[med-svn] [SCM] bamtools branch, debian, updated. f2692d93b5a76deb154ff2709620cba418c8d84e

[Dominique Belhachemi]

The following commit has been merged in the debian branch:
commit f2692d93b5a76deb154ff2709620cba418c8d84e
Author: Dominique Belhachemi <domibel at debian.org>
Date:   Fri Nov 9 08:44:44 2012 -0500

    added a bamtools binary package which contains the command-line toolkit

diff --git a/debian/bamtools.install b/debian/bamtools.install
new file mode 100644
index 0000000..1df36c6
--- /dev/null
+++ b/debian/bamtools.install
@@ -0,0 +1 @@
+usr/bin/*
diff --git a/debian/control b/debian/control
index a072d9d..ae3c53c 100644
--- a/debian/control
+++ b/debian/control
@@ -9,6 +9,38 @@ Homepage: https://github.com/pezmaster31/bamtools/wiki
 Vcs-Git: git://anonscm.debian.org/debian-med/bamtools.git
 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/bamtools.git;a=shortlog;h=refs/heads/debian
 
+Package: bamtools
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: C++ API for manipulating BAM (genome alignment) files
+ BamTools facilitates research analysis and data management using BAM
+ files.  It copes with the enormous amount of data produced by current
+ sequencing technologies that is typically stored in compressed, binary
+ formats that are not easily handled by the text-based parsers commonly
+ used in bioinformatics research.
+ .
+ BamTools provides both a C++ API for BAM file support as well as a
+ command-line toolkit.
+ .
+ This is the bamtools command-line toolkit
+ .
+ Available bamtools commands:
+ convert  Converts between BAM and a number of other formats
+ count    Prints number of alignments in BAM file(s)
+ coverage Prints coverage statistics from the input BAM file
+ filter   Filters BAM file(s) by user-specified criteria
+ header   Prints BAM header information
+ index    Generates index for BAM file
+ merge    Merge multiple BAM files into single file
+ random   Select random alignments from existing BAM file(s), intended more as
+          a testing tool.
+ resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
+ revert   Removes duplicate marks and restores original base qualities
+ sort     Sorts the BAM file according to some criteria
+ split    Splits a BAM file on user-specified property, creating a new BAM
+          output file for each value found
+ stats    Prints some basic statistics from input BAM file(s)
+
 Package: libbamtools-dev
 Section: libdevel
 Architecture: any
@@ -39,20 +71,4 @@ Description: Command-line toolkit for BAM (genome alignment) files
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
- Available bamtools commands:
- convert  Converts between BAM and a number of other formats
- count    Prints number of alignments in BAM file(s)
- coverage Prints coverage statistics from the input BAM file
- filter   Filters BAM file(s) by user-specified criteria
- header   Prints BAM header information
- index    Generates index for BAM file
- merge    Merge multiple BAM files into single file
- random   Select random alignments from existing BAM file(s), intended more as
-          a testing tool.
- resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
- revert   Removes duplicate marks and restores original base qualities
- sort     Sorts the BAM file according to some criteria
- split    Splits a BAM file on user-specified property, creating a new BAM
-          output file for each value found
- stats    Prints some basic statistics from input BAM file(s)
-
+ This is the runtime library
diff --git a/debian/libbamtools2.2.0.install b/debian/libbamtools2.2.0.install
index bc08a02..093956b 100644
--- a/debian/libbamtools2.2.0.install
+++ b/debian/libbamtools2.2.0.install
@@ -1,2 +1 @@
-usr/bin/*
 usr/lib/*.so.*

-- 
debian packaging for bamtools