[med-svn] r10810 - in trunk/packages: . tigr-glimmer-mg tigr-glimmer-mg/debian

[Andreas Tille]

Author: tille
Date: 2012-05-10 09:02:35 +0000 (Thu, 10 May 2012)
New Revision: 10810

Added:
   trunk/packages/tigr-glimmer-mg/
   trunk/packages/tigr-glimmer-mg/debian/
   trunk/packages/tigr-glimmer-mg/debian/changelog
   trunk/packages/tigr-glimmer-mg/debian/control
   trunk/packages/tigr-glimmer-mg/debian/upstream
Log:
Should have been the citation of the day but I rather stumbled about a potentially new target - just keep a skeleton for metadata gatherer of prospective packages


Added: trunk/packages/tigr-glimmer-mg/debian/changelog
===================================================================
--- trunk/packages/tigr-glimmer-mg/debian/changelog	                        (rev 0)
+++ trunk/packages/tigr-glimmer-mg/debian/changelog	2012-05-10 09:02:35 UTC (rev 10810)
@@ -0,0 +1,5 @@
+tigr-glimmer-mg (0.2.2-2) UNRELEASED; urgency=low
+
+  * Initial Release (Closes: #)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 10 May 2012 10:55:37 +0200

Added: trunk/packages/tigr-glimmer-mg/debian/control
===================================================================
--- trunk/packages/tigr-glimmer-mg/debian/control	                        (rev 0)
+++ trunk/packages/tigr-glimmer-mg/debian/control	2012-05-10 09:02:35 UTC (rev 10810)
@@ -0,0 +1,21 @@
+Source: tigr-glimmer-mg
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), docbook-to-man
+Standards-Version: 3.9.3
+Homepage: http://www.cbcb.umd.edu/software/glimmer-mg/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/tigr-glimmer-mg/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/tigr-glimmer-mg/trunk/
+
+Package: tigr-glimmer-mg
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: finding genes in environmental shotgun DNA sequences
+ Glimmer-MG is a system for finding genes in environmental shotgun DNA
+ sequences. Glimmer-MG (Gene Locator and Interpolated Markov ModelER -
+ MetaGenomics) uses interpolated Markov models (IMMs) to identify the
+ coding regions and distinguish them from noncoding DNA.

Added: trunk/packages/tigr-glimmer-mg/debian/upstream
===================================================================
--- trunk/packages/tigr-glimmer-mg/debian/upstream	                        (rev 0)
+++ trunk/packages/tigr-glimmer-mg/debian/upstream	2012-05-10 09:02:35 UTC (rev 10810)
@@ -0,0 +1,11 @@
+Reference:
+  Author: David R Kelley and Bo Liu and Arthur L Delcher and Mihai Pop and Steven L Salzberg
+  Title: Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering
+  Journal: Nucleic Acids Research
+  Year: 2012
+  Volume: 40
+  Number: 1
+  Pages: e9
+  DOI: 10.1093/nar/gkr1067
+  PMID: 22102569
+  URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245904/