[med-svn] r11044 - in trunk/packages: . clonalorigin clonalorigin/trunk clonalorigin/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-05-28 15:54:58 +0000 (Mon, 28 May 2012)
New Revision: 11044

Added:
   trunk/packages/clonalorigin/
   trunk/packages/clonalorigin/trunk/
   trunk/packages/clonalorigin/trunk/debian/
   trunk/packages/clonalorigin/trunk/debian/changelog
   trunk/packages/clonalorigin/trunk/debian/compat
   trunk/packages/clonalorigin/trunk/debian/control
   trunk/packages/clonalorigin/trunk/debian/copyright
   trunk/packages/clonalorigin/trunk/debian/rules
   trunk/packages/clonalorigin/trunk/debian/upstream
Log:
Take over information from tasks file into machine readable packaging files


Added: trunk/packages/clonalorigin/trunk/debian/changelog
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/changelog	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1,5 @@
+clonalorigin (0.0.20101011svn_r29-1) unstable; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille at debian.org>  Mon, 28 May 2012 17:47:37 +0200

Added: trunk/packages/clonalorigin/trunk/debian/compat
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/compat	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1 @@
+9

Added: trunk/packages/clonalorigin/trunk/debian/control
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/control	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/control	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1,26 @@
+Source: clonalorigin
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://code.google.com/p/clonalorigin/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clonalorigin/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/clonalorigin/trunk/
+
+Package: clonalorigin
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: inference of homologous recombination in bacteria using whole genome sequences
+ Bacteria, unlike us, can reproduce on their own. They do however have
+ mechanisms that transfer DNA between organisms, a process more formally
+ known as recombination. The mechanisms by which recombination takes
+ place have been studied extensively in the laboratory but much remains
+ to be understood concerning how, when and where recombination takes
+ place within natural populations of bacteria and how it helps them to
+ adapt to new environments. ClonalOrigin performs a comparative analysis
+ of the sequences of a sample of bacterial genomes in order to
+ reconstruct the recombination events that have taken place in their
+ ancestry.

Added: trunk/packages/clonalorigin/trunk/debian/copyright
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/copyright	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Xavier Didelot <xavier.didelot at gmail.com>
+Source: http://code.google.com/p/clonalorigin/wiki/Download_And_Install_ClonalOrigin
+
+Files: *
+Copyright: © 2008-2010 Xavier Didelot, Aaron Darling, et. al.
+License: GPL-v3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPL-v3

Added: trunk/packages/clonalorigin/trunk/debian/rules
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/rules	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/clonalorigin/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/clonalorigin/trunk/debian/upstream
===================================================================
--- trunk/packages/clonalorigin/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/clonalorigin/trunk/debian/upstream	2012-05-28 15:54:58 UTC (rev 11044)
@@ -0,0 +1,12 @@
+Reference:
+  Author: Xavier Didelot and Daniel Lawson and Aaron Darling and Daniel Falush
+  Title: Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences
+  Journal: Genetics
+  Year: 2010
+  Volume: 186
+  Number: 4
+  Pages: 1435-1449
+  DOI: 10.1534/genetics.110.120121
+  PMID: 20923983
+  URL: http://www.genetics.org/content/186/4/1435.abstract
+  eprint: http://www.genetics.org/content/186/4/1435.full.pdf+html