[med-svn] r10874 - trunk/packages/paml/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-05-15 09:50:12 +0000 (Tue, 15 May 2012)
New Revision: 10874

Added:
   trunk/packages/paml/trunk/debian/paml.links
Removed:
   trunk/packages/paml/trunk/debian/paml.dirs
Modified:
   trunk/packages/paml/trunk/debian/changelog
   trunk/packages/paml/trunk/debian/paml-doc.docs
   trunk/packages/paml/trunk/debian/paml.docs
   trunk/packages/paml/trunk/debian/paml.install
Log:
!!! Suggestion how to deal with name space pollution: install to /usr/lib/debian-med/bin and symlink to usr/bin with the original names if possible - otherwise use prefix; also fixed some documentation issues to enable building the package


Modified: trunk/packages/paml/trunk/debian/changelog
===================================================================
--- trunk/packages/paml/trunk/debian/changelog	2012-05-15 09:20:13 UTC (rev 10873)
+++ trunk/packages/paml/trunk/debian/changelog	2012-05-15 09:50:12 UTC (rev 10874)
@@ -8,6 +8,16 @@
   * Fixed watch file
   * debian/control: Standards-Version: 3.9.3 (no changes needed)
   * debian/rules: remove useless dh-make template
+  * debian/paml.dirs: removed because unneeded
+  * debian/{install,links}: install all binaries to
+    /usr/lib/debian-med/bin and symlink to /usr/bin with the
+    exception of evolver which has a name space conflict.  This
+    is renamed to /usr/bin/paml-evolver
+    Closes: #661519
+  * debian/{paml.docs,paml-doc.docs}:
+     - Adapted to new names
+     - do not duplicate the same files into both packages (paml and
+       paml-doc)
 
  -- Andreas Tille <tille at debian.org>  Tue, 15 May 2012 11:10:59 +0200
 

Modified: trunk/packages/paml/trunk/debian/paml-doc.docs
===================================================================
--- trunk/packages/paml/trunk/debian/paml-doc.docs	2012-05-15 09:20:13 UTC (rev 10873)
+++ trunk/packages/paml/trunk/debian/paml-doc.docs	2012-05-15 09:50:12 UTC (rev 10874)
@@ -1,4 +1 @@
-doc/MCMCtreeDoc.pdf
-doc/pamlDOC.pdf
-doc/pamlFAQs.pdf
-doc/pamlHistory.txt
+doc/*

Deleted: trunk/packages/paml/trunk/debian/paml.dirs
===================================================================
--- trunk/packages/paml/trunk/debian/paml.dirs	2012-05-15 09:20:13 UTC (rev 10873)
+++ trunk/packages/paml/trunk/debian/paml.dirs	2012-05-15 09:50:12 UTC (rev 10874)
@@ -1 +0,0 @@
-usr/bin

Modified: trunk/packages/paml/trunk/debian/paml.docs
===================================================================
--- trunk/packages/paml/trunk/debian/paml.docs	2012-05-15 09:20:13 UTC (rev 10873)
+++ trunk/packages/paml/trunk/debian/paml.docs	2012-05-15 09:50:12 UTC (rev 10874)
@@ -1,6 +1,2 @@
 GeneticCode.txt
 README.txt
-doc/MCMCtreeDoc.pdf
-doc/pamlDOC.pdf
-doc/pamlFAQs.pdf
-doc/pamlHistory.txt

Modified: trunk/packages/paml/trunk/debian/paml.install
===================================================================
--- trunk/packages/paml/trunk/debian/paml.install	2012-05-15 09:20:13 UTC (rev 10873)
+++ trunk/packages/paml/trunk/debian/paml.install	2012-05-15 09:50:12 UTC (rev 10874)
@@ -1,8 +1,8 @@
-usr/bin/baseml /usr/bin/
-usr/bin/basemlg /usr/bin/
-usr/bin/chi2 /usr/bin/
-usr/bin/codeml /usr/bin/
-usr/bin/evolver /usr/bin/
-usr/bin/pamp /usr/bin/
-usr/bin/yn00 /usr/bin/
+usr/bin/baseml	usr/lib/debian-med/bin
+usr/bin/basemlg	usr/lib/debian-med/bin
+usr/bin/chi2	usr/lib/debian-med/bin
+usr/bin/codeml	usr/lib/debian-med/bin
+usr/bin/evolver	usr/lib/debian-med/bin
+usr/bin/pamp	usr/lib/debian-med/bin
+usr/bin/yn00	usr/lib/debian-med/bin
 

Added: trunk/packages/paml/trunk/debian/paml.links
===================================================================
--- trunk/packages/paml/trunk/debian/paml.links	                        (rev 0)
+++ trunk/packages/paml/trunk/debian/paml.links	2012-05-15 09:50:12 UTC (rev 10874)
@@ -0,0 +1,8 @@
+usr/lib/debian-med/bin/baseml	usr/bin/baseml
+usr/lib/debian-med/bin/basemlg	usr/bin/basemlg
+usr/lib/debian-med/bin/chi2	usr/bin/chi2
+usr/lib/debian-med/bin/codeml	usr/bin/codeml
+usr/lib/debian-med/bin/evolver	usr/bin/paml-evolver
+usr/lib/debian-med/bin/pamp	usr/bin/pamp
+usr/lib/debian-med/bin/yn00	usr/bin/yn00
+