Thu, 08 Jul 2004 12:13:30 +0200
-
-mcl (1:04-103-1) unstable; urgency=low
-
- * New upstream development release. (Upstream has published six other
- development releases since 03-277.)
- * Splitted in mcl and mcl-doc binary packages.
- * No longer installs HTML documentation in plain text too.
- * Some manpages no longer register via doc-base; just the "major" ones
- do now.
- * Debian Policy compliance: bumped from Standards Version 3.5.9 to
- Standards-Version: 3.6.1.0: debian/rules now honors DEB_BUILD_OPTIONS.
-
- -- Joost van Baal <joostvb at debian.org> Tue, 13 Apr 2004 07:59:47 +0200
-
-mcl (1:03-277-1) unstable; urgency=low
-
- * New upstream release. This is the same as
- http://micans.org/mcl/src/mcl-03-276.tar.gz, the version number is
- the only thing which differs.
- * doc-base.clmmate: added. Upstream ships a clmmate manpage now: our
- package is lintian clean again.
-
- -- Joost van Baal <joostvb at debian.org> Sun, 05 Oct 2003 12:27:53 +0200
-
-mcl (1:03-276-1) unstable; urgency=low
-
- * New upstream _development_ release (missed formal releases 03-154,
- 03-178, 03-185, 03-245).
- * copyright: added note on citations when using the software in writing
- scientific papers.
- * rules: build and install BLAST parsing scripts. Do not build tribe
- stuff. See README for details.
- * doc-base.*: new docs: clmformat, mclblastline, mclpipeline, mcxassemble,
- mcxdeblast, mcxio. removed docs: clmconf, mcxformat.
-
- -- Joost van Baal <joostvb at debian.org> Fri, 03 Oct 2003 11:48:46 +0200
-
-mcl (1:03-010-2) unstable; urgency=low
-
- * Removed bogus mcximac doc-base file: mcximac does not exist. Tnx
- Laurent Bonnaud. (closes: #193058)
-
- -- Joost van Baal <joostvb at debian.org> Thu, 15 May 2003 10:58:17 +0200
-
-mcl (1:03-010-1) unstable; urgency=low
-
- * New upstream release.
- * Registered new docs using doc-base: clmimac, clmresidue, mcxmap. mcl
- and mclfaq now get installed in plain text format too.
- * debian/control: Standards 3.5.2 -> 3.5.9 (no changes needed).
-
- -- Joost van Baal <joostvb at debian.org> Sat, 10 May 2003 10:29:04 +0200
-
-mcl (1:02-277-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Joost van Baal <joostvb at debian.org> Fri, 25 Oct 2002 11:31:34 +0200
-
-mcl (1:02-172-1) unstable; urgency=low
-
- * New upstream release.
- * debian/rules: no longer uses touch-hack to work around timeskew
- problems: upstreams uses AM_MAINTAINER_MODE now.
-
- -- Joost van Baal <joostvb at debian.org> Mon, 24 Jun 2002 14:44:11 +0200
-
-mcl (1:02-116-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Joost van Baal <joostvb at debian.org> Sat, 27 Apr 2002 22:59:49 +0200
-
-mcl (1:02-113-cvs-1) unstable; urgency=low
-
- * build from current cvs, pre-release
- * debian/rules: set configure flags based on check equality of
- DEB_BUILD_GNU_TYPE and DEB_HOST_GNU_TYPE, cf current autotools-dev ideas.
- * debian/control, debian/copyright: MCL found a new home on the www.
- * debian/copyright: added note on contrib/tribe/ copyright holder.
- * doc-base.*: added doc-base.mclfaq and doc-base.mcximac
-
- -- Joost van Baal <joostvb at debian.org> Tue, 23 Apr 2002 23:30:37 +0200
-
-mcl (1:02-035-1) unstable; urgency=low
-
- * First release for the Debian archive (closes: #132283).
- * copyright: new download location, refer to /usr/share/common-licenses/GPL .
- * rules: applied some of Henrique de Moraes Holschuh's autotools-dev voodoo,
- got rid of some NOP dh_ calls.
- * docs: no longer installs NEWS; this file is not yet maintained upstream.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 6 Feb 2002 10:20:17 +0100
-
-mcl (1:02-034-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Joost van Baal <joostvb at debian.org> Mon, 4 Feb 2002 08:33:36 +0100
-
-mcl (1:02-030-1) unstable; urgency=low
-
- * Snapshot build from CVS.
- * Use epoch in version numbering, since upstream made order-breaking
- version numbering policy change.
- * Use docbase for all .ps and .html manpages.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 30 Jan 2002 22:46:28 +0100
-
-mcl (20020116-1) unstable; urgency=low
-
- * Snapshot build from CVS.
-
- -- Joost van Baal <joostvb at debian.org> Wed, 16 Jan 2002 21:08:22 +0100
-
-mcl (20011211-1) unstable; urgency=low
-
- * New upstream release. Now registers documentation using doc-base.
-
- -- Joost van Baal <joostvb at debian.org> Tue, 11 Dec 2001 20:19:42 +0100
-
-mcl (20011012-1) unstable; urgency=low
-
- * Initial Release.
-
- -- Joost van Baal <joostvb at debian.org> Fri, 12 Oct 2001 22:43:08 +0200
Copied: trunk/packages/mcl/tags/1:12-068-1/debian/changelog (from rev 9973, trunk/packages/mcl/trunk/debian/changelog)
===================================================================
--- trunk/packages/mcl/tags/1:12-068-1/debian/changelog (rev 0)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/changelog 2012-03-09 15:18:16 UTC (rev 9974)
@@ -0,0 +1,351 @@
+mcl (1:12-068-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/control: Standards version 3.9.2
+
+ -- Philipp Benner <philipp at debian.org> Fri, 09 Mar 2012 15:15:48 +0000
+
+mcl (1:11-294-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/rules: Added targets build-indep and build-arch
+ * debian/control: Standards version 3.9.2
+
+ -- Philipp Benner <philipp at debian.org> Wed, 02 Nov 2011 20:23:52 +0000
+
+mcl (1:10-201-21) unstable; urgency=low
+
+ * New upstream version
+ * debian/control:
+ - Added myself to uploaders
+ - Fixed spelling of Debian Med
+ - Standards-Version: 3.9.1 (no changes needed)
+ - debhelper 7
+ - removed versioned conflicts for mcl-doc from quite old mcl version
+ which seems to be useless these days
+ * debian/source/format: 3.0 (quilt)
+ * debian/rules, debian/patches/01-manpage-errors.patch:
+ Use sed on installed packages to get the same effect as the patch but
+ there is no need to change the patch for new versions
+
+ -- Andreas Tille <tille at debian.org> Mon, 24 Jan 2011 15:58:07 +0100
+
+mcl (1:10-148-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Philipp Benner <philipp at debian.org> Tue, 01 Jun 2010 10:44:22 +0200
+
+mcl (1:09-308-1) unstable; urgency=low
+
+ * New upstream release
+ * Moved repository to debian-med
+
+ -- Philipp Benner <philipp at debian.org> Tue, 24 Nov 2009 20:43:56 +0000
+
+mcl (1:09-261-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Philipp Benner <philipp at debian.org> Wed, 30 Sep 2009 10:54:28 +0000
+
+mcl (1:09-182-1) unstable; urgency=low
+
+ * New upstream release
+ * New maintainer e-mail address
+ * Removed DMUA
+
+ -- Philipp Benner <philipp at debian.org> Fri, 24 Jul 2009 08:15:19 +0000
+
+mcl (1:09-149-1) unstable; urgency=low
+
+ * New upstream release.
+ * Standards version 3.8.2.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sat, 27 Jun 2009 20:33:54 +0000
+
+mcl (1:08-312-1) unstable; urgency=low
+
+ * New upstream release.
+ * Added debian/patches/manpages-whatis-fix.patch.
+ * Added debian/patches/perl-interpreter-path.patch
+ * Build-depends on zoem and tidy to regenerate manuals.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Sun, 25 Jan 2009 12:29:28 +0000
+
+mcl (1:06-058-2) unstable; urgency=low
+
+ * New maintainer e-mail address.
+ * debian/control: Added DM-Upload-Allowed: yes.
+ * debian/mcl-doc.doc-base.mcxio: fixed typo.
+ * Changed the doc-base section according to the new policy.
+
+ -- Philipp Benner <pbenner at uni-osnabrueck.de> Mon, 31 Mar 2008 11:04:53 +0200
+
+mcl (1:06-058-1) unstable; urgency=low
+
+ * Adopting package (Closes: #452405).
+ * Standards version 3.7.2.
+ * Added Vcs-Browser and Vcs-Svn field to debian/control.
+ * Machine interpretable copyright file.
+ * Improved config.{guess,sub} handling.
+ * New upstream release.
+
+ -- Philipp Benner <mail at philipp-benner.de> Mon, 26 Nov 2007 14:37:21 +0100
+
+mcl (1:06-021-2) unstable; urgency=low
+
+ * Orphaning this package (per Bug #452405). Set maintainer to Debian
+ QA Group.
+ * Move Homepage to control field.
+
+ -- Joost van Baal <joostvb at debian.org> Sat, 24 Nov 2007 00:35:03 +0100
+
+mcl (1:06-021-1) unstable; urgency=low
+
+ * New stable upstream release: Analysis and cache modes have been improved.
+ This mcl binary in this release displays a citation reference on STDERR.
+ Of course we honor upstream's wishes here, and do not suppress this
+ helpful reminder. See the comments in debian/rules for hints on how to
+ operate if you disagree.
+ * debian/control: found out how to add Homepage pseudo-field (finally!)
+ * debian/control: we no longer ship plain text manpages in mcl-doc, adjust
+ description.
+
+ -- Joost van Baal <joostvb at debian.org> Tue, 07 Feb 2006 21:05:31 +0100
+
+mcl (1:05-321-1) unstable; urgency=low
+
+ * New stable upstream release. (Missed 05-272, 05-300, 05-314.)
+ Some rephrased snippets from the announcement messages:
+ + mcl-05-321:
+ This mainly adds 'transformation' functionality, which complements the
+ label-value streaming stuff. It means you can apply quite complex
+ transformations on values, albeit only context-insensive transformations.
+ + mcl-05-314:
+ MCL can now read in label input in a simple line based format where
+ each lines contains two labels and an optional value separated by
+ whitespace. Output clusters are returned as lines of tab-separated
+ labels. The BLAST parser can stream this format directly to mcl
+ creating a very concise and easy to manage sequence clustering
+ pipeline. The mcl(1) manual now has a 'getting started' section
+ with some examples. New utility mcxload(1) with many custom options for
+ reading in label data and transforming the associated numerical values,
+ storing mappings in tab files and saving a graph in native mcl input
+ format.
+ + mcl-05-300:
+ Important for mcxassemble users: Changed mcxassemble to pick the maximum
+ between repeated entries by default. Other noteworthy changes: mcxdump
+ can now also be used to restrict tab files, and: Fixed mcxsubs bug,
+ introduced in last release, where selections never materialize unless one
+ mysteriously specifies --rand-merge. No changes in mcl, only stuff done
+ to the graph manipulation programs.
+ + mcl-05-272:
+ Major changes in clmimac, a noticeable change in mclblastline, a minor
+ addition to mcxdeblast, improved dump functionality in mcl. If you just
+ use mcl there is little need for upgrading.
+ mcl-05-272 adds some extra stuff to doc/mcl/examples/ .
+ As always, read changelog for details.
+ * debian/mcl-doc.doc-base.mcxload: added
+ * debian/{compat,control,rules}: move from debhelper compatibility level 3
+ to 4 (add ${misc:Depends} to Depends)
+ * debian/copyright: new snailmail address of FSF.
+ * debian/watch: make sure it doesn't match the symlink mcl-latest.tar.gz.
+ * debian/rules, debian/mcl-doc.install: no longer install upstream TODO file:
+ it's not useful for users.
+ * debian/control: fix versioned conflicts syntax
+ * debian/rules: make proper use of comments: don't clobber build output.
+ * debian/control: Standards Version bumped from 3.6.1.0 to 3.6.2.0 (no
+ changes needed).
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 23 Nov 2005 16:36:39 +0100
+
+mcl (1:05-118-1) unstable; urgency=low
+
+ * New stable upstream release: a lot faster on large graphs because a
+ clunky input routine was fixed.
+ * debian/rules: Make sure config.{guess,sub} are up to date. (Upstream
+ _does_ ship these.)
+ * debian/mcl-doc.doc-base.mcl, debian/mcl-doc.doc-base.mclfaq: We are no
+ longer shipping documentation in txt format.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 25 May 2005 08:09:54 +0200
+
+mcl (1:05-096-1) unstable; urgency=low
+
+ * New upstream development release. (Missed mcl-04-314, mcl-05-090.)
+ The only difference between mcl 05-096 and the official 05-090 release is
+ the addition of a clmorder(1) manpage. Here's a rephrased snippet from
+ the 05-090 announcement message:
+ Nothing changed in the core clustering algorithm. But:
+ - Better support for diagnostics: mcl can now dump iterand submatrices.
+ - Helper applications for analyzing cluster structure added: clxdo,
+ clxcoarse (primitive hierarchical clustering, undocumented shell
+ scripts, installed in /usr/share/doc/mcl/scripts) and clmorder.
+ - Improvement of sibling applications: large mcxsubs rewrite - cleaner
+ specification language and new modes and options. Also, rewrite of
+ the IO library (umpteenth).
+ Read changelog for details.
+ * Install upstream TODO file.
+ * Removed maintainer scripts: not needed for this package.
+ * mcl-doc.doc-base.clmdist: fixed typo.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 06 Apr 2005 09:50:10 +0200
+
+mcl (1:04-250-2) unstable; urgency=medium
+
+ * control: Fixed embarrasing typo in description (closes: #285424).
+ This is the reason urgency=medium rather than high: it'd be very
+ nice if this package made it to sarge, so that not too many people
+ get exposed to this ugly typo: s/computer sciense/computer science/.
+ * mcl 04-314 is out, but might not get packaged: it has no shocking
+ improvements, and a new upstream is likely to get published soon.
+
+ -- Joost van Baal <joostvb at debian.org> Sun, 16 Jan 2005 16:27:12 +0100
+
+mcl (1:04-250-1) unstable; urgency=low
+
+ * New upstream release. (Missed mcl-04-230.)
+ * watch: added, so that
+ http://qa.debian.org/developer.php?gpg_key=969457F0 looks even
+ more spiffy.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 08 Sep 2004 15:04:32 +0200
+
+mcl (1:04-189-1) unstable; urgency=low
+
+ * New upstream release. (Missed mcl-04-174, 04-185, 04-187.)
+ However, beware! mcl-04-103 might be considered non-free by some.
+ LICENSE in this release is more clear, and free. debian/copyright
+ updated accoringly.
+ Furthermore, zoem >= 04-173 is needed for parsing cmlformat(1)'s
+ zoem output. Such a zoem release is not yet packaged for Debian.
+ * control: added Enhances: blast2, ncbi-tools-bin, bioperl.
+
+ -- Joost van Baal <joostvb at debian.org> Thu, 08 Jul 2004 12:13:30 +0200
+
+mcl (1:04-103-1) unstable; urgency=low
+
+ * New upstream development release. (Upstream has published six other
+ development releases since 03-277.)
+ * Splitted in mcl and mcl-doc binary packages.
+ * No longer installs HTML documentation in plain text too.
+ * Some manpages no longer register via doc-base; just the "major" ones
+ do now.
+ * Debian Policy compliance: bumped from Standards Version 3.5.9 to
+ Standards-Version: 3.6.1.0: debian/rules now honors DEB_BUILD_OPTIONS.
+
+ -- Joost van Baal <joostvb at debian.org> Tue, 13 Apr 2004 07:59:47 +0200
+
+mcl (1:03-277-1) unstable; urgency=low
+
+ * New upstream release. This is the same as
+ http://micans.org/mcl/src/mcl-03-276.tar.gz, the version number is
+ the only thing which differs.
+ * doc-base.clmmate: added. Upstream ships a clmmate manpage now: our
+ package is lintian clean again.
+
+ -- Joost van Baal <joostvb at debian.org> Sun, 05 Oct 2003 12:27:53 +0200
+
+mcl (1:03-276-1) unstable; urgency=low
+
+ * New upstream _development_ release (missed formal releases 03-154,
+ 03-178, 03-185, 03-245).
+ * copyright: added note on citations when using the software in writing
+ scientific papers.
+ * rules: build and install BLAST parsing scripts. Do not build tribe
+ stuff. See README for details.
+ * doc-base.*: new docs: clmformat, mclblastline, mclpipeline, mcxassemble,
+ mcxdeblast, mcxio. removed docs: clmconf, mcxformat.
+
+ -- Joost van Baal <joostvb at debian.org> Fri, 03 Oct 2003 11:48:46 +0200
+
+mcl (1:03-010-2) unstable; urgency=low
+
+ * Removed bogus mcximac doc-base file: mcximac does not exist. Tnx
+ Laurent Bonnaud. (closes: #193058)
+
+ -- Joost van Baal <joostvb at debian.org> Thu, 15 May 2003 10:58:17 +0200
+
+mcl (1:03-010-1) unstable; urgency=low
+
+ * New upstream release.
+ * Registered new docs using doc-base: clmimac, clmresidue, mcxmap. mcl
+ and mclfaq now get installed in plain text format too.
+ * debian/control: Standards 3.5.2 -> 3.5.9 (no changes needed).
+
+ -- Joost van Baal <joostvb at debian.org> Sat, 10 May 2003 10:29:04 +0200
+
+mcl (1:02-277-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Joost van Baal <joostvb at debian.org> Fri, 25 Oct 2002 11:31:34 +0200
+
+mcl (1:02-172-1) unstable; urgency=low
+
+ * New upstream release.
+ * debian/rules: no longer uses touch-hack to work around timeskew
+ problems: upstreams uses AM_MAINTAINER_MODE now.
+
+ -- Joost van Baal <joostvb at debian.org> Mon, 24 Jun 2002 14:44:11 +0200
+
+mcl (1:02-116-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Joost van Baal <joostvb at debian.org> Sat, 27 Apr 2002 22:59:49 +0200
+
+mcl (1:02-113-cvs-1) unstable; urgency=low
+
+ * build from current cvs, pre-release
+ * debian/rules: set configure flags based on check equality of
+ DEB_BUILD_GNU_TYPE and DEB_HOST_GNU_TYPE, cf current autotools-dev ideas.
+ * debian/control, debian/copyright: MCL found a new home on the www.
+ * debian/copyright: added note on contrib/tribe/ copyright holder.
+ * doc-base.*: added doc-base.mclfaq and doc-base.mcximac
+
+ -- Joost van Baal <joostvb at debian.org> Tue, 23 Apr 2002 23:30:37 +0200
+
+mcl (1:02-035-1) unstable; urgency=low
+
+ * First release for the Debian archive (closes: #132283).
+ * copyright: new download location, refer to /usr/share/common-licenses/GPL .
+ * rules: applied some of Henrique de Moraes Holschuh's autotools-dev voodoo,
+ got rid of some NOP dh_ calls.
+ * docs: no longer installs NEWS; this file is not yet maintained upstream.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 6 Feb 2002 10:20:17 +0100
+
+mcl (1:02-034-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Joost van Baal <joostvb at debian.org> Mon, 4 Feb 2002 08:33:36 +0100
+
+mcl (1:02-030-1) unstable; urgency=low
+
+ * Snapshot build from CVS.
+ * Use epoch in version numbering, since upstream made order-breaking
+ version numbering policy change.
+ * Use docbase for all .ps and .html manpages.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 30 Jan 2002 22:46:28 +0100
+
+mcl (20020116-1) unstable; urgency=low
+
+ * Snapshot build from CVS.
+
+ -- Joost van Baal <joostvb at debian.org> Wed, 16 Jan 2002 21:08:22 +0100
+
+mcl (20011211-1) unstable; urgency=low
+
+ * New upstream release. Now registers documentation using doc-base.
+
+ -- Joost van Baal <joostvb at debian.org> Tue, 11 Dec 2001 20:19:42 +0100
+
+mcl (20011012-1) unstable; urgency=low
+
+ * Initial Release.
+
+ -- Joost van Baal <joostvb at debian.org> Fri, 12 Oct 2001 22:43:08 +0200
Deleted: trunk/packages/mcl/tags/1:12-068-1/debian/control
===================================================================
--- trunk/packages/mcl/trunk/debian/control 2011-01-24 16:58:10 UTC (rev 5699)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/control 2012-03-09 15:18:16 UTC (rev 9974)
@@ -1,37 +0,0 @@
-Source: mcl
-Section: math
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Philipp Benner <philipp at debian.org>,
- Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 7), autotools-dev, quilt, zoem, tidy
-Standards-Version: 3.9.1
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mcl/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mcl/
-Homepage: http://micans.org/mcl/
-
-Package: mcl
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: mcl-doc
-Enhances: blast2, ncbi-tools-bin, bioperl-run
-Description: the Markov Cluster algorithm
- The MCL package is an implementation of the MCL algorithm, and offers
- utilities for manipulating sparse matrices (the essential data
- structure in the MCL algorithm) and conducting cluster experiments.
- .
- MCL is currently being used in sciences like biology (protein family
- detection, genomics), computer science (node clustering in
- Peer-to-Peer networks), and linguistics (text analysis).
-
-Package: mcl-doc
-Architecture: all
-Depends: ${misc:Depends}
-Section: doc
-Suggests: mcl
-Description: documentation for mcl
- The MCL package is an implementation of the Markov Cluster algorithm,
- for manipulating sparse matricess and conducting cluster experiments.
- .
- This is documention for mcl: the MCL FAQ, some examples as well as manpages
- in HTML and PostScript format.
Copied: trunk/packages/mcl/tags/1:12-068-1/debian/control (from rev 9973, trunk/packages/mcl/trunk/debian/control)
===================================================================
--- trunk/packages/mcl/tags/1:12-068-1/debian/control (rev 0)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/control 2012-03-09 15:18:16 UTC (rev 9974)
@@ -0,0 +1,37 @@
+Source: mcl
+Section: math
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Philipp Benner <philipp at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 7), autotools-dev, quilt, zoem, tidy
+Standards-Version: 3.9.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mcl/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mcl/
+Homepage: http://micans.org/mcl/
+
+Package: mcl
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: mcl-doc
+Enhances: blast2, ncbi-tools-bin, bioperl-run
+Description: Markov Cluster algorithm
+ The MCL package is an implementation of the MCL algorithm, and offers
+ utilities for manipulating sparse matrices (the essential data
+ structure in the MCL algorithm) and conducting cluster experiments.
+ .
+ MCL is currently being used in sciences like biology (protein family
+ detection, genomics), computer science (node clustering in
+ Peer-to-Peer networks), and linguistics (text analysis).
+
+Package: mcl-doc
+Architecture: all
+Depends: ${misc:Depends}
+Section: doc
+Suggests: mcl
+Description: documentation for mcl
+ The MCL package is an implementation of the Markov Cluster algorithm,
+ for manipulating sparse matricess and conducting cluster experiments.
+ .
+ This is documention for mcl: the MCL FAQ, some examples as well as manpages
+ in HTML and PostScript format.
Deleted: trunk/packages/mcl/tags/1:12-068-1/debian/rules
===================================================================
--- trunk/packages/mcl/trunk/debian/rules 2011-01-24 16:58:10 UTC (rev 5699)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/rules 2012-03-09 15:18:16 UTC (rev 9974)
@@ -1,194 +0,0 @@
-#!/usr/bin/make -f
-
-# based upon sample debian/rules that uses debhelper.
-# GNU copyright 1997 to 1999 by Joey Hess.
-
-# Uncomment this to turn on verbose mode.
-# export DH_VERBOSE=1
-
-include /usr/share/quilt/quilt.make
-
-pkg=mcl
-
-# allow bashism's in commandlines
-SHELL = /bin/bash
-
-# Debian Policy 10.1
-CFLAGS = -g -Wall
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
-CFLAGS += -O0
-else
-CFLAGS += -O2
-endif
-INSTALL = install
-INSTALL_PROGRAM = $(INSTALL) -p -o root -g root -m 755
-ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
-INSTALL_PROGRAM += -s
-endif
-
-# variables to be used in configure invocation. see
-# autotools-dev/README.Debian.gz
-export DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
-export DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
-
-# use autoconf 2.52 or newer
-ifeq ($(DEB_BUILD_GNU_TYPE), $(DEB_HOST_GNU_TYPE))
- confflags += --build $(DEB_HOST_GNU_TYPE)
-else
- confflags += --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
-endif
-
-## Build BLAST parsing script mcxdeblast and the pipeline script mclblastline
-## (sources in src/alien/oxygen). It encapsulates all the stages of parsing,
-## matrix creation, running mcl, and formatting the result
-## into a single application.
-confflags += --enable-blast
-
-## add --enable-tribe to confflags to add the upstreams supplied tribe tools
-## (protein clustering stuff). This builds and installs the tools
-##
-## tribe-families tribe-matrix tribemcl tribe-parse
-##
-## We're not doing it since tribe-matrix segfaults, and the tools lackproper
-## manpages. Furthermore, the BLAST parsing scripts can be used in place of
-## the tribe module.
-
-# confflags += --enable-tribe
-
-## If you really want to suppress the citation reference printed by MCL (the
-## one which looks like
-##
-## Please cite:
-## Stijn van Dongen, Graph Clustering by Flow Simulation. PhD thesis,
-## University of Utrecht, May 2000.
-## ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/full.pdf
-## or http://micans.org/mcl/lit/svdthesis.pdf.gz)
-## OR
-## Stijn van Dongen, A cluster algorithm for graphs. Technical
-## Report INS-R0010, National Research Institute for Mathematics
-## and Computer Science in the Netherlands, Amsterdam, May 2000.
-## ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z
-## or http://micans.org/mcl/lit/INS-R0010.ps.Z)
-##
-## ), then this is the place to do it. Of course we honor the choice of
-## upstream here, and build as suggested by upsteam.
-
-# confflags += --disable-helpful-reminder
-
-config: config-stamp
-config-stamp:
- dh_testdir
-
-# # Make sure we have fresh config.{sub,guess}, in order to make life
-# # more easy for porters to new architectures. See
-# # autotools-dev/README.Debian.gz
- if [ -r /usr/share/misc/config.sub ] && [ ! -f autofoo/config.sub.backup ]; then \
- mv -v autofoo/config.sub autofoo/config.sub.backup; \
- cp -f /usr/share/misc/config.sub autofoo/config.sub; \
- fi
-
- if [ -r /usr/share/misc/config.guess ] && [ ! -f autofoo/config.guess.backup ]; then \
- mv -v autofoo/config.guess autofoo/config.guess.backup; \
- cp -f /usr/share/misc/config.guess autofoo/config.guess; \
- fi
-
- touch $@
-
-config-clean:
- dh_testdir
- dh_testroot
-
- if [ -f autofoo/config.sub.backup ]; then \
- mv -fv autofoo/config.sub.backup autofoo/config.sub; \
- fi
-
- if [ -f autofoo/config.guess.backup ]; then \
- mv -fv autofoo/config.guess.backup autofoo/config.guess; \
- fi
-
- $(RM) config-stamp
-
-
-configure: config configure-stamp
-configure-stamp:
- dh_testdir
-
- ./configure \
- $(confflags) \
- --prefix=/usr \
- --mandir=\$${prefix}/share/man \
- --infodir=\$${prefix}/share/info
-
- touch configure-stamp
-
-build: patch configure build-stamp
-build-stamp: $(QUILT_STAMPFN)
- dh_testdir
-
- $(MAKE)
-
- touch build-stamp
-
-clean: unpatch config-clean
- dh_testdir
- dh_testroot
- $(RM) -f build-stamp configure-stamp
-
- [ ! -f Makefile ] || $(MAKE) distclean
-
- dh_clean
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
-
- $(MAKE) install DESTDIR=$(CURDIR)/debian/mcl
-# # install some extra stuff not installed by upstream
- install -c -m 644 $(CURDIR)/{AUTHORS,README,THANKS} $(CURDIR)/debian/mcl/usr/share/doc/mcl/
- mkdir $(CURDIR)/debian/mcl/usr/share/doc/mcl/scripts
- install -c -m 644 $(CURDIR)/scripts/clx* $(CURDIR)/debian/mcl/usr/share/doc/mcl/scripts/
-# # clean up unneeded docs
- $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/*txt
-# # process mcl-doc.install
- dh_install --sourcedir=debian/mcl
- dh_installdocs
-# # clean up files just copied to mcl-doc
- $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/{AUTHORS,README,THANKS}
- $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/*{html,ps,minimcl}
- $(RM) -r $(CURDIR)/debian/mcl/usr/share/doc/mcl/examples
- $(RM) -r $(CURDIR)/debian/mcl/usr/share/man/man[5,7]
-
-binary-indep: build install
- dh_installman
- # Fix broken manpages instead
- sed -i -e 's/^\(.TH "[cm][lc][mx]\) \+\(\w\)/\1\2/' \
- -e 's/^\([cm][lc][mx]\) \+\(\w\+ \\-\)/\1\2/' \
- $(CURDIR)/debian/$(pkg)/usr/share/man/man1/[cm]*.1
- dh_installchangelogs ChangeLog
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_shlibdeps
- dh_gencontrol
- dh_md5sums
- dh_builddeb -pmcl-doc
-
-
-binary-arch: build install
-# no need to call dh_installexamples: upstream takes care of
-# this in 'make install'
- dh_installman
- dh_installchangelogs ChangeLog
- dh_strip
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_shlibdeps
- dh_gencontrol
- dh_md5sums
- dh_builddeb -pmcl
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install configure config config-clean
Copied: trunk/packages/mcl/tags/1:12-068-1/debian/rules (from rev 8396, trunk/packages/mcl/trunk/debian/rules)
===================================================================
--- trunk/packages/mcl/tags/1:12-068-1/debian/rules (rev 0)
+++ trunk/packages/mcl/tags/1:12-068-1/debian/rules 2012-03-09 15:18:16 UTC (rev 9974)
@@ -0,0 +1,196 @@
+#!/usr/bin/make -f
+
+# based upon sample debian/rules that uses debhelper.
+# GNU copyright 1997 to 1999 by Joey Hess.
+
+# Uncomment this to turn on verbose mode.
+# export DH_VERBOSE=1
+
+include /usr/share/quilt/quilt.make
+
+pkg=mcl
+
+# allow bashism's in commandlines
+SHELL = /bin/bash
+
+# Debian Policy 10.1
+CFLAGS = -g -Wall
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+CFLAGS += -O0
+else
+CFLAGS += -O2
+endif
+INSTALL = install
+INSTALL_PROGRAM = $(INSTALL) -p -o root -g root -m 755
+ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
+INSTALL_PROGRAM += -s
+endif
+
+# variables to be used in configure invocation. see
+# autotools-dev/README.Debian.gz
+export DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+export DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+# use autoconf 2.52 or newer
+ifeq ($(DEB_BUILD_GNU_TYPE), $(DEB_HOST_GNU_TYPE))
+ confflags += --build $(DEB_HOST_GNU_TYPE)
+else
+ confflags += --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
+endif
+
+## Build BLAST parsing script mcxdeblast and the pipeline script mclblastline
+## (sources in src/alien/oxygen). It encapsulates all the stages of parsing,
+## matrix creation, running mcl, and formatting the result
+## into a single application.
+confflags += --enable-blast
+
+## add --enable-tribe to confflags to add the upstreams supplied tribe tools
+## (protein clustering stuff). This builds and installs the tools
+##
+## tribe-families tribe-matrix tribemcl tribe-parse
+##
+## We're not doing it since tribe-matrix segfaults, and the tools lackproper
+## manpages. Furthermore, the BLAST parsing scripts can be used in place of
+## the tribe module.
+
+# confflags += --enable-tribe
+
+## If you really want to suppress the citation reference printed by MCL (the
+## one which looks like
+##
+## Please cite:
+## Stijn van Dongen, Graph Clustering by Flow Simulation. PhD thesis,
+## University of Utrecht, May 2000.
+## ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/full.pdf
+## or http://micans.org/mcl/lit/svdthesis.pdf.gz)
+## OR
+## Stijn van Dongen, A cluster algorithm for graphs. Technical
+## Report INS-R0010, National Research Institute for Mathematics
+## and Computer Science in the Netherlands, Amsterdam, May 2000.
+## ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z
+## or http://micans.org/mcl/lit/INS-R0010.ps.Z)
+##
+## ), then this is the place to do it. Of course we honor the choice of
+## upstream here, and build as suggested by upsteam.
+
+# confflags += --disable-helpful-reminder
+
+config: config-stamp
+config-stamp:
+ dh_testdir
+
+# # Make sure we have fresh config.{sub,guess}, in order to make life
+# # more easy for porters to new architectures. See
+# # autotools-dev/README.Debian.gz
+ if [ -r /usr/share/misc/config.sub ] && [ ! -f autofoo/config.sub.backup ]; then \
+ mv -v autofoo/config.sub autofoo/config.sub.backup; \
+ cp -f /usr/share/misc/config.sub autofoo/config.sub; \
+ fi
+
+ if [ -r /usr/share/misc/config.guess ] && [ ! -f autofoo/config.guess.backup ]; then \
+ mv -v autofoo/config.guess autofoo/config.guess.backup; \
+ cp -f /usr/share/misc/config.guess autofoo/config.guess; \
+ fi
+
+ touch $@
+
+config-clean:
+ dh_testdir
+ dh_testroot
+
+ if [ -f autofoo/config.sub.backup ]; then \
+ mv -fv autofoo/config.sub.backup autofoo/config.sub; \
+ fi
+
+ if [ -f autofoo/config.guess.backup ]; then \
+ mv -fv autofoo/config.guess.backup autofoo/config.guess; \
+ fi
+
+ $(RM) config-stamp
+
+
+configure: config configure-stamp
+configure-stamp:
+ dh_testdir
+
+ ./configure \
+ $(confflags) \
+ --prefix=/usr \
+ --mandir=\$${prefix}/share/man \
+ --infodir=\$${prefix}/share/info
+
+ touch configure-stamp
+
+build: build-arch build-indep
+build-arch: build-stamp
+build-indep: build-stamp
+build-stamp: patch configure $(QUILT_STAMPFN)
+ dh_testdir
+
+ $(MAKE)
+
+ touch build-stamp
+
+clean: unpatch config-clean
+ dh_testdir
+ dh_testroot
+ $(RM) -f build-stamp configure-stamp
+
+ [ ! -f Makefile ] || $(MAKE) distclean
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+
+ $(MAKE) install DESTDIR=$(CURDIR)/debian/mcl
+# # install some extra stuff not installed by upstream
+ install -c -m 644 $(CURDIR)/{AUTHORS,README,THANKS} $(CURDIR)/debian/mcl/usr/share/doc/mcl/
+ mkdir $(CURDIR)/debian/mcl/usr/share/doc/mcl/scripts
+ install -c -m 644 $(CURDIR)/scripts/clx* $(CURDIR)/debian/mcl/usr/share/doc/mcl/scripts/
+# # clean up unneeded docs
+ $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/*txt
+# # process mcl-doc.install
+ dh_install --sourcedir=debian/mcl
+ dh_installdocs
+# # clean up files just copied to mcl-doc
+ $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/{AUTHORS,README,THANKS}
+ $(RM) $(CURDIR)/debian/mcl/usr/share/doc/mcl/*{html,ps,minimcl}
+ $(RM) -r $(CURDIR)/debian/mcl/usr/share/doc/mcl/examples
+ $(RM) -r $(CURDIR)/debian/mcl/usr/share/man/man[5,7]
+
+binary-indep: build install
+ dh_installman
+ # Fix broken manpages instead
+ sed -i -e 's/^\(.TH "[cm][lc][mx]\) \+\(\w\)/\1\2/' \
+ -e 's/^\([cm][lc][mx]\) \+\(\w\+ \\-\)/\1\2/' \
+ $(CURDIR)/debian/$(pkg)/usr/share/man/man1/[cm]*.1
+ dh_installchangelogs ChangeLog
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb -pmcl-doc
+
+
+binary-arch: build install
+# no need to call dh_installexamples: upstream takes care of
+# this in 'make install'
+ dh_installman
+ dh_installchangelogs ChangeLog
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb -pmcl
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure config config-clean
More information about the debian-med-commit
mailing list