[med-svn] r11132 - in trunk/packages/strap/trunk/debian: . bin bin2
Andreas Tille
tille at alioth.debian.org
Thu May 31 10:09:21 UTC 2012
Author: tille
Date: 2012-05-31 10:09:21 +0000 (Thu, 31 May 2012)
New Revision: 11132
Added:
trunk/packages/strap/trunk/debian/bin/strap_util_toClustal
trunk/packages/strap/trunk/debian/bin/strap_util_toFasta
trunk/packages/strap/trunk/debian/bin/strap_util_toMultipleFasta
trunk/packages/strap/trunk/debian/bin/toXXX.sh
Removed:
trunk/packages/strap/trunk/debian/bin2/strap_util_toClustal
trunk/packages/strap/trunk/debian/bin2/strap_util_toFasta
trunk/packages/strap/trunk/debian/bin2/strap_util_toMultipleFasta
trunk/packages/strap/trunk/debian/bin2/toXXX.sh
Modified:
trunk/packages/strap/trunk/debian/Sed.sh
trunk/packages/strap/trunk/debian/strap.install
Log:
Move debian/bin2 to debian/bin
Modified: trunk/packages/strap/trunk/debian/Sed.sh
===================================================================
--- trunk/packages/strap/trunk/debian/Sed.sh 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/Sed.sh 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,7 +1,7 @@
-cat bin2/toXXX.sh | sed 's|-toXXX|-toFasta|1' > bin2/strap_util_toFasta
-cat bin2/toXXX.sh | sed 's|-toXXX|-toMultipleFasta|1' > bin2/strap_util_toMultipleFasta
-cat bin2/toXXX.sh | sed 's|-toXXX|-toClustal|1' > bin2/strap_util_toClustal
-chmod a+x bin2/*
+cat bin/toXXX.sh | sed 's|-toXXX|-toFasta|1' > bin/strap_util_toFasta
+cat bin/toXXX.sh | sed 's|-toXXX|-toMultipleFasta|1' > bin/strap_util_toMultipleFasta
+cat bin/toXXX.sh | sed 's|-toXXX|-toClustal|1' > bin/strap_util_toClustal
+chmod a+x bin/*
cat man/toXXX.1 | sed 's|toXXX|toClustal|1;s|FORMAT|clustal|1;s|OUTPUT|A single file in clustal format is written.|1' > man/strap_util_toClustal.1
Copied: trunk/packages/strap/trunk/debian/bin/strap_util_toClustal (from rev 11131, trunk/packages/strap/trunk/debian/bin2/strap_util_toClustal)
===================================================================
--- trunk/packages/strap/trunk/debian/bin/strap_util_toClustal (rev 0)
+++ trunk/packages/strap/trunk/debian/bin/strap_util_toClustal 2012-05-31 10:09:21 UTC (rev 11132)
@@ -0,0 +1,23 @@
+#! /bin/sh
+
+# See http://3d-alignment.eu/
+
+
+. /usr/lib/java-wrappers/java-wrappers.sh
+find_java_runtime java6
+
+# Java option max heap size
+xmx=-Xmx200M
+
+for i in $*; do
+ if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
+done
+
+# The maximum heap size option is $xmx.
+# To change, add a program line option like -Xmx500M
+# which would set heap size to 500 Megabytes.
+
+
+$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toClustal
+
+
Copied: trunk/packages/strap/trunk/debian/bin/strap_util_toFasta (from rev 11131, trunk/packages/strap/trunk/debian/bin2/strap_util_toFasta)
===================================================================
--- trunk/packages/strap/trunk/debian/bin/strap_util_toFasta (rev 0)
+++ trunk/packages/strap/trunk/debian/bin/strap_util_toFasta 2012-05-31 10:09:21 UTC (rev 11132)
@@ -0,0 +1,23 @@
+#! /bin/sh
+
+# See http://3d-alignment.eu/
+
+
+. /usr/lib/java-wrappers/java-wrappers.sh
+find_java_runtime java6
+
+# Java option max heap size
+xmx=-Xmx200M
+
+for i in $*; do
+ if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
+done
+
+# The maximum heap size option is $xmx.
+# To change, add a program line option like -Xmx500M
+# which would set heap size to 500 Megabytes.
+
+
+$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toFasta
+
+
Copied: trunk/packages/strap/trunk/debian/bin/strap_util_toMultipleFasta (from rev 11131, trunk/packages/strap/trunk/debian/bin2/strap_util_toMultipleFasta)
===================================================================
--- trunk/packages/strap/trunk/debian/bin/strap_util_toMultipleFasta (rev 0)
+++ trunk/packages/strap/trunk/debian/bin/strap_util_toMultipleFasta 2012-05-31 10:09:21 UTC (rev 11132)
@@ -0,0 +1,23 @@
+#! /bin/sh
+
+# See http://3d-alignment.eu/
+
+
+. /usr/lib/java-wrappers/java-wrappers.sh
+find_java_runtime java6
+
+# Java option max heap size
+xmx=-Xmx200M
+
+for i in $*; do
+ if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
+done
+
+# The maximum heap size option is $xmx.
+# To change, add a program line option like -Xmx500M
+# which would set heap size to 500 Megabytes.
+
+
+$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toMultipleFasta
+
+
Copied: trunk/packages/strap/trunk/debian/bin/toXXX.sh (from rev 11131, trunk/packages/strap/trunk/debian/bin2/toXXX.sh)
===================================================================
--- trunk/packages/strap/trunk/debian/bin/toXXX.sh (rev 0)
+++ trunk/packages/strap/trunk/debian/bin/toXXX.sh 2012-05-31 10:09:21 UTC (rev 11132)
@@ -0,0 +1,23 @@
+#! /bin/sh
+
+# See http://3d-alignment.eu/
+
+
+. /usr/lib/java-wrappers/java-wrappers.sh
+find_java_runtime java6
+
+# Java option max heap size
+xmx=-Xmx200M
+
+for i in $*; do
+ if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
+done
+
+# The maximum heap size option is $xmx.
+# To change, add a program line option like -Xmx500M
+# which would set heap size to 500 Megabytes.
+
+
+$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toXXX
+
+
Deleted: trunk/packages/strap/trunk/debian/bin2/strap_util_toClustal
===================================================================
--- trunk/packages/strap/trunk/debian/bin2/strap_util_toClustal 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/bin2/strap_util_toClustal 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,23 +0,0 @@
-#! /bin/sh
-
-# See http://3d-alignment.eu/
-
-
-. /usr/lib/java-wrappers/java-wrappers.sh
-find_java_runtime java6
-
-# Java option max heap size
-xmx=-Xmx200M
-
-for i in $*; do
- if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
-done
-
-# The maximum heap size option is $xmx.
-# To change, add a program line option like -Xmx500M
-# which would set heap size to 500 Megabytes.
-
-
-$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toClustal
-
-
Deleted: trunk/packages/strap/trunk/debian/bin2/strap_util_toFasta
===================================================================
--- trunk/packages/strap/trunk/debian/bin2/strap_util_toFasta 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/bin2/strap_util_toFasta 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,23 +0,0 @@
-#! /bin/sh
-
-# See http://3d-alignment.eu/
-
-
-. /usr/lib/java-wrappers/java-wrappers.sh
-find_java_runtime java6
-
-# Java option max heap size
-xmx=-Xmx200M
-
-for i in $*; do
- if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
-done
-
-# The maximum heap size option is $xmx.
-# To change, add a program line option like -Xmx500M
-# which would set heap size to 500 Megabytes.
-
-
-$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toFasta
-
-
Deleted: trunk/packages/strap/trunk/debian/bin2/strap_util_toMultipleFasta
===================================================================
--- trunk/packages/strap/trunk/debian/bin2/strap_util_toMultipleFasta 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/bin2/strap_util_toMultipleFasta 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,23 +0,0 @@
-#! /bin/sh
-
-# See http://3d-alignment.eu/
-
-
-. /usr/lib/java-wrappers/java-wrappers.sh
-find_java_runtime java6
-
-# Java option max heap size
-xmx=-Xmx200M
-
-for i in $*; do
- if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
-done
-
-# The maximum heap size option is $xmx.
-# To change, add a program line option like -Xmx500M
-# which would set heap size to 500 Megabytes.
-
-
-$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toMultipleFasta
-
-
Deleted: trunk/packages/strap/trunk/debian/bin2/toXXX.sh
===================================================================
--- trunk/packages/strap/trunk/debian/bin2/toXXX.sh 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/bin2/toXXX.sh 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,23 +0,0 @@
-#! /bin/sh
-
-# See http://3d-alignment.eu/
-
-
-. /usr/lib/java-wrappers/java-wrappers.sh
-find_java_runtime java6
-
-# Java option max heap size
-xmx=-Xmx200M
-
-for i in $*; do
- if [ $i != ${i##-Xmx} ]; then xmx=$i; fi
-done
-
-# The maximum heap size option is $xmx.
-# To change, add a program line option like -Xmx500M
-# which would set heap size to 500 Megabytes.
-
-
-$JAVA_HOME/bin/java $xmx -cp /usr/lib/strap-base/strap-protein-alignment-1.jar charite.christo.strap.Strap -toXXX
-
-
Modified: trunk/packages/strap/trunk/debian/strap.install
===================================================================
--- trunk/packages/strap/trunk/debian/strap.install 2012-05-31 09:19:11 UTC (rev 11131)
+++ trunk/packages/strap/trunk/debian/strap.install 2012-05-31 10:09:21 UTC (rev 11132)
@@ -1,4 +1,3 @@
-debian/bin2/strap_util_toFasta usr/bin
-debian/bin2/strap_util_toMultipleFasta usr/bin
-debian/bin2/strap_util_toClustal usr/bin
-
+debian/bin/strap_util_toFasta usr/bin
+debian/bin/strap_util_toMultipleFasta usr/bin
+debian/bin/strap_util_toClustal usr/bin
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