[med-svn] r12498 - trunk/packages/babraham/fastqc/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2012-11-07 12:21:04 +0000 (Wed, 07 Nov 2012)
New Revision: 12498

Modified:
   trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch
   trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
Log:
remove pure debugging code from patch and make sure it applies cleanly; refreshed patches


Modified: trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch	2012-11-07 12:17:12 UTC (rev 12497)
+++ trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch	2012-11-07 12:21:04 UTC (rev 12498)
@@ -1,7 +1,5 @@
-Index: fastqc-0.10.0/Makefile
-===================================================================
---- /dev/null	1970-01-01 00:00:00.000000000 +0000
-+++ fastqc-0.10.0/Makefile	2012-04-25 00:53:51.965638178 +0200
+--- /dev/null
++++ b/Makefile
 @@ -0,0 +1,19 @@
 +
 +all: fastqc.jar

Modified: trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch
===================================================================
--- trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch	2012-11-07 12:17:12 UTC (rev 12497)
+++ trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch	2012-11-07 12:21:04 UTC (rev 12498)
@@ -1,17 +1,6 @@
-Index: fastqc-0.10.0/fastqc
-===================================================================
---- fastqc-0.10.0.orig/fastqc	2011-09-08 17:26:38.000000000 +0200
-+++ fastqc-0.10.0/fastqc	2012-04-25 00:37:59.306680038 +0200
-@@ -7,6 +7,8 @@
- # Check to see if they've mistakenly downloaded the source distribution
- # since several people have made this mistake
- 
-+print STDERR "RealBin: $RealBin\n";
-+
- if (-e "$RealBin/uk/ac/bbsrc/babraham/FastQC/FastQCApplication.java") {
- 	die "This is the source distribution of FastQC.  You need to get the compiled version if you want to run the program\n";
- }
-@@ -17,12 +19,12 @@
+--- a/fastqc
++++ b/fastqc
+@@ -17,12 +17,12 @@ if ($^O =~ /Win/) {
  	$delimiter = ';';
  }
  
@@ -28,12 +17,3 @@
  
  my @java_args;
  my @files;
-@@ -230,5 +232,5 @@
- 
-     Any bugs in fastqc should be reported either to simon.andrews at babraham.ac.uk
-     or in www.bioinformatics.bbsrc.ac.uk/bugzilla/
--                   
--    
-\ No newline at end of file
-+
-+