[med-svn] [SCM] picard-tools branch, master, updated. debian/1.77-1-3-g05a3e0a

[Olivier Sallou]

The following commit has been merged in the master branch:
commit fb19b3c49d7f0390a249cfd911ea92db81e7ddbd
Merge: 4b0e1925a72ce0553288b616f50f40de78fb3247 0646eb72e212a040ba2a8ad03b3c17ecd7f5b681
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Sat Oct 13 11:20:39 2012 +0200

    Merge commit 'upstream/1.78'


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manipulate SAM and BAM files