[med-svn] [SCM] tophat branch, master, updated. debian/1.4.1-1-21-g9b8f8b2

[Andreas Tille]

The following commit has been merged in the master branch:
commit 757bcd522a53799e2e8caa0c09bd3c575f5cd666
Author: Andreas Tille <tille at debian.org>
Date:   Fri May 11 11:20:07 2012 +0200

    Add some manpages via help2man - please follow these examples and add more

diff --git a/debian/changelog b/debian/changelog
index bc0ad4f..819b0c0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ tophat (2.0.0-2) unstable; urgency=low
   * debian/patces/bashism_in_shell_script.patch: Fix bashism in shell script
     Closes: #671813
   * debhelper 9 (control+compat)
+  * debian/rules: Create some manpages using help2man
 
  -- Andreas Tille <tille at debian.org>  Sun, 06 May 2012 13:26:38 +0200
 
diff --git a/debian/control b/debian/control
index d27212c..cd9f1f0 100644
--- a/debian/control
+++ b/debian/control
@@ -8,7 +8,7 @@ Uploaders: Carlos Borroto <carlos.borroto at gmail.com>,
  Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 9), autotools-dev, libbam-dev (>=0.1.16),
  zlib1g-dev, dh-autoreconf, python (>=2.6.6-3~), seqan-dev (>= 1.3~),
- libboost-thread-dev
+ libboost-thread-dev, help2man
 Standards-Version: 3.9.3
 Homepage: http://tophat.cbcb.umd.edu/
 Vcs-Git: git://git.debian.org/debian-med/tophat.git
diff --git a/debian/rules b/debian/rules
index 4ec2e3b..82e712a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -3,8 +3,27 @@
 # Uncomment this to turn on verbose mode.
 export DH_VERBOSE=1
 
+pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+version=$(shell dpkg-parsechangelog -ldebian/changelog | grep Version: | cut -f2 -d' ' | cut -f1 -d- )
+mandir=$(CURDIR)/debian/$(pkg)/usr/share/man/man1
+bindir=$(CURDIR)/debian/$(pkg)/usr/bin
+
 %:
 	dh $@ --with autoreconf
 
 override_dh_builddeb:
 	dh_builddeb -- -Z xz
+
+override_dh_auto_install:
+	dh_auto_install
+
+	# try to create man pages whereever possible
+	mkdir -p $(mandir)
+	help2man --no-info --no-discard-stderr \
+	    --name='converts bam directly into fastx' \
+	    --version-string="$(version)" \
+	         $(bindir)/bam2fastx > $(mandir)/bam2fastx.1
+	help2man --no-info --no-discard-stderr \
+	    --name='TopHat maps short sequences from spliced transcripts to whole genomes' \
+	    --version-string="$(version)" \
+	         $(bindir)/tophat > $(mandir)/tophat.1

-- 
A spliced read mapper for RNA-Seq