[med-svn] r12512 - in trunk/packages: . seqtk seqtk/trunk seqtk/trunk/debian seqtk/trunk/debian/source
Andreas Tille
tille at alioth.debian.org
Wed Nov 7 15:51:51 UTC 2012
Author: tille
Date: 2012-11-07 15:51:51 +0000 (Wed, 07 Nov 2012)
New Revision: 12512
Added:
trunk/packages/seqtk/
trunk/packages/seqtk/trunk/
trunk/packages/seqtk/trunk/debian/
trunk/packages/seqtk/trunk/debian/changelog
trunk/packages/seqtk/trunk/debian/compat
trunk/packages/seqtk/trunk/debian/control
trunk/packages/seqtk/trunk/debian/copyright
trunk/packages/seqtk/trunk/debian/get-orig-source
trunk/packages/seqtk/trunk/debian/rules
trunk/packages/seqtk/trunk/debian/source/
trunk/packages/seqtk/trunk/debian/source/format
trunk/packages/seqtk/trunk/debian/watch
Log:
Inject machine readable files for seqtk packaging to enable showing up at tasks page easily; TODO: Sort out how to reasonable obtain source from Github reasonably
Added: trunk/packages/seqtk/trunk/debian/changelog
===================================================================
--- trunk/packages/seqtk/trunk/debian/changelog (rev 0)
+++ trunk/packages/seqtk/trunk/debian/changelog 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,5 @@
+seqtk (0.0.20121016-1) unstable; urgency=low
+
+ * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org> Wed, 07 Nov 2012 16:07:35 +0100
Added: trunk/packages/seqtk/trunk/debian/compat
===================================================================
--- trunk/packages/seqtk/trunk/debian/compat (rev 0)
+++ trunk/packages/seqtk/trunk/debian/compat 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1 @@
+9
Added: trunk/packages/seqtk/trunk/debian/control
===================================================================
--- trunk/packages/seqtk/trunk/debian/control (rev 0)
+++ trunk/packages/seqtk/trunk/debian/control 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,24 @@
+Source: seqtk
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Homepage: http://kevin-gattaca.blogspot.de/2012/05/program-seqtk-for-sampling-trimming.html
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/seqtk/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/seqtk/trunk/
+
+Package: seqtk
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: sampling, trimming, fastq2fasta, subsequence, reverse complement
+ Currently, seqtk supports quality based trimming with the phred
+ algorithm, converting fastq to fasta, reverse complementing sequences,
+ extracting or masking subsequences in regions given in a BED/name list
+ file, and more. It contains a subsampling module to sample exactly n
+ sequences or a fraction of sequences.
+ .
+ Seqtk supports both fasta and fastq input files, which can be
+ optionally gzip compressed.
+
Added: trunk/packages/seqtk/trunk/debian/copyright
===================================================================
--- trunk/packages/seqtk/trunk/debian/copyright (rev 0)
+++ trunk/packages/seqtk/trunk/debian/copyright 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,32 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: seqtk
+Source: https://github.com/lh3/seqtk
+
+Files: *
+Copyright: © 2008-2012 Heng Li <lh3 at me.com>
+License: MIT
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
Added: trunk/packages/seqtk/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/seqtk/trunk/debian/get-orig-source (rev 0)
+++ trunk/packages/seqtk/trunk/debian/get-orig-source 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,3 @@
+#!/bin/sh
+echo "Need to ask upstream for real release. Meanwhile you can do:"
+echo " git clone https://github.com/lh3/seqtk.git"
Property changes on: trunk/packages/seqtk/trunk/debian/get-orig-source
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/seqtk/trunk/debian/rules
===================================================================
--- trunk/packages/seqtk/trunk/debian/rules (rev 0)
+++ trunk/packages/seqtk/trunk/debian/rules 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+ dh $@
+
+#get-orig-source:
+# . debian/get-orig-source
Property changes on: trunk/packages/seqtk/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/seqtk/trunk/debian/source/format
===================================================================
--- trunk/packages/seqtk/trunk/debian/source/format (rev 0)
+++ trunk/packages/seqtk/trunk/debian/source/format 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/seqtk/trunk/debian/watch
===================================================================
--- trunk/packages/seqtk/trunk/debian/watch (rev 0)
+++ trunk/packages/seqtk/trunk/debian/watch 2012-11-07 15:51:51 UTC (rev 12512)
@@ -0,0 +1,3 @@
+# version=3
+# Only at
+# https://github.com/lh3/seqtk.git
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