[med-svn] r11019 - in trunk/packages: . crossbow crossbow/trunk crossbow/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-05-27 07:32:09 +0000 (Sun, 27 May 2012)
New Revision: 11019

Added:
   trunk/packages/crossbow/
   trunk/packages/crossbow/trunk/
   trunk/packages/crossbow/trunk/debian/
   trunk/packages/crossbow/trunk/debian/changelog
   trunk/packages/crossbow/trunk/debian/compat
   trunk/packages/crossbow/trunk/debian/control
   trunk/packages/crossbow/trunk/debian/copyright
   trunk/packages/crossbow/trunk/debian/rules
   trunk/packages/crossbow/trunk/debian/upstream
Log:
Move information from task file to SVN code


Added: trunk/packages/crossbow/trunk/debian/changelog
===================================================================
--- trunk/packages/crossbow/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/changelog	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1,5 @@
+crossbow (1.1.2-1) unstable; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille at debian.org>  Sun, 27 May 2012 09:24:36 +0200

Added: trunk/packages/crossbow/trunk/debian/compat
===================================================================
--- trunk/packages/crossbow/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/compat	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1 @@
+9

Added: trunk/packages/crossbow/trunk/debian/control
===================================================================
--- trunk/packages/crossbow/trunk/debian/control	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/control	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1,23 @@
+Source: crossbow
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://bowtie-bio.sourceforge.net/crossbow
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/crossbow/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/crossbow/trunk/
+
+Package: crossbow
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Genotyping from short reads using cloud computing
+ Crossbow is a scalable software pipeline for whole genome resequencing
+ analysis. It combines Bowtie, an ultrafast and memory efficient short read
+ aligner, and SoapSNP, an accurate genotyper, within Hadoop to distribute and
+ accelerate the computation with many nodes. The pipeline can accurately analyze
+ over 35x coverage of a human genome in one day on a 10-node local cluster, or
+ in 3 hours for about $100 using a 40-node, 320-core cluster rented from
+ Amazon's EC2 utility computing service.

Added: trunk/packages/crossbow/trunk/debian/copyright
===================================================================
--- trunk/packages/crossbow/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/copyright	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1,10 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: http://sourceforge.net/projects/bowtie-bio/files/crossbow/
+
+Files: *
+Copyright: © 2010-2011 <upstream>
+License: Artistic
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: Artistic

Added: trunk/packages/crossbow/trunk/debian/rules
===================================================================
--- trunk/packages/crossbow/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/rules	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/crossbow/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/crossbow/trunk/debian/upstream
===================================================================
--- trunk/packages/crossbow/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/crossbow/trunk/debian/upstream	2012-05-27 07:32:09 UTC (rev 11019)
@@ -0,0 +1,11 @@
+Reference:
+  Author: Ben Langmead and Michael C Schatz and Jimmy Lin and Mihai Pop and Steven L Salzberg
+  Title: Searching for SNPs with cloud computing
+  Journal: Genome Biology
+  Year: 2009
+  Volume: 10
+  Pages: R134
+  DOI: 10.1186/gb-2009-10-11-r134
+  PMID: 19930550
+  URL: http://genomebiology.com/2009/10/11/R134
+  eprint: http://genomebiology.com/content/pdf/gb-2009-10-11-r134.pdf