[med-svn] [SCM] ray annotated tag, v1.6.0, created. v1.6.0

[Sébastien Boisvert]

The annotated tag, v1.6.0 has been created
        at  ab3aeadf333cacacb99ec37507dbc32ba808b05d (tag)
   tagging  ee015727bb6d0e14ddb3cd02132a7fc1cebfa29a (commit)
  replaces  v1.6.0-rc2
 tagged by  Sébastien Boisvert
        on  Mon Jun 13 19:28:07 2011 -0400

- Shortlog ------------------------------------------------------------
Ray version 1.6.0

Sébastien Boisvert (27):
      Added compilation options for build-compression.
      Readded the minimum number of scaffolding links because
      Added documentation for large k-mers.
      Updated documentation.
      Added 2 options to the Makefile: GPROF and OPTIMIZE
      Fixed compilation error with -pedantic and -Wextra.
      Optimised some code again.
      Updated the README.
      Define MAXKMERLENGTH if it is not defined.
      Fixed some compilation errors under Microsoft Visual Studio 10.0.
      Moved tests.
      Removed inttypes.h as versions prior to Microsoft Visual Studio 10.0 do not support it I believe.
      Fixed some other compilation errors on Microsoft Windows.
      - Moved the simulator outside the tree.
      Fixed a compilation error involving stdexcept.
      - Fixed namespace collision with Message and stdexcept.
      Added ray_windows.h to LibraryWorker
      Message also needs stdexcept because it includes mpi.h which I believe check __cplusplus
      Finally fixed all compilation errors.
      Ray works on Microsoft Windows and can be compiled with Microsoft Visual Studio 10.0.
      Added some options in the manual.
      Fixed a compilation warning for printf with uint64_t.
      Added documentation of the amos option.
      By default, Ray now displays the options available if parameters are provided or if -help is provided.
      Fixed the tiling (TLE) entries in the AMOS file when forwardOffset or reverseOffset are not 0.
      Changed method name.
      Updated the changelog.

-----------------------------------------------------------------------

-- 
Packaging of Ray in Debian