[med-svn] r11117 - in trunk/packages/strap-base/trunk/debian: . bin

[Christoph Gille]

Author: christophgil-guest
Date: 2012-05-31 00:01:57 +0000 (Thu, 31 May 2012)
New Revision: 11117

Modified:
   trunk/packages/strap-base/trunk/debian/bin/strap-protein-alignment
   trunk/packages/strap-base/trunk/debian/changelog
   trunk/packages/strap-base/trunk/debian/control
   trunk/packages/strap-base/trunk/debian/copyright
Log:


Modified: trunk/packages/strap-base/trunk/debian/bin/strap-protein-alignment
===================================================================
--- trunk/packages/strap-base/trunk/debian/bin/strap-protein-alignment	2012-05-30 23:25:38 UTC (rev 11116)
+++ trunk/packages/strap-base/trunk/debian/bin/strap-protein-alignment	2012-05-31 00:01:57 UTC (rev 11117)
@@ -24,7 +24,7 @@
 echo which would set heap size to 500 Megabytes.
 echo
 
-EXEC="$JAVA_HOME/bin/java $xmx -cp $CP charite.christo.strap.Strap -useDebian -warnInstall=debian $S3D -a3d=mustang -aligner2=kalign -probeWebProxy -stdout -askUpload  $*"
+EXEC="$JAVA_HOME/bin/java $xmx -cp $CP charite.christo.strap.Strap -useDebian -warnInstall=debian $S3D -a3d=mustang -aligner2=kalign -v3d=pymol -probeWebProxy -stdout -askUpload  $*"
  
 echo
 echo $EXEC

Modified: trunk/packages/strap-base/trunk/debian/changelog
===================================================================
--- trunk/packages/strap-base/trunk/debian/changelog	2012-05-30 23:25:38 UTC (rev 11116)
+++ trunk/packages/strap-base/trunk/debian/changelog	2012-05-31 00:01:57 UTC (rev 11117)
@@ -1,6 +1,6 @@
 strap-base (1-1) UNRELEASED; urgency=low
 
-  * Initial release (Closes: #xxxxxxxxx)
+  * Initial release (Closes: #675202)
 
  -- Christoph Gille <christophgil at googlemail.com>  Thu, 17 Nov 2011 18:30:16 +0100
 	

Modified: trunk/packages/strap-base/trunk/debian/control
===================================================================
--- trunk/packages/strap-base/trunk/debian/control	2012-05-30 23:25:38 UTC (rev 11116)
+++ trunk/packages/strap-base/trunk/debian/control	2012-05-31 00:01:57 UTC (rev 11117)
@@ -8,16 +8,21 @@
 Homepage: http://www.bioinformatics.org/strap/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/strap-base/trunk/
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/strap-base/trunk/
-
 Package: strap-base
 Architecture: any
 Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, ${misc:Depends},    libcommons-httpclient-java, libcommons-compress-java, libhttpmime-java, libjavatar-java,libhttpclient-java, libgeronimo-activation-1.1-spec-java
 Recommends:
-Suggests: 
+Suggests: strap
 Enhances: 
-Description:  Base for the bioinformatics tool Strap and related utilities
- This package is required for Strap.
- Strap is a work-bench for protein sequences and structures.
+Description: Minimal environment for the bioinformatics tool Strap for
+  aligning proteins by sequence and/or structure.  This package is
+  sufficient to run /usr/bin/strap-protein-alignment.  But external
+  programs and libraries enhancing the functionality of Strap such as
+  3D-visualization, automated 3D-superposition, 3D-alignment and
+  sequence alignment are missing. End users should therefore install
+  the debian package "strap" which links all required packages. Other
+  software using Strap as a viewer for proteins, alignments and
+  3D-superpositions may not need the full spectrum of external
+  libraries and may therefore refer to "strap-base" to reduce the
+  number of loaded debian packages.
 
-
-# texlive-latex-extra
\ No newline at end of file

Modified: trunk/packages/strap-base/trunk/debian/copyright
===================================================================
--- trunk/packages/strap-base/trunk/debian/copyright	2012-05-30 23:25:38 UTC (rev 11116)
+++ trunk/packages/strap-base/trunk/debian/copyright	2012-05-31 00:01:57 UTC (rev 11117)
@@ -1,6 +1,6 @@
 Format: http://dep.debian.net/deps/dep5/
 Upstream-Name: Strap
-Upstream-Contact: Oliver Frings christoph_gi-at-googlemail-com
+Upstream-Contact: Christoph Gille christoph_gi-at-googlemail-com
 Source: http://www.bioinformatics.org/strap/debian/strap-base_1.orig.tar.gz
 Comment: Some files were removed, see the get-orig-source target in ‘debian/rules’.