[med-svn] r11069 - in trunk/packages: . ray-denovoassembler ray-denovoassembler/trunk ray-denovoassembler/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-05-29 12:29:49 +0000 (Tue, 29 May 2012)
New Revision: 11069

Added:
   trunk/packages/ray-denovoassembler/
   trunk/packages/ray-denovoassembler/trunk/
   trunk/packages/ray-denovoassembler/trunk/debian/
   trunk/packages/ray-denovoassembler/trunk/debian/changelog
   trunk/packages/ray-denovoassembler/trunk/debian/compat
   trunk/packages/ray-denovoassembler/trunk/debian/control
   trunk/packages/ray-denovoassembler/trunk/debian/copyright
   trunk/packages/ray-denovoassembler/trunk/debian/rules
   trunk/packages/ray-denovoassembler/trunk/debian/upstream
Log:
Inject data from task file into SVN machine readable files


Added: trunk/packages/ray-denovoassembler/trunk/debian/changelog
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/changelog	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1,5 @@
+ray-denovoassembler (2.0.0-rc7-1) unstable; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille at debian.org>  Tue, 29 May 2012 14:23:29 +0200

Added: trunk/packages/ray-denovoassembler/trunk/debian/compat
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/compat	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1 @@
+9

Added: trunk/packages/ray-denovoassembler/trunk/debian/control
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/control	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/control	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1,19 @@
+Source: ray-denovoassembler
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://sourceforge.net/projects/denovoassembler/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ray-denovoassembler/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ray-denovoassembler/trunk/
+
+Package: ray-denovoassembler
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: computes de novo genome assemblies of next-gen sequencing data
+ Ray is a paralleled computer-controlled software that computes de novo
+ genome assemblies of next-gen sequencing data using message passing
+ interface.

Added: trunk/packages/ray-denovoassembler/trunk/debian/copyright
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/copyright	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Ray
+Source: http://sourceforge.net/projects/denovoassembler/files/
+
+Files: *
+Copyright: © 2010-2012 Sébastien Boisvert
+License: GPLv3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPLv3

Added: trunk/packages/ray-denovoassembler/trunk/debian/rules
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/rules	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/ray-denovoassembler/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/ray-denovoassembler/trunk/debian/upstream
===================================================================
--- trunk/packages/ray-denovoassembler/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/ray-denovoassembler/trunk/debian/upstream	2012-05-29 12:29:49 UTC (rev 11069)
@@ -0,0 +1,12 @@
+Reference:
+  Author: Sébastien Boisvert and François Laviolette and Jacques Corbeil
+  Title: "Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies"
+  Journal: Journal of Computational Biology
+  Year: 2010
+  Volume: 17
+  Number: 11
+  Pages: 1519-1533
+  DOI: 10.1089/cmb.2009.0238
+  PMID: 20958248
+  URL: http://online.liebertpub.com/doi/abs/10.1089/cmb.2009.0238
+  eprint: http://online.liebertpub.com/doi/pdfplus/10.1089/cmb.2009.0238