[med-svn] [SCM] bowtie2 branch, master, updated. upstream/2.0.0-beta5-18-g2f459ff

[Alexandre Mestiashvili]

The following commit has been merged in the master branch:
commit 2f459ff23e4544f9fd469c9b51b7d390221dcabd
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Wed May 9 14:47:46 2012 +0200

    updated changelog to reflect git changes

diff --git a/debian/changelog b/debian/changelog
index 8d6ee53..756a464 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -10,6 +10,12 @@ bowtie2 (2.0.0-beta5-2) UNRELEASED; urgency=low
   * debian/patches/fix_makefile_machine_detection.patch + debian/rules:
     prevent -mXX and -msse2 switches for non Intel architectures
 
+  [ Alexandre Mestiashvili ]
+  * debian/patches/bowtie2_gcc4.7.patch Closes: #672090
+  * updated DEP3 headers
+  * bumperd Standards-Version to 3.9.3
+  * uname -m doesn't detect 32 bit chroot env - updated patcH
+
  -- Andreas Tille <tille at debian.org>  Thu, 26 Apr 2012 13:59:54 +0200
 
 bowtie2 (2.0.0-beta5-1) unstable; urgency=low

-- 
ultrafast memory-efficient short read aligner