[med-svn] r10213 - trunk/packages/rostlab/librostlab-blast/trunk/debian

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-03-30 17:31:09 +0000 (Fri, 30 Mar 2012)
New Revision: 10213

Added:
   trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.doc-base
Modified:
   trunk/packages/rostlab/librostlab-blast/trunk/debian/control
   trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.docs
   trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.lintian-overrides
   trunk/packages/rostlab/librostlab-blast/trunk/debian/rules
Log:
explained Lintian override in override file; added pdf documentation to doc-base

Modified: trunk/packages/rostlab/librostlab-blast/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/librostlab-blast/trunk/debian/control	2012-03-30 17:28:06 UTC (rev 10212)
+++ trunk/packages/rostlab/librostlab-blast/trunk/debian/control	2012-03-30 17:31:09 UTC (rev 10213)
@@ -1,8 +1,8 @@
 Source: librostlab-blast
-Priority: extra
+Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Laszlo Kajan <lkajan at rostlab.org>
-Build-Depends: debhelper (>= 7.0.50~), autotools-dev, bison, flex, graphviz, librostlab3-dev
+Build-Depends: debhelper (>= 7.0.50~), autotools-dev, bison, doxygen, flex, graphviz, latex-xcolor, librostlab3-dev, texlive-fonts-recommended, texlive-latex-extra
 Standards-Version: 3.9.3
 Section: libs
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/librostlab-blast/trunk/

Added: trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.doc-base
===================================================================
--- trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.doc-base	                        (rev 0)
+++ trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.doc-base	2012-03-30 17:31:09 UTC (rev 10213)
@@ -0,0 +1,14 @@
+Document: librostlab-blast
+Title: librostlab-blast Documentation
+Author: Laszlo Kajan <lkajan at rostlab.org>
+Abstract: very fast C++ library for parsing NCBI BLAST output
+ This package provides a very fast library for parsing the NCBI BLAST default
+ (-m 0) output.
+Section: Science/Biology
+
+Format: html
+Files: /usr/share/doc/librostlab-blast-doc/html/*.html
+Index: /usr/share/doc/librostlab-blast-doc/html/index.html
+
+Format: PDF
+Files: /usr/share/doc/librostlab-blast-doc/librostlab-blast.pdf.gz

Modified: trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.docs
===================================================================
--- trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.docs	2012-03-30 17:28:06 UTC (rev 10212)
+++ trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.docs	2012-03-30 17:31:09 UTC (rev 10213)
@@ -1,2 +1,3 @@
 doxygen-doc/html/
+doxygen-doc/librostlab-blast.pdf
 lib/librostlab-blast.tag

Modified: trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.lintian-overrides
===================================================================
--- trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.lintian-overrides	2012-03-30 17:28:06 UTC (rev 10212)
+++ trunk/packages/rostlab/librostlab-blast/trunk/debian/librostlab-blast-doc.lintian-overrides	2012-03-30 17:31:09 UTC (rev 10213)
@@ -1 +1,21 @@
+# Laszlo Kajan <lkajan at rostlab.org>:
+# This jquery.js is copied into the html documentation by the doxygen
+# version currently in unstable (1.7.6.1). Earlier versions of Doxygen
+# (e.g. i n stable) do not copy a jquery.js there.  The jquery.js copied
+# by doxygen is much earlier (1.3.2) than the current version in unstable
+# (1.7.2-1). The jquery.js from doxygen actually is a minified bundle of
+# several things:
+#  * jQuery JavaScript Library v1.3.2 http://jquery.com/
+#  * Sizzle CSS Selector Engine - v0.9.3 http://sizzlejs.com/
+#  * jQuery hashchange event - v1.3 - 7/21/2010
+#    http://benalman.com/projects/jquery-hashchange-plugin/
+#  * jQuery UI 1.7.2 http://docs.jquery.com/UI
+#  * jQuery UI Resizable 1.7.2 http://docs.jquery.com/UI/Resizables
+#  * jQuery.ScrollTo - Easy element scrolling using jQuery.
+#
+# Out of these Sizzle is not packaged for Debian, neither is the hashchange
+# event or jQuery.ScrollTo, as far as I can tell.
+# 
+# Therefore, it is necessary to keep this jquery.js instead of linking to the
+# file with the same name from libjs-jquery.
 librostlab-blast-doc: embedded-javascript-library usr/share/doc/librostlab-blast-doc/html/jquery.js

Modified: trunk/packages/rostlab/librostlab-blast/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/librostlab-blast/trunk/debian/rules	2012-03-30 17:28:06 UTC (rev 10212)
+++ trunk/packages/rostlab/librostlab-blast/trunk/debian/rules	2012-03-30 17:31:09 UTC (rev 10213)
@@ -6,6 +6,10 @@
 %:
 	dh $@ --parallel
 
+.PHONY: override_dh_auto_configure
+override_dh_auto_configure:
+	dh_auto_configure --parallel -- --enable-doxygen-dot --enable-doxygen-pdf
+
 .PHONY: override_dh_auto_build
 override_dh_auto_build:
 	dh_auto_build --parallel