[med-svn] r10925 - trunk/packages/king/trunk/debian
Andreas Tille
tille at alioth.debian.org
Mon May 21 14:08:23 UTC 2012
Author: tille
Date: 2012-05-21 14:08:23 +0000 (Mon, 21 May 2012)
New Revision: 10925
Modified:
trunk/packages/king/trunk/debian/README.source
trunk/packages/king/trunk/debian/changelog
Log:
Explain handling of ndft files as requested by ftpmaster
Modified: trunk/packages/king/trunk/debian/README.source
===================================================================
--- trunk/packages/king/trunk/debian/README.source 2012-05-21 12:46:50 UTC (rev 10924)
+++ trunk/packages/king/trunk/debian/README.source 2012-05-21 14:08:23 UTC (rev 10925)
@@ -9,13 +9,37 @@
Upstream provides a ZIP file full of prebuilded binary files (in parts
without source. So this archive was heavily stripped using the script
-debian/get-orig-source. Moreover a component (molikin) was missing in
-the upstream source and was sended by the authors to Andreas Tille
-<tille at debian.org>. To enable building the package this zip archive is
-temporarily provided at
- http://people.debian.org/~tille/packages/king/molikin.zip
-The debian/get-orig-source script will only download this in case it
-is really missing in the upstream source - so may be with next upstream
-release this workaround will be dropped automatically.
+debian/get-orig-source.
+The source tarball contains some binarie files and the handling of these
+is described in a mail from upstream which can be read here:
+
+ http://lists.alioth.debian.org/pipermail/debian-med-packaging/2012-May/015269.html
+
+Here is a copy of this mail:
+
+ Date: Fri, 4 May 2012 10:46:35 -0400
+ From: Ian Davis<ian.w.davis at gmail.com>
+ To: Andreas Tille<tille at debian.org>
+ Cc: Vincent Chen<vbc3 at duke.edu>, "Vincent B. Chen"<vincent.chen at duke.edu>,
+ Debian Med Packaging Team<debian-med-packaging at lists.alioth.debian.org>
+ Subject: Re: What are ndft files and how to edit these
+
+ Hi Andreas,
+
+ The ndft files are N-dimensional scalar fields in binary format,
+ representing the statistical density of various side-chain conformations.
+ See http://kinemage.biochem.duke.edu/databases/rotamer.php, especially the
+ Son Of download and its README file (
+ http://kinemage.biochem.duke.edu/databases/READMEforTop500angleData.html).
+ The binary format is straightforward but made up, you'd have to read the
+ code in that download to reverse engineer the format, I don't remember it
+ any more :) I think I called that package Silk, the one that contains the
+ reader/writer code.
+
+ The files are used by tools for rebuilding protein structure, to judge how
+ (un)favorable a proposed conformation is. Without them, those tools won't
+ work, though other parts of KiNG may (or may not, depends how good my error
+ handling code was).
+
-- Andreas Tille <tille at debian.org> Wed, 18 Apr 2012 14:27:49 +0200
Modified: trunk/packages/king/trunk/debian/changelog
===================================================================
--- trunk/packages/king/trunk/debian/changelog 2012-05-21 12:46:50 UTC (rev 10924)
+++ trunk/packages/king/trunk/debian/changelog 2012-05-21 14:08:23 UTC (rev 10925)
@@ -3,6 +3,9 @@
* New upstream version
* debian/get-orig-source: This version includes molikin so the separate
fetching of this source is not needed any more.
+ * debian/README.source:
+ - drop remark about missing parts of source code
+ - explain handling of ndft files
-- Andreas Tille <tille at debian.org> Mon, 21 May 2012 14:45:14 +0200
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