[med-svn] r12496 - in trunk/packages: . phyloviz phyloviz/core phyloviz/core/trunk phyloviz/core/trunk/debian phyloviz/core/trunk/debian/source

[Andreas Tille]

Author: tille
Date: 2012-11-07 11:19:22 +0000 (Wed, 07 Nov 2012)
New Revision: 12496

Added:
   trunk/packages/phyloviz/
   trunk/packages/phyloviz/core/
   trunk/packages/phyloviz/core/trunk/
   trunk/packages/phyloviz/core/trunk/debian/
   trunk/packages/phyloviz/core/trunk/debian/changelog
   trunk/packages/phyloviz/core/trunk/debian/compat
   trunk/packages/phyloviz/core/trunk/debian/control
   trunk/packages/phyloviz/core/trunk/debian/rules
   trunk/packages/phyloviz/core/trunk/debian/source/
   trunk/packages/phyloviz/core/trunk/debian/source/format
   trunk/packages/phyloviz/core/trunk/debian/watch
Log:
Inject relevant machine-readable metadata for phyloviz-core, other plugins will follow once the packaging stuff is finished


Added: trunk/packages/phyloviz/core/trunk/debian/changelog
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/changelog	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1,5 @@
+phyloviz-core (0.0.20111121-1) unstable; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 07 Nov 2012 12:07:35 +0100

Added: trunk/packages/phyloviz/core/trunk/debian/compat
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/compat	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1 @@
+9

Added: trunk/packages/phyloviz/core/trunk/debian/control
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/control	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/control	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1,33 @@
+Source: phyloviz-core
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), javahelper (>=0.25), default-jdk, ant
+Standards-Version: 3.9.3
+Homepage: http://www.phyloviz.net
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/phyloviz/core/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/phyloviz/core/trunk/
+
+Package: phyloviz-core
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: phylogenetic inference and data visualization for sequence based typing methods
+ Phyloviz allows the analysis of sequence-based typing methods that
+ generate allelic profiles and their associated epidemiological data.
+ .
+ For representing the possible evolutionary relationships between
+ strains identified by allelic profiles it uses the goeBURST algorithm, a
+ refinement of eBURST algorithm proposed by Feil et al., and its
+ expansion to generate a complete minimum spanning tree (MST).
+ .
+ Phyloviz is being developed in a modular way to allow its expansion
+ with novel data analysis algorithms and new visualization modules.
+ .
+ Capabilities
+  * Modularity allows the creation of plugins to analyse different types of data
+  * Allows the visualization of data overlaid onto goeBURST and MST results
+  * Confidence assessment of each link in the graph
+  * Query the data and see the query results directly onto the graphs
+  * Search your data set using regular expressions to select what to display
+  * Export the results as images in various formats: eps, png, gif, pdf, etc

Added: trunk/packages/phyloviz/core/trunk/debian/rules
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/rules	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@ --with javahelper
+
+#get-orig-source:
+#	. debian/get-orig-source


Property changes on: trunk/packages/phyloviz/core/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/phyloviz/core/trunk/debian/source/format
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/source/format	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/phyloviz/core/trunk/debian/watch
===================================================================
--- trunk/packages/phyloviz/core/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/phyloviz/core/trunk/debian/watch	2012-11-07 11:19:22 UTC (rev 12496)
@@ -0,0 +1,2 @@
+# version=3
+# currently upstream has no proper versioning