[med-svn] r10224 - trunk/packages/rnahybrid/trunk/debian
Andreas Tille
tille at alioth.debian.org
Sat Mar 31 21:39:39 UTC 2012
Author: tille
Date: 2012-03-31 21:39:39 +0000 (Sat, 31 Mar 2012)
New Revision: 10224
Modified:
trunk/packages/rnahybrid/trunk/debian/changelog
trunk/packages/rnahybrid/trunk/debian/compat
trunk/packages/rnahybrid/trunk/debian/control
trunk/packages/rnahybrid/trunk/debian/rules
Log:
Short dh in debian/rules; debhelper 9
Modified: trunk/packages/rnahybrid/trunk/debian/changelog
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/changelog 2012-03-31 21:03:42 UTC (rev 10223)
+++ trunk/packages/rnahybrid/trunk/debian/changelog 2012-03-31 21:39:39 UTC (rev 10224)
@@ -1,13 +1,14 @@
rnahybrid (2.1-3) UNRELEASED; urgency=low
[ Charles Plessy ]
- * Documented informations in debian/upstream
- * Removed mention of the bibliographic reference in debian/controlâ
+ * Documented information in debian/upstream
+ * Removed mention of the bibliographic reference in debian/control
[ Andreas Tille ]
* debian/source/format: 3.0 (quilt)
* debian/control: Standards-Version: 3.9.3 (no changes needed)
- * debhelper 8 (control+compat)
+ * debhelper 9 (control+compat)
+ * debian/rules: short dh
-- Andreas Tille <tille at debian.org> Sat, 31 Mar 2012 22:52:18 +0200
Modified: trunk/packages/rnahybrid/trunk/debian/compat
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/compat 2012-03-31 21:03:42 UTC (rev 10223)
+++ trunk/packages/rnahybrid/trunk/debian/compat 2012-03-31 21:39:39 UTC (rev 10224)
@@ -1 +1 @@
-8
+9
Modified: trunk/packages/rnahybrid/trunk/debian/control
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/control 2012-03-31 21:03:42 UTC (rev 10223)
+++ trunk/packages/rnahybrid/trunk/debian/control 2012-03-31 21:39:39 UTC (rev 10224)
@@ -5,7 +5,7 @@
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy at debian.org>,
Andreas Tille <tille at debian.org>
-Build-Depends: debhelper (>= 8), autotools-dev, libg2-dev
+Build-Depends: debhelper (>= 9), autotools-dev, libg2-dev
Standards-Version: 3.9.3
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rnahybrid/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rnahybrid/trunk/
Modified: trunk/packages/rnahybrid/trunk/debian/rules
===================================================================
--- trunk/packages/rnahybrid/trunk/debian/rules 2012-03-31 21:03:42 UTC (rev 10223)
+++ trunk/packages/rnahybrid/trunk/debian/rules 2012-03-31 21:39:39 UTC (rev 10224)
@@ -1,49 +1,18 @@
#!/usr/bin/make -f
# -*- makefile -*-
-# These are used for cross-compiling and for saving the configure script
-# from having to guess our platform (since we know it already)
-DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
-DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+%:
+ dh $@ --with autotools_dev
-CFLAGS = -Wall -g
+override_dh_auto_configure:
+ dh_auto_configure -- --host=$(DEB_HOST_GNU_TYPE) \
+ --build=$(DEB_BUILD_GNU_TYPE) \
+ --prefix=/usr \
+ --mandir=\$${prefix}/share/man \
+ CFLAGS="$(CFLAGS)" \
+ LDFLAGS="-Wl,-z,defs"
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
- CFLAGS += -O0
-else
- CFLAGS += -O2
-endif
-
-config.status: configure
- dh_testdir
-ifneq "$(wildcard /usr/share/misc/config.sub)" ""
- cp -f /usr/share/misc/config.sub config.sub
-endif
-ifneq "$(wildcard /usr/share/misc/config.guess)" ""
- cp -f /usr/share/misc/config.guess config.guess
-endif
- ./configure --host=$(DEB_HOST_GNU_TYPE)\
- --build=$(DEB_BUILD_GNU_TYPE)\
- --prefix=/usr\
- --mandir=\$${prefix}/share/man\
- CFLAGS="$(CFLAGS)"\
- LDFLAGS="-Wl,-z,defs"
-
-build: build-stamp
-
-build-stamp: config.status
- dh_testdir
- $(MAKE)
- touch $@
-
-clean: config.status
- dh_testdir
- dh_testroot
- rm -f build-stamp
- $(MAKE) distclean
- dh_clean config.sub config.guess
-
-test: build
+override_dh_auto_test:
src/RNAhybrid -s 3utr_worm -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
src/RNAcalibrate -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
src/RNAhybrid -d 1.9,0.28 -t examples/cel-hbl-1.fasta -q examples/cel-let-7.fasta
@@ -51,31 +20,3 @@
src/RNAcalibrate -f 2,7 -d examples/3UTR_worm.freq -k 50 -l 50,30 -q examples/cel-let-7.fasta
src/RNAhybrid -s 3utr_worm -t examples/cbr-hbl-1.fasta -q examples/cel-let-7.fasta
-src/RNAeffective -k 30 -s -t examples/hbl-1.fasta -q examples/cel-let-7.fasta
-
-install: build test
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
- $(MAKE) DESTDIR=$(CURDIR)/debian/rnahybrid install
-
-binary-indep: build install
-
-binary-arch: build install
- dh_testdir
- dh_testroot
- dh_installchangelogs ChangeLog
- dh_installdocs README
- dh_installexamples examples/*
- dh_link
- dh_strip
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_shlibdeps
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
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